SOBP

General Information

Gene Name       : SOBP
Gene ID             : ENSG00000112320.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SOBP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SOBPENSG00000112320.110.760.360.56ENCSR000AEF
HepG2SOBPENSG00000112320.117.865.816.83ENCSR985KAT
K562SOBPENSG00000112320.110.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SOBP is not avaliable on ENCORE database.



Proteins bound to RNA
  • SOBP RNA is bound by 18 proteins.  







eCLIP assay for SOBP is not avaliable on ENCORE database.





18 proteins are bound to SOBP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6107811404107811490+5'-UTR3.097813.17744HepG2GRWD1
chr6107827562107827632+CDS,intron-Proximal3.482175.00751HepG2BCLAF1
chr6107824920107824998+CDS3.194754.23325HepG2BCLAF1
chr6107955613107955705+CDS4.9384411.15355HepG2PCBP2
chr6107955300107955397+CDS5.246209.01744HepG2HNRNPK
chr6107955440107955542+CDS6.0087214.12285HepG2DDX59
chr6107955637107955707+CDS3.970096.08987HepG2HNRNPK
chr6107854760107854820+CDS,intron-Proximal3.084685.14343HepG2PPIG
chr6107854754107854825+CDS,intron-Proximal3.277725.79905HepG2BCLAF1
chr6107955409107955468+CDS3.466613.84715HepG2HNRNPK
chr6107955469107955543+CDS5.272694.57427HepG2PCBP2
chr6107955625107955689+CDS4.2647610.61158HepG2DDX59
chr6107955141107955180+CDS3.274484.14131HepG2DDX59
chr6107956364107956435+CDS4.949514.77840HepG2EIF3H
chr6107846855107846992+intron-Distal3.083943.71789HepG2PTBP1
chr6107841021107841074+intron-Distal4.8991212.68579HepG2DDX59
chr6107839552107839633+intron-Distal5.551913.92947HepG2DDX59
chr6107845375107845470+intron-Distal3.011864.37623HepG2HNRNPM
chr6107840880107840980+intron-Distal3.353469.61131HepG2DDX59
chr6107853420107853501+intron-Distal4.507405.82272HepG2HNRNPL
chr6107841760107841849+intron-Distal3.599336.00746HepG2DDX59
chr6107828292107828403+intron-Distal3.840053.24590HepG2ILF3
chr6107839865107839927+intron-Distal3.975503.98265HepG2ILF3
chr6107928948107929058+intron-Distal3.546053.64762HepG2QKI
chr6107852100107852218+intron-Distal3.438037.49673HepG2U2AF2
chr6107925792107925873+intron-Distal4.362667.59655HepG2DDX59
chr6107839534107839603+intron-Distal4.093123.58932HepG2AGGF1
chr6107914950107915025+intron-Distal3.341363.94088HepG2QKI
chr6107967186107967249+intron-Distal3.936503.24150HepG2HLTF
chr6107852125107852189+intron-Distal4.121494.26925HepG2KHSRP
chr6107830531107830594+intron-Distal5.5379013.49782HepG2XPO5
chr6107850005107850077+intron-Distal4.079155.28337HepG2HNRNPM
chr6107925731107925848+intron-Distal5.3229710.33160HepG2HNRNPK
chr6107838549107838627+intron-Distal3.883053.24150HepG2HLTF
chr6107848649107848752+intron-Distal4.3516814.62523HepG2XPO5
chr6107841559107841602+intron-Distal4.260013.85494HepG2HLTF
chr6107838771107838834+intron-Distal3.212874.00486HepG2HNRNPL
chr6107843014107843105+intron-Distal3.953265.04426HepG2DDX59
chr6107925729107925794+intron-Distal6.4411117.69339HepG2PCBP2
chr6107925794107925855+intron-Distal6.3184516.02947HepG2PCBP2
chr6107811923107811974+intron-Proximal4.545675.66749HepG2TIA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SOBP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SOBP is not available on ENCORE database.

  • 91 RBPs can affect the levels of SOBP.  








The Knockdown/knockout RNA-Seq assay for SOBP is not available on ENCORE database.





