SYNRG

General Information

Gene Name       : SYNRG
Gene ID             : ENSG00000275066.4
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SYNRG)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SYNRGENSG00000275066.417.1720.2018.69ENCSR000AEF
HepG2SYNRGENSG00000275066.48.4112.6710.54ENCSR985KAT
K562SYNRGENSG00000275066.415.7715.7615.77ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SYNRG is not avaliable on ENCORE database.



Proteins bound to RNA
  • SYNRG RNA is bound by 11 proteins.  







eCLIP assay for SYNRG is not avaliable on ENCORE database.





11 proteins are bound to SYNRG RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr173587802735878110-3'-UTR,intron-Distal5.155356.34419K562PUM2
chr173587554235875632-3'-UTR,intron-Distal,intron-Proximal,polyA_site4.475903.52477K562AKAP1
chr173594543235945528-3'-UTR,CDS,intron-Distal,intron-Proximal3.296396.38443HepG2BCLAF1
chr173587613335876169-3'-UTR,intron-Distal4.463624.56348K562UPF1
chr173587653635876576-3'-UTR,intron-Distal3.636673.77931K562UPF1
chr173587595635876067-3'-UTR,intron-Distal4.2772810.88945K562UPF1
chr173587707035877137-3'-UTR,intron-Distal4.044655.20580K562AKAP1
chr173594462635944727-3'-UTR,CDS,intron-Distal,intron-Proximal4.101554.10688K562KHSRP
chr173596040935960454-5'-UTR,CDS,intron-Distal,intron-Proximal4.223453.79199HepG2PPIG
chr173590060235900650-CDS,intron-Distal,intron-Proximal3.469143.87469HepG2BCLAF1
chr173596923335969396-CDS,intron-Distal3.726935.79041HepG2PRPF4
chr173593078535930985-CDS,intron-Distal,intron-Proximal3.6791610.92438HepG2BCLAF1
chr173594475935944875-CDS,intron-Distal,intron-Proximal3.366973.73423K562UCHL5
chr173593195735932047-CDS,intron-Distal3.169117.43909HepG2BCLAF1
chr173594482035944868-CDS,intron-Distal,intron-Proximal3.067344.51709HepG2BCLAF1
chr173588058135880654-CDS,intron-Distal,intron-Proximal5.288998.38577HepG2PRPF8
chr173589614235896231-CDS,intron-Distal,intron-Proximal3.274863.17233HepG2BCLAF1
chr173595634635956392-CDS,intron-Distal,intron-Proximal3.345843.31745K562ZNF622
chr173594475535944820-CDS,intron-Distal,intron-Proximal3.445385.15776HepG2BCLAF1
chr173592159535921692-CDS,intron-Distal,intron-Proximal4.060029.09836HepG2BCLAF1
chr173592888835929015-CDS,intron-Distal,intron-Proximal3.397219.57541HepG2BCLAF1
chr173593188435931957-CDS,intron-Distal,intron-Proximal3.715079.08790HepG2BCLAF1
chr173593750735937581-CDS,intron-Distal,intron-Proximal5.012877.04013HepG2BCLAF1
chr173589927635899344-CDS,intron-Distal,intron-Proximal3.354963.86355HepG2PPIG
chr173588059435880641-intron-Distal,intron-Proximal5.082405.65342K562AQR
chr173588018235880258-intron-Distal,intron-Proximal4.518454.85612K562PRPF8
chr173592700935927125-intron-Distal3.207303.29251K562KHSRP
chr173595048335950637-intron-Distal3.051784.35941K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SYNRG is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SYNRG is not available on ENCORE database.

  • 49 RBPs can affect the levels of SYNRG.  








The Knockdown/knockout RNA-Seq assay for SYNRG is not available on ENCORE database.





