HOXD1

General Information

Gene Name       : HOXD1
Gene ID             : ENSG00000128645.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HOXD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HOXD1ENSG00000128645.140.000.000.00ENCSR000AEF
HepG2HOXD1ENSG00000128645.142.263.142.70ENCSR985KAT
K562HOXD1ENSG00000128645.140.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HOXD1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on HOXD1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for HOXD1 is not avaliable on ENCORE database.






NO known proteins are bound to HOXD1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for HOXD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HOXD1 is not available on ENCORE database.

  • 178 RBPs can affect the levels of HOXD1.  








The Knockdown/knockout RNA-Seq assay for HOXD1 is not available on ENCORE database.





178 RBPs can affect the gene expression of HOXD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HOXD1ENSG00000128645.11119.05480209.13610-0.812804.100502.82030HepG2AATF
HOXD1ENSG00000128645.11132.31060951.71320-2.8466062.4917059.56640HepG2ABCF1
HOXD1ENSG00000128645.11101.16130383.52160-1.9226023.9627021.61230HepG2ADAR
HOXD1ENSG00000128645.1151.11920232.16680-2.1832016.0626014.89050HepG2AKAP1
HOXD1ENSG00000128645.11110.13750282.23020-1.3576010.070108.22630HepG2AKAP8
HOXD1ENSG00000128645.11266.98600517.92630-0.9560013.1869011.67990HepG2AKAP8L
HOXD1ENSG00000128645.1165.05740166.65800-1.357105.066702.69900HepG2APOBEC3C
HOXD1ENSG00000128645.1141.24190192.10280-2.2197015.9662014.24550HepG2ASCC1
HOXD1ENSG00000128645.11303.55550859.20660-1.5010021.7829018.45000HepG2ATP5C1
HOXD1ENSG00000128645.11222.79400839.16710-1.9132051.2054048.92210HepG2AUH
HOXD1ENSG00000128645.1172.10690237.82970-1.721708.636507.16170HepG2BCLAF1
HOXD1ENSG00000128645.1113.98480216.54280-3.952706.282205.42230HepG2BOP1
HOXD1ENSG00000128645.11216.28640713.25400-1.7215032.2691028.86070HepG2BUD13
HOXD1ENSG00000128645.11100.98680452.76880-2.1646033.5222031.46000HepG2CALR
HOXD1ENSG00000128645.11166.56960565.81440-1.7642020.7754018.32440HepG2CCAR1
HOXD1ENSG00000128645.11423.10770668.15140-0.659206.100503.04230HepG2CEBPZ
HOXD1ENSG00000128645.1125.83370182.50950-2.8206020.7917018.91070HepG2CIRBP
HOXD1ENSG00000128645.11147.65680515.40230-1.8035038.6102036.79030HepG2CKAP4
HOXD1ENSG00000128645.11527.24820178.487001.5626013.7240012.07570HepG2CNOT7
HOXD1ENSG00000128645.1176.61360198.77500-1.375502.004301.40850HepG2CPSF6
HOXD1ENSG00000128645.11345.79810784.02080-1.1810017.0582014.61440HepG2CPSF7
HOXD1ENSG00000128645.11116.21290393.29440-1.7588025.1531022.46570HepG2YBX3
HOXD1ENSG00000128645.1124.95100169.02680-2.7601012.9433010.93580HepG2CSTF2
HOXD1ENSG00000128645.11156.10890636.29270-2.0271046.6255044.64960HepG2CELF1
HOXD1ENSG00000128645.1199.82060476.75000-2.2558052.9404050.51030HepG2DDX19B
HOXD1ENSG00000128645.11186.96310393.84700-1.0749011.495309.39510HepG2DDX1
