OTX1

General Information

Gene Name       : OTX1
Gene ID             : ENSG00000115507.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: OTX1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878OTX1ENSG00000115507.90.020.040.03ENCSR000AEF
HepG2OTX1ENSG00000115507.96.844.065.45ENCSR985KAT
K562OTX1ENSG00000115507.92.701.762.23ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for OTX1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • OTX1 RNA is bound by 8 proteins.  







eCLIP assay for OTX1 is not avaliable on ENCORE database.





8 proteins are bound to OTX1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr26328400763284076+3'-UTR3.234973.71253K562LIN28B
chr26328317563283250+3'-UTR,CDS3.965543.06143HepG2IGF2BP1
chr26328359863283665+3'-UTR4.086343.48187K562RBM15
chr26328400563284119+3'-UTR4.721434.60263HepG2LIN28B
chr26328411963284193+3'-UTR6.8705713.67942K562PUM2
chr26327840263278477+5'-UTR,intron-Proximal3.961517.57443HepG2BUD13
chr26327998863280053+5'-UTR,intron-Proximal4.353013.93614HepG2AQR
chr26327851963278582+intron-Distal,intron-Proximal5.477146.82887HepG2EFTUD2
chr26327730863277383+intron-Proximal3.116313.04847HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for OTX1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for OTX1 is not available on ENCORE database.

  • 61 RBPs can affect the levels of OTX1.  








The Knockdown/knockout RNA-Seq assay for OTX1 is not available on ENCORE database.