49 RBPs can affect the gene expression of SYNRG :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SYNRGENSG00000006114.11471.44430766.04580-0.700305.223603.93000HepG2BCCIP
SYNRGENSG00000006114.111224.75750747.058400.713107.884906.63260HepG2CIRBP
SYNRGENSG00000006114.11603.15320755.16330-0.324302.255101.33780HepG2YBX3
SYNRGENSG00000006114.11547.60440734.94460-0.424504.921604.09140HepG2DNAJC2
SYNRGENSG00000006114.11522.86770693.39740-0.407202.769701.59880HepG2EIF2S2
SYNRGENSG00000006114.111353.12100830.883800.703505.590704.68270HepG2EIF4A3
SYNRGENSG00000006114.11638.08570813.86240-0.351002.537801.73760HepG2EWSR1
SYNRGENSG00000006114.11413.85250649.47240-0.650204.232402.10640HepG2EXOSC9
SYNRGENSG00000006114.11883.72820525.421400.750008.977707.60360HepG2FUBP3
SYNRGENSG00000006114.11576.61850827.22380-0.520706.774805.86410HepG2HNRNPU
SYNRGENSG00000006114.111014.67890790.444300.360202.324501.70010HepG2IGF2BP2
SYNRGENSG00000006114.11680.17860844.98550-0.313003.203302.41910HepG2ILF2
SYNRGENSG00000006114.11513.77870709.39200-0.465403.265501.94710HepG2LIN28B
SYNRGENSG00000006114.111264.37080838.431300.592605.395204.48720HepG2MAGOH
SYNRGENSG00000006114.111109.53590863.040200.362402.208001.64030HepG2NCBP2
SYNRGENSG00000006114.111179.12850768.707400.617105.723404.69730HepG2PABPC4
SYNRGENSG00000006114.11607.60560751.60310-0.306802.643602.04720HepG2PCBP1
SYNRGENSG00000006114.11956.31830764.754900.322403.063102.49300HepG2PTBP1
SYNRGENSG00000006114.11883.662301029.95360-0.221002.117101.58460HepG2PUM1
SYNRGENSG00000006114.111027.39070848.316600.276202.745902.13140HepG2PUS1
SYNRGENSG00000006114.111211.88950828.311100.548906.940006.01570HepG2QKI
SYNRGENSG00000006114.111711.644101139.458600.5869010.130409.27810HepG2RBM22
SYNRGENSG00000006114.111199.82870751.721900.674508.822007.66820HepG2RBM25
SYNRGENSG00000006114.11589.33420814.63050-0.467103.111002.05570HepG2RBM27
SYNRGENSG00000006114.11949.02960792.661300.259602.020701.48270HepG2RECQL
SYNRGENSG00000006114.11417.91790574.75510-0.459702.375301.64070HepG2RRP9
SYNRGENSG00000006114.11593.97230736.69250-0.310702.734602.09260HepG2SAFB2
SYNRGENSG00000006114.111426.009501067.237200.418002.028501.45000HepG2SF3A3
SYNRGENSG00000006114.111058.70320842.325600.329702.268901.62720HepG2SF3B1
SYNRGENSG00000006114.111825.250901286.973300.5040010.539109.73150HepG2SRFBP1
SYNRGENSG00000006114.111418.18680831.102900.7708016.8431015.88560HepG2SRSF1
SYNRGENSG00000006114.111137.49890957.969000.247702.242401.67180HepG2SRSF5
SYNRGENSG00000006114.111292.592501089.484600.246502.606201.99860HepG2SUCLG1
SYNRGENSG00000006114.11549.85820810.98250-0.560607.615706.75700HepG2TRIM56
SYNRGENSG00000006114.111502.10530789.524500.9278014.2100012.75030HepG2U2AF1
SYNRGENSG00000006114.11461.23450738.07830-0.678305.466304.45830HepG2XRN2
SYNRGENSG00000006114.111045.73570810.014400.368404.594903.76470HepG2ZC3H8
SYNRGENSG00000006114.111327.454001040.942800.350705.271204.57790HepG2ZNF622
SYNRGENSG00000006114.112313.126101571.029600.558006.437405.60370K562AQR
SYNRGENSG00000006114.11897.446201239.07200-0.465406.203105.19000K562EIF2S2
SYNRGENSG00000006114.111209.62630814.509500.570506.305505.07480K562EIF4A3
SYNRGENSG00000006114.11943.480401267.78190-0.426203.709102.71720K562FIP1L1
SYNRGENSG00000006114.111288.50650847.055800.605107.226906.31190K562FXR1
SYNRGENSG00000006114.11892.201601651.18990-0.8881015.7304013.89480K562GRSF1
SYNRGENSG00000006114.111236.74950887.933700.477904.921704.14820K562HNRNPC
SYNRGENSG00000006114.111264.986501718.77770-0.442304.081303.12100K562HSPD1
SYNRGENSG00000006114.11875.514501221.47040-0.480407.214705.96090K562MTPAP
SYNRGENSG00000006114.111352.085701089.665200.311202.732201.93690K562POLR2G
SYNRGENSG00000006114.11953.293501439.25050-0.594306.551905.19420K562PPIG
SYNRGENSG00000006114.11547.83550796.13740-0.539304.637303.42190K562PSIP1
SYNRGENSG00000006114.112641.456002198.670200.264602.287401.54570K562PUF60
SYNRGENSG00000006114.111534.410501195.343900.360202.486901.96560K562PUS1
SYNRGENSG00000006114.11555.09470834.34080-0.587903.520302.00420K562RRP9
SYNRGENSG00000006114.111497.031501018.980800.554907.251706.11720K562SRSF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SYNRG is not available on ENCORE database.





