PHGDH

General Information

Gene Name       : PHGDH
Gene ID             : ENSG00000092621.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PHGDH)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PHGDHENSG00000092621.1217.6515.4816.56ENCSR000AEF
HepG2PHGDHENSG00000092621.12171.19117.61144.40ENCSR985KAT
K562PHGDHENSG00000092621.1245.9638.9642.46ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PHGDH is not avaliable on ENCORE database.



Proteins bound to RNA
  • PHGDH RNA is bound by 23 proteins.  







eCLIP assay for PHGDH is not avaliable on ENCORE database.





23 proteins are bound to PHGDH RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1120286657120286713+3'-UTR,CDS3.881935.73518HepG2G3BP1
chr1120286657120286704+3'-UTR,CDS3.228777.98960K562YBX3
chr1120286749120286805+3'-UTR4.734935.42839K562PABPC4
chr1120286651120286705+3'-UTR,CDS3.675816.89850HepG2LARP4
chr1120286716120286732+3'-UTR3.030336.17212K562YBX3
chr1120286732120286763+3'-UTR3.374369.50094K562YBX3
chr1120262539120262613+5'-UTR,intron-Distal3.953773.79098HepG2SUGP2
chr1120254609120254745+5'-UTR,CDS,intron-Distal3.775273.77213K562SND1
chr1120254620120254647+5'-UTR,CDS,intron-Distal3.7545611.49162K562YBX3
chr1120277959120278065+CDS3.763914.31260K562SND1
chr1120263851120263899+CDS3.399817.79660K562YBX3
chr1120283008120283048+CDS,intron-Proximal4.844438.83026K562RPS3
chr1120269659120269720+CDS4.1605720.49693K562RPS3
chr1120286507120286582+CDS,intron-Proximal4.8235220.26606K562RPS3
chr1120279775120279845+CDS4.8125513.86090HepG2G3BP1
chr1120277991120278067+CDS,intron-Proximal3.974479.56778HepG2G3BP1
chr1120269474120269527+CDS4.5722713.73762K562RPS3
chr1120286582120286643+CDS3.109514.91261HepG2G3BP1
chr1120265998120266067+CDS,intron-Proximal5.3909915.19084K562RPS3
chr1120254675120254710+CDS,intron-Distal3.211196.38612K562YBX3
chr1120277986120278062+CDS4.4135321.59960K562RPS3
chr1120269626120269725+CDS,intron-Proximal6.3205019.68035HepG2G3BP1
chr1120279736120279775+CDS,intron-Proximal3.609517.78330HepG2G3BP1
chr1120286593120286626+CDS4.330324.24238HepG2RPS3
chr1120284364120284452+CDS,intron-Proximal4.424517.73763HepG2BUD13
chr1120263806120263845+CDS4.8995210.22063K562RPS3
chr1120269471120269529+CDS,intron-Proximal3.9190212.86643HepG2G3BP1
chr1120277936120277986+CDS3.3092413.81508K562RPS3
chr1120266043120266064+CDS3.228215.27398HepG2G3BP1
chr1120283050120283125+CDS3.766958.79701HepG2G3BP1
chr1120269624120269730+CDS,intron-Proximal3.355724.85577K562ZNF622
chr1120285466120285550+CDS4.716439.14318HepG2RPS3
chr1120263867120263922+CDS3.138266.39725HepG2G3BP1
chr1120277270120277350+CDS3.764276.26672HepG2RPS3
chr1120277272120277335+CDS3.8938414.91304K562RPS3
chr1120263824120263850+CDS3.276856.56666K562YBX3
chr1120277987120278067+CDS,intron-Proximal3.974386.73537HepG2RPS3
chr1120269632120269746+CDS,intron-Proximal3.100703.40025HepG2UCHL5
chr1120279845120279890+CDS,intron-Proximal3.054704.91261HepG2G3BP1
chr1120283007120283050+CDS,intron-Proximal3.045154.43759HepG2G3BP1
