HABP4

General Information

Gene Name       : HABP4
Gene ID             : ENSG00000130956.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HABP4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HABP4ENSG00000130956.138.328.528.42ENCSR000AEF
HepG2HABP4ENSG00000130956.1315.8723.9219.89ENCSR985KAT
K562HABP4ENSG00000130956.130.831.341.08ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HABP4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HABP4 RNA is bound by 19 proteins.  







eCLIP assay for HABP4 is not avaliable on ENCORE database.





19 proteins are bound to HABP4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr99921248999212560+5'-UTR4.574578.97908HepG2DDX3X
chr99922069699220752+CDS3.577806.45347HepG2GRWD1
chr99921257599212609+CDS4.732455.69834HepG2NKRF
chr99921273499212791+CDS4.427206.05264HepG2DDX3X
chr99922799099228064+CDS,intron-Distal,intron-Proximal3.213767.16988HepG2PPIG
chr99921284499212889+CDS3.690005.02437HepG2XRN2
chr99921287599212913+CDS,intron-Proximal3.709305.34741HepG2NKRF
chr99921272799212806+CDS3.777287.20706HepG2CSTF2T
chr99925038999250450+CDS3.631585.14253HepG2GRWD1
chr99923329499233327+CDS,intron-Distal3.284403.63043HepG2GRWD1
chr99922759699227674+CDS,intron-Distal,intron-Proximal3.227576.38973HepG2U2AF2
chr99924686399246912+CDS3.021636.91015HepG2GRWD1
chr99924676299246912+CDS3.8488121.51843HepG2BCLAF1
chr99923506799235136+intron-Distal4.1192214.43244HepG2SUGP2
chr99924287099242981+intron-Distal4.118657.89233HepG2HNRNPL
chr99923525899235308+intron-Distal3.548114.59863HepG2PTBP1
chr99922755999227589+intron-Distal,intron-Proximal4.247893.45799HepG2U2AF2
chr99921466599214726+intron-Distal5.3761910.09004HepG2QKI
chr99923343599233492+intron-Distal,intron-Proximal3.112963.84371HepG2HNRNPC
chr99923532199235429+intron-Distal5.0313811.67285HepG2MATR3
chr99923581999235877+intron-Distal3.976993.89149HepG2HNRNPK
chr99923446599234521+intron-Distal3.515909.49454HepG2SUGP2
chr99923492099234976+intron-Distal3.272763.30705HepG2MATR3
chr99923505899235150+intron-Distal4.978707.57837HepG2MATR3
chr99924640299246462+intron-Distal4.242863.12827HepG2U2AF2
chr99923542099235500+intron-Distal4.6647318.32725HepG2SUGP2
chr99923537299235415+intron-Distal4.0969510.73282HepG2SUGP2
chr99923544799235506+intron-Distal4.295925.42643HepG2MATR3
chr99921297399213089+intron-Distal,intron-Proximal3.8737723.85362HepG2NKRF
chr99924213799242229+intron-Distal3.612524.74790HepG2ILF3
chr99921311399213155+intron-Distal3.833593.56049HepG2FUS
chr99923566199235756+intron-Distal4.073323.65412HepG2HNRNPK
chr99923441399234465+intron-Distal3.646479.69972HepG2SUGP2
chr99921300999213052+intron-Distal,intron-Proximal3.753913.21433HepG2TAF15
chr99923523999235321+intron-Distal4.419604.23155HepG2MATR3
chr99921709199217201+intron-Distal3.615565.85866HepG2ILF3
chr99923606899236122+intron-Distal4.701486.63948HepG2MATR3
chr99923516499235189+intron-Distal3.161295.35016HepG2SUGP2
chr99923550099235563+intron-Distal3.2076010.76584HepG2SUGP2
chr99924149299241574+intron-Distal4.202994.51080HepG2HNRNPL
chr99923506399235149+intron-Distal3.324244.80727HepG2PTBP1
chr99921304999213130+intron-Distal3.298729.95047HepG2XPO5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HABP4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HABP4 is not available on ENCORE database.