HOXD1ENSG00000128645.1119.49030230.97380-3.5669027.8328026.01670HepG2DDX21
HOXD1ENSG00000128645.1140.41540225.83230-2.4823022.8494020.51360HepG2DDX24
HOXD1ENSG00000128645.1181.79690251.80980-1.622207.340105.35040HepG2DDX27
HOXD1ENSG00000128645.11127.88680203.82530-0.672502.787201.39170HepG2DDX28
HOXD1ENSG00000128645.1123.14270222.40740-3.2646029.9159028.10280HepG2DDX3X
HOXD1ENSG00000128645.11166.94450247.44900-0.567802.637301.36850HepG2DDX47
HOXD1ENSG00000128645.11136.11240356.65700-1.3897015.3022012.62550HepG2DDX52
HOXD1ENSG00000128645.1183.02860269.20220-1.697008.230206.97640HepG2DDX55
HOXD1ENSG00000128645.1126.30220225.73120-3.101404.771003.49830HepG2DDX59
HOXD1ENSG00000128645.11216.46260669.12490-1.6282018.5976016.32980HepG2DDX5
HOXD1ENSG00000128645.11525.98480191.030901.4611015.8389014.52230HepG2DDX6
HOXD1ENSG00000128645.1184.70770372.47920-2.1366028.7657026.28290HepG2DHX30
HOXD1ENSG00000128645.1138.15450493.16720-3.6921082.4774080.19630HepG2DKC1
HOXD1ENSG00000128645.1195.90380386.19110-2.0097028.4944026.51180HepG2DNAJC21
HOXD1ENSG00000128645.11206.79440382.77300-0.8883010.010808.86250HepG2DNAJC2
HOXD1ENSG00000128645.1143.68850425.58140-3.2841047.3110044.64050HepG2EEF2
HOXD1ENSG00000128645.11114.70410354.82900-1.6292017.4354014.81360HepG2EFTUD2
HOXD1ENSG00000128645.1197.59800212.52990-1.122706.189804.54390HepG2AGO1
HOXD1ENSG00000128645.1149.24580183.66420-1.8990012.0026010.82220HepG2EIF2S1
HOXD1ENSG00000128645.11224.61870722.15250-1.6848024.3518021.53190HepG2EIF2S2
HOXD1ENSG00000128645.11150.12040345.50340-1.202609.919108.31930HepG2EIF3D
HOXD1ENSG00000128645.1141.99090217.98850-2.3761020.0722017.74050HepG2EIF3G
HOXD1ENSG00000128645.1189.41310202.98090-1.182806.578505.59160HepG2EIF4A3
HOXD1ENSG00000128645.1174.44670197.61050-1.408406.954005.89380HepG2EIF4B
HOXD1ENSG00000128645.1152.12400674.97890-3.69480105.51200102.24150HepG2EIF4G1
HOXD1ENSG00000128645.11344.43180646.58930-0.908609.847108.35700HepG2EIF4G2
HOXD1ENSG00000128645.1196.72200824.59280-3.0918071.3713067.59880HepG2ESF1
HOXD1ENSG00000128645.1158.63590963.54690-4.03850114.40560111.62290HepG2ETF1
HOXD1ENSG00000128645.11121.08600503.74440-2.0567035.9516033.36150HepG2EWSR1
HOXD1ENSG00000128645.1196.11130206.53780-1.103606.449303.88000HepG2EXOSC9
HOXD1ENSG00000128645.11124.02470308.74240-1.3158013.2238010.72550HepG2FAM120A
HOXD1ENSG00000128645.1176.41660155.77900-1.027503.853201.44440HepG2FASTKD1
HOXD1ENSG00000128645.11119.16280220.00830-0.884605.162803.67300HepG2FASTKD2
HOXD1ENSG00000128645.11178.97980961.05600-2.4248044.6191042.28530HepG2FIP1L1
HOXD1ENSG00000128645.1161.18290224.03550-1.872509.397807.30800HepG2FKBP4
HOXD1ENSG00000128645.11404.27140640.08500-0.662904.912602.71570HepG2FMR1
HOXD1ENSG00000128645.1125.98030199.16390-2.938504.248702.99350HepG2FTO
HOXD1ENSG00000128645.11653.49880150.445002.1188040.7759038.04870HepG2FUBP3
HOXD1ENSG00000128645.1156.40800290.42550-2.3642022.3020019.69590HepG2FUS
HOXD1ENSG00000128645.11328.39090204.767800.681303.752302.95600HepG2FXR1