chr1120277335120277388+CDS3.0797210.48005K562RPS3
chr1120263858120263928+CDS4.5275022.32117K562RPS3
chr1120279771120279833+CDS5.2937417.96066K562RPS3
chr1120279860120279890+CDS,intron-Proximal4.779799.52428K562RPS3
chr1120265998120266035+CDS,intron-Proximal3.576883.01531K562YBX3
chr1120269625120269734+CDS,intron-Proximal3.271276.59690HepG2GRWD1
chr1120263806120263867+CDS3.801857.78330HepG2G3BP1
chr1120282924120283034+CDS,intron-Proximal4.047247.56784HepG2SF3B4
chr1120254657120254692+CDS,intron-Distal4.178673.88780HepG2G3BP1
chr1120284476120284512+CDS5.087158.81740K562RPS3
chr1120285474120285663+CDS4.6914435.01500K562RPS3
chr1120286508120286567+CDS,intron-Proximal4.314114.20416HepG2RPS3
chr1120277295120277377+CDS5.154183.92758K562PCBP1
chr1120254676120254752+CDS,intron-Distal6.9530514.85566K562RPS3
chr1120283052120283115+CDS4.867324.24238HepG2RPS3
chr1120263858120263941+CDS3.573036.26672HepG2RPS3
chr1120277928120278020+CDS3.079675.14064K562METAP2
chr1120286506120286538+CDS,intron-Proximal3.456934.37595HepG2LARP4
chr1120286582120286642+CDS4.455049.00944K562RPS3
chr1120269626120269640+CDS,intron-Proximal3.368205.30095HepG2PPIG
chr1120279736120279771+CDS,intron-Proximal5.610689.53134K562RPS3
chr1120254657120254744+CDS,intron-Distal4.388778.03807K562RBM15
chr1120279712120279770+CDS,intron-Proximal4.908235.40008K562SF3B4
chr1120283059120283116+CDS5.7032318.07369K562RPS3
chr1120273348120273405+intron-Distal4.7289317.65119HepG2HNRNPM
chr1120257485120257533+intron-Distal4.634223.18269HepG2XPO5
chr1120276136120276200+intron-Distal3.036603.45912HepG2HNRNPC
chr1120275349120275464+intron-Distal3.117056.43015HepG2HNRNPK
chr1120269333120269396+intron-Distal,intron-Proximal4.584074.84268K562SF3B4
chr1120272462120272536+intron-Distal,intron-Proximal4.043563.91671HepG2RBFOX2
chr1120274207120274241+intron-Distal3.238363.39857HepG2HNRNPM
chr1120279918120279990+intron-Distal,intron-Proximal4.6638110.43503HepG2EFTUD2
chr1120284523120284629+intron-Distal,intron-Proximal3.865803.57018HepG2HNRNPK
chr1120272286120272443+intron-Distal,intron-Proximal3.741178.58854HepG2RBFOX2
chr1120273834120273874+intron-Distal4.419644.64592HepG2HNRNPM
chr1120259055120259150+intron-Distal3.747674.38996HepG2HNRNPM
chr1120273405120273460+intron-Distal4.8051410.78639HepG2HNRNPM
chr1120269334120269394+intron-Distal,intron-Proximal4.477563.82050HepG2SF3B4
chr1120259283120259369+intron-Distal3.881213.16028HepG2SUGP2
chr1120254835120254948+intron-Distal,intron-Proximal3.560244.77128HepG2RBFOX2
chr1120268790120268961+intron-Distal5.440735.59072K562EIF4G2
chr1120285355120285422+intron-Proximal5.387956.92814HepG2SF3B4
chr1120269411120269469+intron-Proximal5.386119.92460HepG2SF3B4
chr1120263954120264027+intron-Proximal4.626926.01148HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PHGDH is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PHGDH is not available on ENCORE database.

  • 160 RBPs can affect the levels of PHGDH.  








The Knockdown/knockout RNA-Seq assay for PHGDH is not available on ENCORE database.