  • 97 RBPs can affect the levels of HABP4.  








The Knockdown/knockout RNA-Seq assay for HABP4 is not available on ENCORE database.





97 RBPs can affect the gene expression of HABP4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HABP4ENSG00000130956.91174.30980595.842600.9787015.5381013.30360HepG2AATF
HABP4ENSG00000130956.9606.06440968.40010-0.676106.312604.95320HepG2ABCF1
HABP4ENSG00000130956.91069.76310814.869400.392605.092404.31670HepG2ACO1
HABP4ENSG00000130956.91641.349001318.613700.315801.779801.34330HepG2AKAP1
HABP4ENSG00000130956.9455.04450818.73150-0.8474014.9076013.32990HepG2AKAP8L
HABP4ENSG00000130956.92192.730101091.046101.0069016.4755014.73790HepG2ASCC1
HABP4ENSG00000130956.9405.71480598.36710-0.560604.244103.52050HepG2BOP1
HABP4ENSG00000130956.91046.38830814.732700.360904.565603.75280HepG2CKAP4
HABP4ENSG00000130956.9695.648501845.93410-1.4079016.7548014.93320HepG2CNOT7
HABP4ENSG00000130956.91672.236501184.512800.497404.556803.76810HepG2CELF1
HABP4ENSG00000130956.9861.925001273.59250-0.563309.952508.68500HepG2DAZAP1
HABP4ENSG00000130956.9402.32660657.22680-0.708006.852605.83360HepG2DDX21
HABP4ENSG00000130956.9235.70690643.28650-1.4485024.1494021.76650HepG2DDX24
HABP4ENSG00000130956.91548.78060623.804401.3119012.1291010.17700HepG2DDX59
HABP4ENSG00000130956.91888.887401085.043900.799708.909707.86640HepG2DDX6
HABP4ENSG00000130956.9503.00670779.61970-0.632208.214307.16760HepG2DKC1
HABP4ENSG00000130956.9877.46390642.168100.450304.832903.92610HepG2DNAJC21
HABP4ENSG00000130956.9434.72900856.53840-0.9784011.595809.88630HepG2EEF2
HABP4ENSG00000130956.9470.10760620.73770-0.401002.806301.71770HepG2EIF3G
HABP4ENSG00000130956.9715.385501152.75660-0.688306.144305.19580HepG2EIF4A3
HABP4ENSG00000130956.91519.163501122.351900.436702.508901.85230HepG2EIF4B
HABP4ENSG00000130956.91830.140401256.519900.5424010.681209.24370HepG2EIF4G1
HABP4ENSG00000130956.91172.082101641.97150-0.486408.603607.64380HepG2ETF1
HABP4ENSG00000130956.9615.37380796.30890-0.371902.791301.95240HepG2EWSR1
HABP4ENSG00000130956.9807.79020588.076200.457903.191101.30850HepG2EXOSC9
HABP4ENSG00000130956.9811.19670626.387100.372902.767201.62320HepG2FASTKD2
HABP4ENSG00000130956.9748.95980977.82670-0.384702.296001.59200HepG2FIP1L1
HABP4ENSG00000130956.91497.37240758.733500.9807017.7472015.85300HepG2FUBP3
HABP4ENSG00000130956.9876.021801163.05400-0.408902.834802.13370HepG2FXR1
HABP4ENSG00000130956.9626.811101078.91840-0.783508.045306.94290HepG2G3BP1
HABP4ENSG00000130956.9315.66630619.03970-0.9716010.495208.81890HepG2GEMIN5
HABP4ENSG00000130956.9524.89950712.86330-0.441602.667701.66940HepG2GNB2L1
HABP4ENSG00000130956.91137.017701708.98990-0.587903.996202.65830HepG2GRSF1
HABP4ENSG00000130956.91095.17010777.991500.493207.380905.88120HepG2HDGF
HABP4ENSG00000130956.9405.41090648.32070-0.677306.157805.24870HepG2HNRNPA1