HOXD1ENSG00000128645.1152.14030189.96870-1.8653012.7127011.34040HepG2G3BP1
HOXD1ENSG00000128645.1170.82320201.65450-1.509609.490307.83880HepG2G3BP2
HOXD1ENSG00000128645.1141.49840307.63390-2.8901034.9169032.34300HepG2GEMIN5
HOXD1ENSG00000128645.1162.28840283.19050-2.184708.702606.88840HepG2GNB2L1
HOXD1ENSG00000128645.114.10400225.26340-5.778409.324208.19340HepG2GPKOW
HOXD1ENSG00000128645.11161.33700273.74760-0.762803.401001.64940HepG2GTF2F1
HOXD1ENSG00000128645.11203.93240492.14850-1.2710021.5255019.25000HepG2HDGF
HOXD1ENSG00000128645.11106.39240278.48980-1.388208.042305.61350HepG2HLTF
HOXD1ENSG00000128645.1146.31980389.89080-3.0734044.4031042.44750HepG2HNRNPA1
HOXD1ENSG00000128645.11312.48270628.78060-1.0088015.4438013.59950HepG2HNRNPA2B1
HOXD1ENSG00000128645.11288.70300147.242900.971305.999603.88840HepG2HNRNPAB
HOXD1ENSG00000128645.1161.10140433.67880-2.8273042.7056040.38100HepG2HNRNPC
HOXD1ENSG00000128645.11313.40120421.93400-0.429002.290901.63430HepG2HNRNPF
HOXD1ENSG00000128645.11700.38390192.321901.8645031.6564029.56470HepG2HNRNPK
HOXD1ENSG00000128645.111187.56340623.249300.9300025.5001023.67450HepG2HNRNPL
HOXD1ENSG00000128645.1134.76350214.97880-2.628504.127703.37450HepG2HNRNPLL
HOXD1ENSG00000128645.11320.19280663.23760-1.0506012.4721010.69910HepG2HNRNPM
HOXD1ENSG00000128645.1119.51350430.81180-4.4645095.2231092.37480HepG2HNRNPU
HOXD1ENSG00000128645.11167.01110307.26490-0.879505.143603.48470HepG2HSPD1
HOXD1ENSG00000128645.11215.67710415.48860-0.945908.899007.67120HepG2IGF2BP1
HOXD1ENSG00000128645.1125.34750193.10490-2.9295023.3523021.62760HepG2IGF2BP2
HOXD1ENSG00000128645.11105.67070440.06040-2.0581043.4332041.04200HepG2ILF2
HOXD1ENSG00000128645.1180.35290173.97620-1.114504.460302.75990HepG2ILF3
HOXD1ENSG00000128645.11112.03820194.21950-0.793703.055801.99410HepG2KHSRP
HOXD1ENSG00000128645.11689.62790471.227800.549303.850302.65000HepG2KIF1C
HOXD1ENSG00000128645.11102.34170307.04160-1.5850013.2007010.62450HepG2KRR1
HOXD1ENSG00000128645.11176.53680597.67700-1.7594022.2275019.87180HepG2LARP4
HOXD1ENSG00000128645.11134.47180278.35700-1.049603.411501.51330HepG2LSM11
HOXD1ENSG00000128645.1184.38900204.83910-1.279407.369106.31360HepG2MAGOH
HOXD1ENSG00000128645.1197.85160361.61900-1.8858013.3126011.16440HepG2METAP2
HOXD1ENSG00000128645.1145.07400778.05450-4.1095089.2027086.13180HepG2MSI2
HOXD1ENSG00000128645.1144.26830219.38920-2.309103.311502.24390HepG2MTPAP
HOXD1ENSG00000128645.11359.18740653.27820-0.863007.333105.39260HepG2NAA15
HOXD1ENSG00000128645.11127.50660210.84710-0.725603.057702.39380HepG2NCBP2
HOXD1ENSG00000128645.11117.45790250.78010-1.094303.907702.20290HepG2NIP7
HOXD1ENSG00000128645.1177.72980291.18300-1.9054016.9457013.74840HepG2NKRF
HOXD1ENSG00000128645.1142.94810678.43940-3.98160109.85380106.24310HepG2NOL12
HOXD1ENSG00000128645.11141.24940247.34310-0.808303.327102.11930HepG2NONO
HOXD1ENSG00000128645.1146.11770190.66590-2.047703.001402.22300HepG2NSUN2
HOXD1ENSG00000128645.11113.24720273.79230-1.273603.590601.50600HepG2NUFIP2