160 RBPs can affect the gene expression of PHGDH :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PHGDHENSG00000092621.7992.867101706.21480-0.781107.822506.90480HepG2ACO1
PHGDHENSG00000092621.72789.397601053.628701.4045035.0591032.24480HepG2ADAR
PHGDHENSG00000092621.71268.483605151.46300-2.0219056.3256054.42090HepG2AKAP1
PHGDHENSG00000092621.72321.603603422.94860-0.560105.552504.09570HepG2AKAP8
PHGDHENSG00000092621.71314.310301714.04990-0.383103.136302.32570HepG2AKAP8L
PHGDHENSG00000092621.72299.818804262.22240-0.8901014.9567013.27880HepG2ASCC1
PHGDHENSG00000092621.71527.866204345.46370-1.508006.722105.72530HepG2AUH
PHGDHENSG00000092621.7785.761901165.22810-0.568406.845105.70470HepG2CALR
PHGDHENSG00000092621.77461.569104049.463100.8816016.4202014.72570HepG2CIRBP
PHGDHENSG00000092621.71444.429601705.62620-0.239803.074002.38040HepG2CKAP4
PHGDHENSG00000092621.71353.382602484.79950-0.876602.008101.36120HepG2CNOT7
PHGDHENSG00000092621.72321.972701757.758800.401502.701701.60900HepG2CPSF7
PHGDHENSG00000092621.72595.330502331.952700.154302.025401.37610HepG2DAZAP1
PHGDHENSG00000092621.72247.835601577.904100.5104012.8492011.32960HepG2DDX19B
PHGDHENSG00000092621.72669.053901314.863601.0213022.5182020.83430HepG2DDX21
PHGDHENSG00000092621.72108.945301287.047100.7124012.7532010.85050HepG2DDX24
PHGDHENSG00000092621.73086.147704934.32400-0.677008.889807.82210HepG2DDX3X
PHGDHENSG00000092621.71526.943601192.591700.356403.282401.80800HepG2DDX52
PHGDHENSG00000092621.7619.543501441.37540-1.218205.783004.71430HepG2DDX55
PHGDHENSG00000092621.72348.734001566.548000.584202.995601.94780HepG2DDX5
PHGDHENSG00000092621.75431.976904239.599600.357402.555301.96070HepG2DDX6
PHGDHENSG00000092621.71412.225201023.276200.464703.239902.18260HepG2DHX30
PHGDHENSG00000092621.72930.813301632.328900.8443029.1953027.58840HepG2DKC1
PHGDHENSG00000092621.71932.398901060.924600.8650022.7211020.91950HepG2DNAJC21
PHGDHENSG00000092621.71407.989301051.621300.420907.414406.41770HepG2DNAJC2
PHGDHENSG00000092621.71756.560804074.72360-1.2139025.6639023.99050HepG2EIF2S1
PHGDHENSG00000092621.73927.863501618.985201.2786036.6213033.40340HepG2EIF2S2
PHGDHENSG00000092621.7512.071901155.00650-1.1735018.4095016.34300HepG2EIF3D
PHGDHENSG00000092621.71641.719601241.911100.402504.353603.03260HepG2EIF3G
PHGDHENSG00000092621.72927.929204502.61010-0.620906.712705.71450HepG2EIF4A3
PHGDHENSG00000092621.71795.222402300.85350-0.358003.625102.68850HepG2EIF4G1
PHGDHENSG00000092621.71276.818002204.02750-0.7876011.9711010.35010HepG2EIF4G2
PHGDHENSG00000092621.72690.721301848.563300.541506.153704.59330HepG2ESF1
PHGDHENSG00000092621.79138.370704990.076500.872807.433806.52860HepG2ETF1
PHGDHENSG00000092621.71610.637901176.559300.453003.866801.83970HepG2EXOSC9
PHGDHENSG00000092621.7599.667701032.35310-0.7837012.127509.70690HepG2FAM120A
PHGDHENSG00000092621.7952.920101253.20300-0.395203.580402.30380HepG2FASTKD2
PHGDHENSG00000092621.71207.843402154.28060-0.834803.054902.24980HepG2FIP1L1
PHGDHENSG00000092621.71250.581703291.53240-1.3962045.0007042.19430HepG2FUBP3
PHGDHENSG00000092621.73674.253904544.27160-0.306602.329801.69290HepG2FXR1
PHGDHENSG00000092621.71739.270604214.78030-1.2770026.2352024.25710HepG2G3BP1