HABP4ENSG00000130956.91440.416401170.491900.299302.378601.50390HepG2HNRNPA2B1
HABP4ENSG00000130956.9299.39580721.14960-1.2682018.0586016.45070HepG2HNRNPC
HABP4ENSG00000130956.91478.236901092.466900.436203.830303.01970HepG2HNRNPK
HABP4ENSG00000130956.91502.831701160.130200.373306.182605.21070HepG2HNRNPL
HABP4ENSG00000130956.9506.85050674.58940-0.412403.032902.03920HepG2HNRNPM
HABP4ENSG00000130956.9901.77380716.380800.331903.250202.59680HepG2HNRNPU
HABP4ENSG00000130956.9835.893801735.51800-1.0540013.4414010.86440HepG2HSPD1
HABP4ENSG00000130956.9718.19310893.21830-0.314602.270201.61170HepG2IGF2BP1
HABP4ENSG00000130956.91737.792301103.085100.655605.494204.03390HepG2KHSRP
HABP4ENSG00000130956.91009.87010744.918000.438906.377004.86100HepG2KIF1C
HABP4ENSG00000130956.91180.513501734.16740-0.554803.776802.30660HepG2KRR1
HABP4ENSG00000130956.9543.94170733.33840-0.431002.801801.57890HepG2LIN28B
HABP4ENSG00000130956.9661.776601163.45990-0.814009.072507.89780HepG2MAGOH
HABP4ENSG00000130956.9584.21450791.27930-0.437703.614002.69050HepG2MSI2
HABP4ENSG00000130956.91093.12150664.466400.718109.154907.00940HepG2NAA15
HABP4ENSG00000130956.9780.228801197.53970-0.618105.527904.64670HepG2NCBP2
HABP4ENSG00000130956.9727.71270526.924800.465703.236502.42970HepG2NSUN2
HABP4ENSG00000130956.91333.104601066.504900.321802.002501.37990HepG2PABPC4
HABP4ENSG00000130956.9876.310401144.14850-0.384802.833102.22180HepG2PCBP1
HABP4ENSG00000130956.91151.50400843.115200.449602.372401.40740HepG2PCBP2
HABP4ENSG00000130956.9931.62320670.175300.475103.072601.30500HepG2PHF6
HABP4ENSG00000130956.9639.258201205.55690-0.9152014.7051013.47670HepG2PUF60
HABP4ENSG00000130956.9943.633301278.82320-0.438504.719403.85520HepG2PUM2
HABP4ENSG00000130956.92729.893301260.791001.1144036.5095034.66940HepG2QKI
HABP4ENSG00000130956.91365.03140813.546600.746504.575803.68160HepG2RAVER1
HABP4ENSG00000130956.91976.08100969.729601.0269026.0387023.87520HepG2RBM15
HABP4ENSG00000130956.9754.966001372.37480-0.8622018.0707016.98000HepG2RBM22
HABP4ENSG00000130956.91811.800501144.311400.6628010.544509.28650HepG2RBM25
HABP4ENSG00000130956.9380.91500676.57820-0.828809.731408.66520HepG2RPS19
HABP4ENSG00000130956.9501.65640776.60740-0.630505.250204.16830HepG2RPS2
HABP4ENSG00000130956.9849.969101854.58610-1.1256012.0100010.39490HepG2RPS3A
HABP4ENSG00000130956.9692.41600471.358100.554703.412902.55190HepG2RRP9
HABP4ENSG00000130956.9451.84600885.28580-0.970307.878805.40890HepG2RTF1
HABP4ENSG00000130956.9905.12210637.961300.504507.076306.11340HepG2SAFB2
HABP4ENSG00000130956.9431.64210678.98040-0.653505.256003.97160HepG2SERBP1
HABP4ENSG00000130956.9849.57330588.179500.530404.481503.60020HepG2SF3B1
HABP4ENSG00000130956.91504.993101212.038500.312202.450501.88920HepG2SF3B4
HABP4ENSG00000130956.91635.23690654.455801.3210015.1992013.38650HepG2SNRNP70
HABP4ENSG00000130956.9632.475901265.16260-1.0002020.5261019.48910HepG2SRSF1