HOXD1ENSG00000128645.11447.88120281.731700.668704.824202.11750HepG2NUSAP1
HOXD1ENSG00000128645.11118.88530258.32530-1.119605.529603.33900HepG2PA2G4
HOXD1ENSG00000128645.1133.93720163.08610-2.2647011.643609.79240HepG2PABPC1
HOXD1ENSG00000128645.1160.96900187.79220-1.6230010.379509.00400HepG2PABPC4
HOXD1ENSG00000128645.11128.73800426.43320-1.7279028.0095025.87440HepG2PARN
HOXD1ENSG00000128645.11426.85080195.018601.1300014.3604013.15400HepG2PCBP1
HOXD1ENSG00000128645.11331.80460490.22270-0.563103.931101.88040HepG2PES1
HOXD1ENSG00000128645.11113.44800285.71800-1.332609.368307.25610HepG2PKM
HOXD1ENSG00000128645.11300.39900160.027500.908504.691302.74540HepG2PNPT1
HOXD1ENSG00000128645.11275.65140384.25020-0.479203.246602.45440HepG2PPIL4
HOXD1ENSG00000128645.1171.74940634.42910-3.1444028.4572026.49120HepG2PRPF4
HOXD1ENSG00000128645.1172.62160288.99870-1.9926016.3575013.82460HepG2PRPF6
HOXD1ENSG00000128645.1129.38270207.51250-2.8202016.5565014.81050HepG2PRPF8
HOXD1ENSG00000128645.11111.65550316.72810-1.504205.083802.68280HepG2PSIP1
HOXD1ENSG00000128645.1169.70020647.62480-3.2159073.2050070.72830HepG2PUF60
HOXD1ENSG00000128645.111734.66280687.476401.3352033.8156032.21130HepG2PUM1
HOXD1ENSG00000128645.11105.68520686.97790-2.7005065.7698062.95290HepG2PUM2
HOXD1ENSG00000128645.11107.76010525.03440-2.2846054.1925052.18210HepG2PUS1
HOXD1ENSG00000128645.11110.71110214.91790-0.957005.599604.75700HepG2QKI
HOXD1ENSG00000128645.11282.97280121.541801.219105.159702.70410HepG2RBM14
HOXD1ENSG00000128645.11129.23550676.11350-2.3873012.4165010.80580HepG2RBM15
HOXD1ENSG00000128645.1184.87460275.61250-1.699205.424802.81030HepG2RBM17
HOXD1ENSG00000128645.1130.43540805.33220-4.72580125.14460122.73990HepG2RBM22
HOXD1ENSG00000128645.11154.10920334.37900-1.117503.774102.60420HepG2RBM27
HOXD1ENSG00000128645.1167.72800172.33530-1.347406.309104.05050HepG2RBM47
HOXD1ENSG00000128645.1137.41190220.84220-2.5614024.6032023.30950HepG2NELFE
HOXD1ENSG00000128645.11104.18870205.67880-0.981205.881605.02820HepG2RECQL
HOXD1ENSG00000128645.1145.50170454.46620-3.3202056.6396054.53220HepG2RPLP0
HOXD1ENSG00000128645.11165.87510260.63590-0.651902.673901.74410HepG2RPS10
HOXD1ENSG00000128645.1142.54650336.16580-2.9821040.1423038.29420HepG2RPS19
HOXD1ENSG00000128645.1157.67410308.42430-2.4189010.542509.06700HepG2RPS2
HOXD1ENSG00000128645.1163.12340179.07160-1.504307.796106.47140HepG2RPS3A
HOXD1ENSG00000128645.11104.13430314.79310-1.596006.141704.53540HepG2RPS5
HOXD1ENSG00000128645.1165.99230205.25760-1.637109.232307.91470HepG2RRP9
HOXD1ENSG00000128645.1164.14490288.67830-2.1701017.8298014.41490HepG2RTF1
HOXD1ENSG00000128645.11561.86300383.658500.550305.807904.92850HepG2SAFB2
HOXD1ENSG00000128645.1150.56440337.43310-2.7384036.2953033.38830HepG2SERBP1
HOXD1ENSG00000128645.11336.63000620.95910-0.8833013.6750012.31870HepG2SLBP
HOXD1ENSG00000128645.11680.66300258.876901.394608.579705.99720HepG2SLTM
HOXD1ENSG00000128645.11558.11230447.413200.318802.406801.80100HepG2SMN1