PHGDHENSG00000092621.71360.914801028.374400.404103.325802.33370HepG2GEMIN5
PHGDHENSG00000092621.72383.72320895.491501.4124018.7733017.25970HepG2GPKOW
PHGDHENSG00000092621.72285.787401628.814600.4888010.213408.49510HepG2HDGF
PHGDHENSG00000092621.73666.152602100.076200.803705.604703.58480HepG2HNRNPA0
PHGDHENSG00000092621.72400.026901071.089301.1639028.3265026.66060HepG2HNRNPA1
PHGDHENSG00000092621.71367.261302143.26520-0.6485014.8514013.04000HepG2HNRNPA2B1
PHGDHENSG00000092621.72016.740601348.839000.5802012.7678011.37920HepG2HNRNPF
PHGDHENSG00000092621.72119.321404269.47630-1.0105022.2068020.40970HepG2HNRNPK
PHGDHENSG00000092621.71692.98420854.600400.986106.233105.33030HepG2HNRNPLL
PHGDHENSG00000092621.71662.860201183.531900.490509.093908.04250HepG2HNRNPU
PHGDHENSG00000092621.72481.521501328.223300.9016021.6157019.81720HepG2IGF2BP1
PHGDHENSG00000092621.73143.618404283.98390-0.446504.276303.45370HepG2IGF2BP2
PHGDHENSG00000092621.71792.383304021.33390-1.165806.145404.70910HepG2IGF2BP3
PHGDHENSG00000092621.71038.539001208.93500-0.219202.332301.65230HepG2ILF2
PHGDHENSG00000092621.73389.010902366.584100.518004.183102.66560HepG2KHDRBS1
PHGDHENSG00000092621.72521.777004309.42000-0.773108.309606.48990HepG2KHSRP
PHGDHENSG00000092621.72421.696201559.558800.6348020.7850018.35970HepG2KIF1C
PHGDHENSG00000092621.72550.761404545.86400-0.8336012.9882011.60750HepG2MAGOH
PHGDHENSG00000092621.73529.045804571.09090-0.373302.338901.75610HepG2MATR3
PHGDHENSG00000092621.7500.702201208.79550-1.2715011.806109.77550HepG2METAP2
PHGDHENSG00000092621.72888.942404678.59020-0.695508.615707.53010HepG2NCBP2
PHGDHENSG00000092621.71667.126402312.37430-0.472006.907605.70990HepG2NOL12
PHGDHENSG00000092621.71793.46170757.897701.242609.084207.78580HepG2NSUN2
PHGDHENSG00000092621.72758.238204165.78370-0.594806.885305.75500HepG2PABPC4
PHGDHENSG00000092621.73643.492304409.68860-0.275404.735803.97710HepG2PCBP1
PHGDHENSG00000092621.72295.346401055.612101.1205023.4883021.51340HepG2PPIL4
PHGDHENSG00000092621.72345.719901300.216700.851207.560405.64050HepG2PRPF6
PHGDHENSG00000092621.71838.367804486.95630-1.2873074.6654072.74180HepG2PTBP1
PHGDHENSG00000092621.73959.490802207.440500.8428018.9825017.60650HepG2PUF60
PHGDHENSG00000092621.73105.733802343.385600.4062011.6038010.56420HepG2PUM1
PHGDHENSG00000092621.71893.461502341.61790-0.306503.033202.33000HepG2PUM2
PHGDHENSG00000092621.72710.919101737.858600.6414019.8532018.47260HepG2PUS1
PHGDHENSG00000092621.73336.373804859.62660-0.5426011.7495010.59540HepG2QKI
PHGDHENSG00000092621.7352.891401193.21910-1.757608.728607.52140HepG2RAVER1
PHGDHENSG00000092621.71155.468201782.84800-0.6257010.028208.53950HepG2RBM15
PHGDHENSG00000092621.71341.367604170.59230-1.636507.165006.42270HepG2RBM22
PHGDHENSG00000092621.72783.312204410.36980-0.664106.323205.34110HepG2RBM25
PHGDHENSG00000092621.72641.588904993.60700-0.9187024.7493023.45310HepG2NELFE
PHGDHENSG00000092621.73212.141804650.76570-0.5339015.6928014.42120HepG2RECQL
PHGDHENSG00000092621.7899.262601453.00130-0.692208.906907.78830HepG2RPLP0
PHGDHENSG00000092621.7283.878601123.90830-1.9852056.1490054.05090HepG2RPS19
PHGDHENSG00000092621.7799.154202046.05680-1.356304.122603.15370HepG2RPS2
PHGDHENSG00000092621.71121.323702088.91600-0.897602.529801.50400HepG2RPS5