91 RBPs can affect the gene expression of SOBP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SOBPENSG00000112320.7476.76570288.943700.722403.369201.47110HepG2AARS
SOBPENSG00000112320.7429.34800299.209700.520903.130201.99670HepG2AATF
SOBPENSG00000112320.7653.17940299.164801.1264014.1607012.18070HepG2ADAR
SOBPENSG00000112320.7549.08570416.706400.397901.787301.34990HepG2AKAP1
SOBPENSG00000112320.7219.62040362.05470-0.721206.267405.15720HepG2AKAP8L
SOBPENSG00000112320.7891.07800344.779501.3698018.6600016.83870HepG2ASCC1
SOBPENSG00000112320.7436.15500831.26650-0.9305017.1990015.75370HepG2AUH
SOBPENSG00000112320.7557.32580770.68430-0.467603.595202.92280HepG2BOP1
SOBPENSG00000112320.7784.56820512.783500.613406.708004.86390HepG2BUD13
SOBPENSG00000112320.7372.81710500.90000-0.426102.693501.93230HepG2CALR
SOBPENSG00000112320.71349.82590783.726800.784303.649602.51470HepG2CCAR1
SOBPENSG00000112320.7584.63610360.294500.698309.174308.09940HepG2CKAP4
SOBPENSG00000112320.7241.39730415.81760-0.784504.037603.10750HepG2CNOT7
SOBPENSG00000112320.7392.96180707.51420-0.848408.727807.56610HepG2CPSF6
SOBPENSG00000112320.7873.82310563.673000.632405.966604.38360HepG2CPSF7
SOBPENSG00000112320.7670.42500426.684800.651807.659706.68920HepG2CELF1
SOBPENSG00000112320.7319.95350458.82530-0.520104.802403.86560HepG2DAZAP1
SOBPENSG00000112320.7536.58560333.263000.687008.046506.75210HepG2DDX19B
SOBPENSG00000112320.7178.74890330.24810-0.885606.640205.63930HepG2DDX21
SOBPENSG00000112320.7450.26270323.066100.478802.982102.03140HepG2DDX24
SOBPENSG00000112320.7560.95540399.151600.490802.824702.19280HepG2DDX3X
SOBPENSG00000112320.7488.95380324.809200.590004.485102.80650HepG2DDX52
SOBPENSG00000112320.71889.69880803.439601.2338011.177409.29490HepG2DDX59
SOBPENSG00000112320.7431.15720575.84790-0.417502.495701.53160HepG2DDX5
SOBPENSG00000112320.7581.77710342.930400.762505.546704.69850HepG2DDX6
SOBPENSG00000112320.7452.83770344.733800.393402.322101.69250HepG2DKC1
SOBPENSG00000112320.7227.85090301.23330-0.402802.023201.41210HepG2DNAJC21
SOBPENSG00000112320.7527.27520298.598700.820208.117307.07310HepG2DNAJC2
SOBPENSG00000112320.7498.21130304.019800.712504.499503.07790HepG2AGO1
SOBPENSG00000112320.7994.34210519.175600.9374015.4271012.99260HepG2EIF2S2
SOBPENSG00000112320.7849.67260354.686201.2603012.8184011.39320HepG2EIF4B
SOBPENSG00000112320.7993.11590592.801700.744308.470406.71170HepG2ESF1
SOBPENSG00000112320.71282.53270954.465700.426105.196704.42000HepG2ETF1
SOBPENSG00000112320.7438.97580295.402900.571403.474401.53110HepG2EXOSC9
SOBPENSG00000112320.7400.62910708.76000-0.823003.316302.19970HepG2FTO
SOBPENSG00000112320.7622.45730362.005800.781906.816205.40640HepG2G3BP2
SOBPENSG00000112320.7480.52780280.073000.778705.947504.63050HepG2GEMIN5
SOBPENSG00000112320.71081.59580801.978900.431402.822602.17610HepG2GPKOW
SOBPENSG00000112320.7560.47190384.908100.542002.716401.61450HepG2GRSF1
SOBPENSG00000112320.7618.94030344.030300.8472012.9027011.04340HepG2HDGF
SOBPENSG00000112320.7447.80550304.119500.558103.513602.79650HepG2HNRNPA1
SOBPENSG00000112320.7683.39670487.760300.486504.756303.84770HepG2HNRNPF
SOBPENSG00000112320.7528.87880345.326800.614904.292903.43900HepG2HNRNPK
SOBPENSG00000112320.7639.48680417.965200.613407.573006.50590HepG2HNRNPL
SOBPENSG00000112320.7491.10110336.048000.547305.230604.41780HepG2HNRNPU
SOBPENSG00000112320.7653.15430346.547600.914309.062307.91880HepG2IGF2BP2
SOBPENSG00000112320.7250.04940405.35890-0.697003.670502.11870HepG2ILF3
SOBPENSG00000112320.7422.27600329.407000.358202.462101.49910HepG2KIF1C
SOBPENSG00000112320.7562.58200369.752300.605403.711802.99150HepG2MATR3
SOBPENSG00000112320.7366.26050559.39170-0.611003.415302.51850HepG2MSI2
SOBPENSG00000112320.7859.93520378.452301.1840014.8646013.47580HepG2NCBP2
SOBPENSG00000112320.7563.26610266.235101.081002.305101.31770HepG2NONO