16 RBPs can affect the splicing of SYNRG :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESYNRGENSG00000006114.11chr17-3588028135880317358789893587917435880640358807510.496000.000000.00000includedK562SRSF1
SESYNRGENSG00000006114.11chr17-359392273593953035937544359377113594475535944867-0.327000.000530.08863excludedK562FTO
SESYNRGENSG00000006114.11chr17-3588028135880317358789893587917435880640358807510.293000.000170.05082includedK562PUM1
SESYNRGENSG00000006114.11chr17-3593922735939530359375443593771135944755359448670.387000.001430.01907includedHepG2U2AF2
SESYNRGENSG00000006114.11chr17-358802813588031735878989358791743588064035880751-0.605000.000000.00003excludedHepG2U2AF2
SESYNRGENSG00000006114.11chr17-3588028135880317358789893587917435880640358807510.227000.010690.08565includedK562AQR
SESYNRGENSG00000006114.11chr17-358960803589622935880640358807513589842535898546-0.125000.000060.00112excludedK562AQR
SESYNRGENSG00000006114.11chr17-3588028135880317358789893587917435880640358807510.332000.001740.06033includedK562FXR1
SESYNRGENSG00000006114.11chr17-3588988435889953358806403588075135896080358962290.099000.008450.09241includedK562PUS1
SESYNRGENSG00000006114.11chr17-358802813588031735878989358791743588064035880751-0.415000.000090.00963excludedHepG2NCBP2
SESYNRGENSG00000006114.11chr17-358802813588031735878989358791743588064035880751-0.459000.001670.06569excludedHepG2SFPQ
SESYNRGENSG00000006114.11chr17-358898843588995335880640358807513589608035896229-0.155000.000310.05281excludedK562LARP4
SESYNRGENSG00000006114.11chr17-358802813588031735878989358791743588064035880751-0.482000.000010.00291excludedHepG2DDX6
SESYNRGENSG00000006114.11chr17-359392273593953035937544359377113594475535944867-0.318000.000110.00532excludedHepG2SF3A3
SESYNRGENSG00000006114.11chr17-3588028135880317358789893587917435880640358807510.442000.000010.00264includedHepG2SUPV3L1
SESYNRGENSG00000006114.11chr17-359392273593953035937544359377113594475535944867-0.282000.004230.06339excludedK562U2AF2
SESYNRGENSG00000006114.11chr17-358802813588031735878989358791743588064035880751-0.516000.000350.00829excludedK562U2AF2
SESYNRGENSG00000006114.11chr17-3588028135880317358789893587917435880640358807510.517000.000510.01621includedK562AGGF1
SESYNRGENSG00000006114.11chr17-3588028135880317358789893587917435880640358807510.332000.000720.08925includedK562ZC3H8
SESYNRGENSG00000006114.11chr17-3593922735939530359375443593771135944755359448670.303000.002220.07258includedK562PTBP1
A3SSSYNRGENSG00000006114.11chr17-3589842535898583358984253589852235899293358993870.276000.000000.00000longerK562AQR
A3SSSYNRGENSG00000006114.11chr17-3589929335899387358992933589934735900481359006450.114000.004770.02770longerK562AQR
A3SSSYNRGENSG00000006114.11chr17-3594652635946750359465263594665735956269359563910.105000.002900.01791longerK562AQR
A3SSSYNRGENSG00000006114.11chr17-3587911235879346358791123587917435880640358807510.161000.003100.01899longerK562AQR
A5SSSYNRGENSG00000006114.11chr17-3589913835899347358992933589934735898425358985220.107000.000000.00015longerK562AQR
A5SSSYNRGENSG00000006114.11chr17-358991383589934735899293358993473589842535898522-0.101000.000630.02737shorterHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SYNRG is not avaliable on ENCORE database.