PHGDHENSG00000092621.7368.611101099.01960-1.576009.131507.81860HepG2RRP9
PHGDHENSG00000092621.71413.417801053.974800.423206.944505.99160HepG2SAFB2
PHGDHENSG00000092621.73544.787802348.638400.593805.305203.49310HepG2SART3
PHGDHENSG00000092621.7629.144301127.95990-0.8423010.801608.99090HepG2SERBP1
PHGDHENSG00000092621.72496.887804671.62030-0.9038040.7232038.96380HepG2SF3B4
PHGDHENSG00000092621.73004.190602116.776100.5050015.6270014.20880HepG2SLBP
PHGDHENSG00000092621.7704.836901229.09130-0.8022021.2232019.69470HepG2SMN1
PHGDHENSG00000092621.7662.338001219.29120-0.880403.187302.15230HepG2SMNDC1
PHGDHENSG00000092621.71906.109004710.19780-1.305205.575904.93310HepG2SRFBP1
PHGDHENSG00000092621.73603.953904876.11130-0.436208.154407.44190HepG2SRSF1
PHGDHENSG00000092621.71213.711102179.63380-0.8447016.3545015.00970HepG2SRSF5
PHGDHENSG00000092621.71822.297301325.183100.459508.126907.03840HepG2SRSF7
PHGDHENSG00000092621.72712.669403966.93420-0.5483016.7326015.58080HepG2SRSF9
PHGDHENSG00000092621.76124.937504088.985800.582903.141902.60350HepG2SSB
PHGDHENSG00000092621.72026.783501439.722600.493303.842102.40510HepG2STAU1
PHGDHENSG00000092621.73419.905004382.70350-0.357905.968605.19770HepG2TAF15
PHGDHENSG00000092621.71372.36320833.449100.719403.236702.45900HepG2TARDBP
PHGDHENSG00000092621.72082.082303647.45460-0.808904.512803.17310HepG2TBRG4
PHGDHENSG00000092621.7638.50570961.43930-0.590502.517801.56100HepG2TFIP11
PHGDHENSG00000092621.7845.040801149.94140-0.444504.696504.07980HepG2TIAL1
PHGDHENSG00000092621.71827.238101198.912800.607804.410002.58220HepG2TRA2A
PHGDHENSG00000092621.72372.484101843.348600.364002.835502.19950HepG2U2AF1
PHGDHENSG00000092621.71687.375902187.97180-0.374803.283702.15250HepG2UTP18
PHGDHENSG00000092621.71545.972102055.19510-0.410803.643402.97210HepG2UTP3
PHGDHENSG00000092621.73068.330102233.895000.457802.964901.82350HepG2XPO5
PHGDHENSG00000092621.73144.192101412.244201.1546018.1950016.38600HepG2XRN2
PHGDHENSG00000092621.71961.088501193.010600.716906.438404.35530HepG2ZRANB2
PHGDHENSG00000092621.7268.96380670.63290-1.3181016.5352013.77310K562AARS
PHGDHENSG00000092621.7297.71770671.52990-1.173506.202403.73860K562ADAR
PHGDHENSG00000092621.75529.461507332.19530-0.407106.333405.52690K562AGGF1
PHGDHENSG00000092621.74552.515007629.56070-0.744904.521503.67840K562AKAP8L
PHGDHENSG00000092621.7723.531001571.65040-1.119205.591803.73730K562APOBEC3C
PHGDHENSG00000092621.76574.455708005.39520-0.284103.828102.73860K562ATP5C1
PHGDHENSG00000092621.71033.98130796.358100.376603.002301.62560K562BCCIP
PHGDHENSG00000092621.7335.43400657.61800-0.971207.087405.20630K562CCAR1
PHGDHENSG00000092621.75586.822308762.11870-0.649305.882704.12970K562CCDC124
PHGDHENSG00000092621.7720.647501348.88870-0.904406.840305.11600K562CNOT7
PHGDHENSG00000092621.7806.480901221.49010-0.598902.349701.33730K562CPEB4
PHGDHENSG00000092621.7811.48690493.452400.717608.629407.22910K562CPSF6
PHGDHENSG00000092621.7411.91900702.93350-0.771003.862101.61360K562CPSF7
PHGDHENSG00000092621.7306.02880718.22960-1.230809.283406.21160K562YBX3
PHGDHENSG00000092621.76002.751308602.67830-0.519206.643204.36610K562DDX19B
PHGDHENSG00000092621.7335.64180693.10540-1.046207.762504.75780K562DDX1