HABP4ENSG00000130956.9914.482201190.33110-0.380304.501103.73690HepG2SRSF5
HABP4ENSG00000130956.92065.935801029.326101.0050035.2303033.68610HepG2SRSF9
HABP4ENSG00000130956.9956.333501345.76350-0.492808.278407.48370HepG2SSB
HABP4ENSG00000130956.91150.55020760.300300.597603.592202.21120HepG2SUB1
HABP4ENSG00000130956.9873.230101353.71790-0.6325013.1380011.94930HepG2SUCLG1
HABP4ENSG00000130956.9956.87630614.991200.637704.732503.88440HepG2SUPV3L1
HABP4ENSG00000130956.92322.228601137.335201.0298032.7191031.06860HepG2TAF15
HABP4ENSG00000130956.9538.752301698.45860-1.6565014.6340012.44610HepG2TBRG4
HABP4ENSG00000130956.91927.358401044.888800.8832011.287609.63140HepG2TIA1
HABP4ENSG00000130956.9485.35470696.05010-0.520205.007704.37600HepG2TIAL1
HABP4ENSG00000130956.91257.48840702.323500.8402020.3547019.00330HepG2TRIM56
HABP4ENSG00000130956.9160.55560363.27910-1.1780010.784009.29550HepG2UCHL5
HABP4ENSG00000130956.9645.68010774.95270-0.263302.092701.47130HepG2UPF1
HABP4ENSG00000130956.9498.74810748.18540-0.585107.411006.50830HepG2UTP3
HABP4ENSG00000130956.91100.18540800.139600.459302.515701.32050HepG2XRCC5
HABP4ENSG00000130956.9535.29280894.76320-0.741205.384203.93130HepG2XRCC6
HABP4ENSG00000130956.9613.86040788.67010-0.361503.753102.99090HepG2ZC3H8
HABP4ENSG00000130956.969.56040139.58570-1.004803.660602.21020K562APOBEC3C
HABP4ENSG00000130956.9240.64420159.221900.595803.307802.30280K562ATP5C1
HABP4ENSG00000130956.924.6678063.54130-1.365103.479902.03220K562EEF2
HABP4ENSG00000130956.920.3207075.67930-1.896905.909905.06950K562HNRNPC
HABP4ENSG00000130956.948.14530116.71190-1.277504.928303.22940K562HNRNPK
HABP4ENSG00000130956.9230.59660161.042400.517802.264001.52710K562KIF1C
HABP4ENSG00000130956.995.1224048.896600.960002.364201.51040K562KRR1
HABP4ENSG00000130956.998.7368057.407400.782302.325001.57410K562PPIG
HABP4ENSG00000130956.950.39110119.32350-1.243605.947805.00680K562PTBP1
HABP4ENSG00000130956.969.45140114.41120-0.720202.398901.62030K562RBM22
HABP4ENSG00000130956.929.9080067.28530-1.169802.787901.70110K562SAFB
HABP4ENSG00000130956.957.87640116.97800-1.015203.807102.98400K562SRSF1
HABP4ENSG00000130956.926.3635075.75600-1.522804.842203.74960K562SYNCRIP
HABP4ENSG00000130956.921.6803061.19970-1.497103.871502.64810K562UCHL5
HABP4ENSG00000130956.933.6060077.11080-1.198202.981701.33030K562XRCC6
HABP4ENSG00000130956.9201.92930133.596200.595902.775701.91140K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HABP4 is not available on ENCORE database.





1 RBPs can affect the splicing of HABP4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXEHABP4ENSG00000130956.9chr9+99220660992208239922761899227780992124869921291099227991992280600.170000.008210.069741includedHepG2SFPQ

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for HABP4 is not avaliable on ENCORE database.