SOBPENSG00000112320.7488.03800336.991600.534203.185002.41240HepG2PABPC4
SOBPENSG00000112320.71043.85930354.853701.5565047.9919046.04710HepG2PCBP1
SOBPENSG00000112320.7372.39250260.137400.517503.292701.94610HepG2PKM
SOBPENSG00000112320.7460.10150299.726500.618205.603404.58670HepG2PPIL4
SOBPENSG00000112320.7675.37140361.081300.9033013.1971012.17970HepG2PTBP1
SOBPENSG00000112320.7329.67810434.29760-0.397602.218001.67640HepG2PUF60
SOBPENSG00000112320.7589.86730461.014900.355502.959102.35070HepG2PUM1
SOBPENSG00000112320.7356.15700460.68510-0.371302.218001.61480HepG2PUM2
SOBPENSG00000112320.7829.43400367.006501.1762027.5094025.94130HepG2PUS1
SOBPENSG00000112320.7768.40760391.050600.9744014.5786013.30320HepG2QKI
SOBPENSG00000112320.7654.04320376.704300.795904.280803.41350HepG2RAVER1
SOBPENSG00000112320.7270.95250797.74410-1.5579026.2120024.94280HepG2RBM22
SOBPENSG00000112320.7609.38820354.907100.779808.150607.04370HepG2RBM25
SOBPENSG00000112320.7528.64930383.402500.463402.692201.71270HepG2RBM27
SOBPENSG00000112320.7682.85410401.845200.764809.732208.83010HepG2NELFE
SOBPENSG00000112320.7856.59010374.270801.1944025.4032023.86930HepG2RECQL
SOBPENSG00000112320.7395.64480525.49730-0.409502.585101.92150HepG2RPLP0
SOBPENSG00000112320.7162.42510299.26060-0.881607.528906.54230HepG2SAFB2
SOBPENSG00000112320.71244.53880710.545600.808504.993504.06940HepG2SF3A3
SOBPENSG00000112320.7652.29720375.924400.795008.182707.24860HepG2SF3B4
SOBPENSG00000112320.7586.82870416.400700.494904.910404.01700HepG2SLBP
SOBPENSG00000112320.7262.08160384.31100-0.552302.667701.73020HepG2SMNDC1
SOBPENSG00000112320.7548.28150366.794300.579803.358301.59630HepG2SND1
SOBPENSG00000112320.7615.89990479.222200.361902.767802.07210HepG2SRSF7
SOBPENSG00000112320.7534.51710319.230400.743509.187308.28610HepG2SRSF9
SOBPENSG00000112320.7573.68390782.24260-0.447405.155604.49840HepG2SSB
SOBPENSG00000112320.7639.07660487.666300.390003.414902.73780HepG2SUCLG1
SOBPENSG00000112320.7803.77930352.701501.1883023.2803021.87380HepG2TAF15
SOBPENSG00000112320.7684.23580378.314400.854806.023003.90170HepG2TRA2A
SOBPENSG00000112320.7608.05520329.454400.8840013.2710012.16780HepG2TRIM56
SOBPENSG00000112320.7398.03660249.947900.671203.978302.10810HepG2TROVE2
SOBPENSG00000112320.7566.30820424.272100.416502.681101.82260HepG2TUFM
SOBPENSG00000112320.71117.86450636.590300.812202.212801.34110HepG2U2AF2
SOBPENSG00000112320.7326.23760449.07330-0.461002.099301.37620HepG2UBE2L3
SOBPENSG00000112320.7508.68660630.14560-0.308902.351501.69930HepG2UPF1
SOBPENSG00000112320.71088.30690608.380400.8389013.4530012.28090HepG2UTP3
SOBPENSG00000112320.7334.02360744.52940-1.1564014.6874013.33710HepG2ZC3H8
SOBPENSG00000112320.7375.27090693.03920-0.8850016.1526015.10430HepG2ZNF622
SOBPENSG00000112320.7739.75350376.431200.974608.809106.41350HepG2ZRANB2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SOBP is not available on ENCORE database.





5 RBPs can affect the splicing of SOBP :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESOBPENSG00000112320.7chr6+107908283107908379107854662107854814107954717107956673-0.400000.000030.00394excludedHepG2RBM22
SESOBPENSG00000112320.7chr6+1079082831079083791078546621078548141079547171079566730.391000.000020.00084includedHepG2HNRNPK
SESOBPENSG00000112320.7chr6+1078506621078508151078274451078276311078546621078548140.352000.002160.02691includedHepG2U2AF2
SESOBPENSG00000112320.7chr6+1078506621078508151078274451078276311078546621078548140.173000.001310.03179includedHepG2SRSF1
SESOBPENSG00000112320.7chr6+107908283107908379107854662107854814107954717107956673-0.325000.000000.00010excludedHepG2SF3A3
MXESOBPENSG00000112320.7chr6+107908283107908379107954717107956673107854662107854814107979410107981357-0.192000.000310.015362includedHepG2SF3A3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SOBP is not avaliable on ENCORE database.