HOXD1ENSG00000128645.1124.09610236.73470-3.296405.329004.23360HepG2SNRNP70
HOXD1ENSG00000128645.1150.74210909.56700-4.16390122.81050120.75040HepG2SRFBP1
HOXD1ENSG00000128645.11122.36060256.34870-1.067004.689102.67200HepG2SRP68
HOXD1ENSG00000128645.1168.79530215.64620-1.6483013.0327012.17060HepG2SRSF1
HOXD1ENSG00000128645.11320.09380639.42800-0.9983015.8011014.47720HepG2SRSF5
HOXD1ENSG00000128645.11226.70010414.52240-0.870708.804807.68110HepG2SRSF7
HOXD1ENSG00000128645.1110.16210789.67390-6.28000158.65670156.44780HepG2SSB
HOXD1ENSG00000128645.11150.61670306.18280-1.023507.131505.20410HepG2SSRP1
HOXD1ENSG00000128645.1174.00380642.14000-3.1172050.1602046.69840HepG2STAU1
HOXD1ENSG00000128645.11350.33620155.719101.169709.324907.21180HepG2STIP1
HOXD1ENSG00000128645.1195.11080727.21190-2.9347093.3326090.76580HepG2SUCLG1
HOXD1ENSG00000128645.1170.58750309.94840-2.1345020.3655016.82510HepG2SUGP2
HOXD1ENSG00000128645.11256.61330649.15570-1.3390020.5078018.20750HepG2SUPT6H
HOXD1ENSG00000128645.119.41930267.94160-4.8302025.9327024.25080HepG2SUPV3L1
HOXD1ENSG00000128645.1154.11280193.82360-1.8407014.5406013.40430HepG2TAF15
HOXD1ENSG00000128645.1166.76920209.70610-1.651102.447801.76020HepG2TARDBP
HOXD1ENSG00000128645.1165.66500300.73940-2.1953014.7845012.58510HepG2TBRG4
HOXD1ENSG00000128645.1136.32390179.56440-2.3055011.8739010.10220HepG2TFIP11
HOXD1ENSG00000128645.1135.72870418.62390-3.5505066.3291064.49650HepG2TIAL1
HOXD1ENSG00000128645.1194.45540422.35560-2.1608040.5633038.72480HepG2TRIM56
HOXD1ENSG00000128645.11119.75440274.55960-1.197008.299405.82860HepG2TROVE2
HOXD1ENSG00000128645.11190.08270632.69230-1.7349030.5018027.56770HepG2TUFM
HOXD1ENSG00000128645.11257.18930822.25680-1.6768028.5211026.41920HepG2U2AF1
HOXD1ENSG00000128645.1118.23850276.81660-3.9239019.4081016.65890HepG2U2AF2
HOXD1ENSG00000128645.1149.09190669.68850-3.7699064.8473061.54800HepG2UBE2L3
HOXD1ENSG00000128645.11150.51800446.71470-1.569404.101903.27740HepG2UPF1
HOXD1ENSG00000128645.1177.51050245.23380-1.661708.406106.61080HepG2UPF2
HOXD1ENSG00000128645.11127.49200459.12000-1.848505.958004.47250HepG2UTP18
HOXD1ENSG00000128645.1173.66350431.27730-2.549608.448107.49340HepG2UTP3
HOXD1ENSG00000128645.11108.54890291.76000-1.4264010.484608.56810HepG2XRCC6
HOXD1ENSG00000128645.1148.24530263.76050-2.4508012.3733010.86520HepG2XRN2
HOXD1ENSG00000128645.1192.18460626.15310-2.7639024.2795022.64910HepG2ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HOXD1 is not available on ENCORE database.





2 RBPs can affect the splicing of HOXD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEHOXD1ENSG00000128645.11chr2+177054276177054409177053306177054181177054535177055688-0.246000.000000.00000excludedHepG2U2AF1
SEHOXD1ENSG00000128645.11chr2+177054276177054409177053306177054181177054535177055688-0.320000.000020.02369excludedHepG2TRA2A

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for HOXD1 is not avaliable on ENCORE database.