61 RBPs can affect the gene expression of OTX1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
OTX1ENSG00000115507.5203.14600302.08200-0.572403.919103.21920HepG2ACO1
OTX1ENSG00000115507.5258.88480183.011200.500302.233701.33790HepG2ADAR
OTX1ENSG00000115507.5458.30690231.434300.985607.037506.23180HepG2AKAP1
OTX1ENSG00000115507.5450.46860345.829400.381302.553701.88990HepG2AUH
OTX1ENSG00000115507.5221.96660671.12070-1.5962025.7739024.25410HepG2BOP1
OTX1ENSG00000115507.5193.76420354.72910-0.872407.041405.88390HepG2CALR
OTX1ENSG00000115507.5408.10220302.058200.434003.192102.48720HepG2CKAP4
OTX1ENSG00000115507.5610.55370212.314501.5238014.0590012.38720HepG2CNOT7
OTX1ENSG00000115507.5437.83710616.12080-0.492801.971901.38030HepG2CPSF6
OTX1ENSG00000115507.5254.15510184.267700.463802.293401.64750HepG2DNAJC21
OTX1ENSG00000115507.5265.21770182.676500.537803.070502.38950HepG2DNAJC2
OTX1ENSG00000115507.5259.38270183.061300.502701.927901.42280HepG2EIF2S1
OTX1ENSG00000115507.5408.92880295.225200.469902.823901.98100HepG2EWSR1
OTX1ENSG00000115507.5264.25720155.179000.767904.257102.12330HepG2EXOSC9
OTX1ENSG00000115507.5358.66350210.633400.767805.335103.67750HepG2FAM120A
OTX1ENSG00000115507.5448.96430642.75610-0.517702.820702.04240HepG2FIP1L1
OTX1ENSG00000115507.5277.93940196.195200.502402.228501.51600HepG2FUBP3
OTX1ENSG00000115507.5299.10400204.154900.550902.536701.87310HepG2FXR1
OTX1ENSG00000115507.5295.48350189.353300.641903.213102.49930HepG2G3BP1
OTX1ENSG00000115507.5362.46600201.062400.850105.809204.50960HepG2G3BP2
OTX1ENSG00000115507.5355.76560209.808500.761805.234303.99820HepG2GEMIN5
OTX1ENSG00000115507.5323.85960196.551100.720403.482302.23010HepG2GRSF1
OTX1ENSG00000115507.5306.03530206.939700.564402.761502.06880HepG2HNRNPC
OTX1ENSG00000115507.5583.39650331.651500.8147010.750009.45720HepG2HNRNPF
OTX1ENSG00000115507.5394.49990191.808101.040308.498307.32660HepG2HNRNPK
OTX1ENSG00000115507.5376.54320236.069600.673506.068405.10430HepG2HNRNPL
OTX1ENSG00000115507.5390.17950205.570700.9244010.110509.01200HepG2HNRNPU
OTX1ENSG00000115507.51170.55730480.481001.2845015.3187012.56980HepG2KRR1
OTX1ENSG00000115507.5235.85110138.690300.765903.722902.40650HepG2LARP7
OTX1ENSG00000115507.5249.83150139.087700.844904.321102.21840HepG2LSM11
OTX1ENSG00000115507.5340.97070520.20920-0.609404.596403.57470HepG2MSI2
OTX1ENSG00000115507.5431.34620210.189801.037108.345207.27410HepG2NCBP2
OTX1ENSG00000115507.5307.85490211.053600.544502.239401.30300HepG2PCBP2
OTX1ENSG00000115507.5316.80730194.875500.701004.740103.14580HepG2PKM
OTX1ENSG00000115507.5402.67140260.204800.629904.538303.68980HepG2PUM2
OTX1ENSG00000115507.5303.30210167.245300.858704.613803.31090HepG2RBM27
OTX1ENSG00000115507.5377.61780200.559600.912808.572707.57690HepG2RECQL
OTX1ENSG00000115507.5219.47060357.27980-0.703004.739403.87740HepG2RPLP0
OTX1ENSG00000115507.5491.03430200.087101.2951010.816009.07810HepG2RPS10
OTX1ENSG00000115507.5234.03120154.231800.601502.256101.52850HepG2RPS2
OTX1ENSG00000115507.5261.18460183.062800.512602.880302.22590HepG2SAFB2
OTX1ENSG00000115507.51123.61740708.960700.664304.854203.94590HepG2SF3A3
OTX1ENSG00000115507.5349.51850201.450200.794806.298305.46760HepG2SF3B4
OTX1ENSG00000115507.5550.58810325.838900.756709.258008.11450HepG2SRSF7
OTX1ENSG00000115507.5327.31680434.02360-0.407102.358201.48490HepG2SUPT6H
OTX1ENSG00000115507.5991.96600649.669200.610506.010904.99920HepG2TARDBP
OTX1ENSG00000115507.51376.45320549.838601.3238024.3123022.38420HepG2U2AF1
OTX1ENSG00000115507.5921.49650382.558401.268204.469903.20260HepG2U2AF2
OTX1ENSG00000115507.5433.84690628.74280-0.535304.954904.06270HepG2UPF1
OTX1ENSG00000115507.5845.68170646.237300.388003.841102.62540HepG2UTP18
OTX1ENSG00000115507.5469.55390607.02190-0.370502.889702.28130HepG2UTP3
OTX1ENSG00000115507.5207.86930119.773500.795303.260802.63350K562AQR
OTX1ENSG00000115507.5174.8452094.964200.880504.432703.03990K562CCAR1
OTX1ENSG00000115507.5159.60440228.88650-0.520102.665402.02370K562DDX47
OTX1ENSG00000115507.5196.50860118.915600.724603.353001.94110K562EXOSC5
OTX1ENSG00000115507.5162.2518093.979200.787703.149501.49070K562LSM11
OTX1ENSG00000115507.5178.72410103.721900.784903.005501.50100K562NUSAP1
OTX1ENSG00000115507.5215.5321094.397101.191006.864405.32600K562PSIP1
OTX1ENSG00000115507.5156.5050086.191400.860503.212202.13950K562RCC2
OTX1ENSG00000115507.5152.9965081.700300.905003.626102.40390K562SRFBP1
OTX1ENSG00000115507.5166.0386090.786100.870902.134601.32370K562TIAL1
OTX1ENSG00000115507.5150.7706096.522500.643302.152301.33420K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for OTX1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of OTX1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for OTX1 is not avaliable on ENCORE database.