PHGDHENSG00000092621.71462.912601843.40620-0.333504.154401.94020K562DDX24
PHGDHENSG00000092621.7961.612201739.75620-0.8554016.2797013.62410K562DDX3X
PHGDHENSG00000092621.7220.209301263.36570-2.5203016.1150014.66130K562DDX47
PHGDHENSG00000092621.72225.080701763.873800.335004.322202.57150K562DDX6
PHGDHENSG00000092621.7289.90110707.14060-1.2864011.166308.74180K562DNAJC21
PHGDHENSG00000092621.7371.43340749.55840-1.012906.629804.03090K562DNAJC2
PHGDHENSG00000092621.7435.46320775.38880-0.832405.594203.74750K562EEF2
PHGDHENSG00000092621.71629.629701910.93390-0.229702.458601.33190K562EIF2S1
PHGDHENSG00000092621.77704.741701010.468202.93060301.00000297.00000K562EIF2S2
PHGDHENSG00000092621.745.81510668.88990-3.8679043.5183040.21960K562EIF3A
PHGDHENSG00000092621.7226.32370801.70280-1.8247010.349408.17250K562EIF3D
PHGDHENSG00000092621.7148.349701027.45780-2.7920044.7018041.51540K562EIF3G
PHGDHENSG00000092621.71461.431101817.60160-0.314702.621701.82380K562EIF4A3
PHGDHENSG00000092621.7188.91810717.78180-1.9258017.2918013.54140K562EIF4G1
PHGDHENSG00000092621.71089.403701781.30420-0.709404.400303.22760K562EIF4G2
PHGDHENSG00000092621.7708.409601123.67380-0.665608.846206.58220K562EXOSC5
PHGDHENSG00000092621.7413.37100667.02790-0.690303.383401.44970K562FAM120A
PHGDHENSG00000092621.7737.42770502.097300.554402.995002.10330K562FMR1
PHGDHENSG00000092621.7449.411301890.22670-2.07250101.0107097.78620K562FXR1
PHGDHENSG00000092621.7433.646201046.37670-1.270808.280906.92460K562G3BP2
PHGDHENSG00000092621.7656.25080471.116800.478103.540302.64670K562GPKOW
PHGDHENSG00000092621.72551.488201056.004101.2726038.7385035.78260K562HNRNPA1
PHGDHENSG00000092621.7585.777901262.28500-1.1076010.355807.59460K562HNRNPAB
PHGDHENSG00000092621.7553.45210733.40550-0.406202.994602.37730K562HNRNPC
PHGDHENSG00000092621.7406.84530655.10890-0.687306.623504.77010K562HNRNPF
PHGDHENSG00000092621.72249.822901169.468200.9439026.3728023.87010K562HNRNPU
PHGDHENSG00000092621.75467.22790878.261002.63800130.09840126.39940K562HSPD1
PHGDHENSG00000092621.72612.672801398.460000.901605.613103.93610K562IGF2BP2
PHGDHENSG00000092621.7753.134901231.06640-0.708904.082602.33820K562ILF2
PHGDHENSG00000092621.7389.53610663.88240-0.769205.083003.07330K562KHDRBS1
PHGDHENSG00000092621.7942.12840710.735700.406503.046801.57700K562LARP7
PHGDHENSG00000092621.7884.855501898.54200-1.101408.073406.19180K562MSI2
PHGDHENSG00000092621.7727.005701089.00200-0.583002.215301.48810K562MTPAP
PHGDHENSG00000092621.71095.473901948.80050-0.831005.131703.04740K562NOL12
PHGDHENSG00000092621.71179.93030738.685100.675604.616902.82820K562NONO
PHGDHENSG00000092621.7947.839501209.82670-0.352102.223401.54720K562NSUN2
PHGDHENSG00000092621.7383.420801295.88600-1.7569022.4063019.11380K562PABPC1
PHGDHENSG00000092621.72299.105201435.883300.679004.166502.48610K562PCBP1
PHGDHENSG00000092621.7462.034901306.05950-1.499106.350504.85070K562PCBP2
PHGDHENSG00000092621.7506.359401429.31080-1.4971028.7854026.32760K562PCBP3
PHGDHENSG00000092621.7369.508901096.35230-1.5690039.3139036.71420K562POLR2G
PHGDHENSG00000092621.71187.40060735.637900.690602.493401.71880K562PPIG
PHGDHENSG00000092621.7606.334501199.96200-0.984809.070105.63010K562PPIL4
PHGDHENSG00000092621.7346.45000728.88800-1.073008.228406.93160K562PRPF8
PHGDHENSG00000092621.7257.272101426.56550-2.4712011.6836010.37580K562PTBP1
PHGDHENSG00000092621.7889.372301943.41540-1.127707.586406.23140K562PUF60
PHGDHENSG00000092621.72811.876302067.992000.443202.255301.30240K562PUM1
PHGDHENSG00000092621.71498.807502025.34000-0.434302.461101.55430K562PUM2
PHGDHENSG00000092621.73289.033407565.86590-1.2018032.3135030.42890K562PUS1
PHGDHENSG00000092621.7368.84400998.17290-1.436305.497603.39980K562RAVER1
PHGDHENSG00000092621.73485.176407372.26450-1.0809026.6925024.76530K562RBM15
PHGDHENSG00000092621.73089.207801277.259401.2741020.6897016.88940K562RBM17
PHGDHENSG00000092621.7732.722901367.07400-0.899803.232802.31840K562RBM22
PHGDHENSG00000092621.7483.013301438.82120-1.574806.779004.97850K562NELFE
PHGDHENSG00000092621.7738.713701011.83790-0.453905.073402.94440K562RPS10
PHGDHENSG00000092621.7111.50560742.25930-2.7348027.3225024.81230K562RPS19
PHGDHENSG00000092621.7451.910401203.05190-1.4126015.3488011.55730K562RPS3A
PHGDHENSG00000092621.7614.97260976.80660-0.667605.803904.24010K562SAFB
PHGDHENSG00000092621.7467.728701009.93580-1.1105017.2603014.03100K562SDAD1
PHGDHENSG00000092621.7538.553201194.01670-1.148707.801506.48830K562SF3A3
PHGDHENSG00000092621.7825.991801087.15350-0.396402.216901.45320K562SF3B4
PHGDHENSG00000092621.78415.186105358.647800.651002.633801.37700K562SFPQ
PHGDHENSG00000092621.7473.68500724.20590-0.612503.487102.05060K562SLBP
PHGDHENSG00000092621.7747.610401052.53970-0.493505.826603.27900K562SLTM
PHGDHENSG00000092621.7676.540501262.05690-0.899503.241101.33410K562SMN1
PHGDHENSG00000092621.7463.200601223.31630-1.4011015.6461013.68220K562SRPK2
PHGDHENSG00000092621.7467.303801398.68070-1.581606.387305.32390K562SRSF1
PHGDHENSG00000092621.73027.789701321.371701.196106.072604.41220K562SRSF5
PHGDHENSG00000092621.7835.661001247.94010-0.578608.116405.58180K562SRSF9
PHGDHENSG00000092621.72346.288401059.806901.146504.425102.75130K562SSB
PHGDHENSG00000092621.7371.37440705.37220-0.925506.921305.26480K562SUPV3L1
PHGDHENSG00000092621.7744.739601099.63920-0.562206.826605.52700K562SYNCRIP
PHGDHENSG00000092621.7383.38510643.20390-0.746505.272002.98560K562TFIP11
PHGDHENSG00000092621.73017.190301365.205201.144006.657805.30300K562TIA1
PHGDHENSG00000092621.72371.186201340.544400.822706.198804.40450K562TRA2A
PHGDHENSG00000092621.71103.569101393.40810-0.336404.189302.62740K562TROVE2
PHGDHENSG00000092621.7745.129801046.81990-0.490402.765601.96180K562U2AF2
PHGDHENSG00000092621.71130.82910746.724200.598605.427103.95470K562UCHL5
PHGDHENSG00000092621.7516.026301141.55990-1.1455011.565309.97130K562WDR43
PHGDHENSG00000092621.72448.217001680.260600.542902.820601.51400K562WRN
PHGDHENSG00000092621.72552.179501596.650900.676603.602902.59300K562ZC3H8
PHGDHENSG00000092621.7856.876401169.31520-0.448504.003401.80860K562ZNF800
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PHGDH is not available on ENCORE database.





1 RBPs can affect the splicing of PHGDH :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXEPHGDHENSG00000092621.7chr1+120266941120267092120267407120267498120265998120266064120269473120269528-0.831000.000420.035772includedK562LARP4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PHGDH is not avaliable on ENCORE database.