RC3H2

General Information

Gene Name       : RC3H2
Gene ID             : ENSG00000056586.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RC3H2)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RC3H2ENSG00000056586.159.2310.109.66ENCSR000AEF
HepG2RC3H2ENSG00000056586.1512.9316.7714.85ENCSR985KAT
K562RC3H2ENSG00000056586.1511.1610.5710.87ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
RC3H2ENCAB118FAAA305-149A1Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
RC3H2K562CRISPRBGKcLV30-27,BGKcLV30-28BGKcLV30-1,BGKcLV30-2too many bands,NotSatisfiedENCODE4
RC3H2HepG2CRISPRBGHcLV32-25,BGHcLV32-26BGHcLV32-1,BGHcLV32-2NO CLEAR BAND,NotSatisfiedENCODE4
RC3H2Ribo-STAMP-293TshRNARC3H2-BGRSLV04-45,RC3H2-BGRSLV04-46NT-BGRSLV04-1,NT-BGRSLV04-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
RC3H2Product_ID: A305-149A
Lot_ID: 1
Source: Bethyl Labs
Target Name: RC3H2-human
Bethyl_A305-149A_1_RC3H2.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the RC3H2 specific antibody, A305-149A. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the RC3H2-specific antibody, A305-149A. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.








RNA Targets

  • eCLIP assay for RC3H2 is not avaliable on ENCORE database.



Proteins bound to RNA

  • RC3H2 RNA is bound by 32 proteins.  







eCLIP assay for RC3H2 is not avaliable on ENCORE database.





32 proteins are bound to RC3H2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9125613418125613510-3'-UTR,CDS,intron-Distal,intron-Proximal3.027996.06438HepG2BCLAF1
chr9125627691125627775-3'-UTR,CDS,intron-Distal,intron-Proximal3.546183.01531K562YBX3
chr9125620949125620997-3'-UTR,CDS,intron-Distal4.194755.35703HepG2BCLAF1
chr9125616236125616334-3'-UTR,CDS,intron-Distal3.426083.36945K562ZNF622
chr9125610788125610870-3'-UTR,intron-Distal5.1606314.92977HepG2FUBP3
chr9125620962125621110-3'-UTR,CDS,intron-Distal3.491314.93175HepG2GRWD1
chr9125636370125636426-3'-UTR,intron-Distal4.083304.03269HepG2PTBP1
chr9125617480125617648-3'-UTR,CDS,intron-Distal3.634586.02304HepG2GRWD1
chr9125606924125606992-3'-UTR,intron-Distal3.734973.02060K562LIN28B
chr9125621148125621228-3'-UTR,CDS,intron-Distal3.876433.39506K562IGF2BP2
chr9125636566125636657-3'-UTR,intron-Distal4.152054.07628HepG2PTBP1
chr9125611293125611346-3'-UTR,intron-Distal3.127283.37563HepG2FUBP3
chr9125620313125620375-3'-UTR,CDS,intron-Distal,intron-Proximal4.957786.37937HepG2BCLAF1
chr9125617640125617676-3'-UTR,CDS,intron-Distal3.406383.68471HepG2BCLAF1
chr9125618065125618123-3'-UTR,CDS,intron-Distal,intron-Proximal3.980334.51739HepG2BCLAF1
chr9125607256125607414-3'-UTR,intron-Distal4.8542512.61869K562PUM2
chr9125617577125617640-3'-UTR,CDS,intron-Distal3.716857.23562HepG2BCLAF1
chr9125609261125609335-3'-UTR,intron-Distal3.160883.06005HepG2QKI
chr9125667428125667528-5'-UTR,intron-Distal,intron-Proximal4.8267410.34792HepG2DDX3X
chr9125667528125667594-5'-UTR,intron-Distal,intron-Proximal4.634714.66990HepG2DDX3X
chr9125667504125667607-5'-UTR,intron-Distal,intron-Proximal5.3142010.90592HepG2NCBP2
chr9125645548125645641-CDS,intron-Distal3.448824.74886HepG2BCLAF1
chr9125639748125639824-CDS,intron-Distal,intron-Proximal4.005575.38549K562PUM2
chr9125652682125652764-CDS,intron-Distal3.161294.11795K562YBX3
chr9125652597125652711-CDS,intron-Distal3.741305.97823HepG2BCLAF1
chr9125652758125652846-CDS,intron-Distal,intron-Proximal3.597543.19080K562U2AF2
chr9125639769125639828-CDS,intron-Distal3.704273.04123K562LIN28B
chr9125645410125645518-CDS,intron-Distal,intron-Proximal6.048069.06713HepG2PRPF8
chr9125645400125645491-CDS,intron-Distal,intron-Proximal5.589128.72920K562PRPF8
chr9125639751125639829-CDS,intron-Distal4.196114.60263HepG2LIN28B
chr9125655155125655239-CDS,intron-Distal,intron-Proximal4.391225.05356HepG2PRPF8
chr9125639755125639811-CDS,intron-Distal3.602883.94979HepG2BCLAF1
chr9125655087125655190-CDS,intron-Distal,intron-Proximal3.574477.19702K562KHSRP
chr9125642582125642585-intron-Distal6.2651311.81503HepG2NIP7
chr9125645821125645898-intron-Distal3.816623.02234K562KHSRP
chr9125645731125645821-intron-Distal,intron-Proximal3.823163.24603K562KHSRP
chr9125638258125638393-intron-Distal4.124593.90241K562MATR3
chr9125642501125642509-intron-Distal,intron-Proximal6.0954361.90665K562SMNDC1
chr9125642542125642588-intron-Distal7.94424127.81257HepG2NOLC1
chr9125642501125642539-intron-Distal,intron-Proximal5.7852315.45088K562AATF
chr9125638282125638385-intron-Distal4.193545.16181K562PTBP1
chr9125654076125654140-intron-Distal3.816623.02234K562KHSRP
chr9125642542125642582-intron-Distal5.7203616.44214HepG2NIP7
chr9125642500125642542-intron-Distal,intron-Proximal4.9869018.09984K562PTBP1
chr9125667318125667389-intron-Distal4.964545.17615K562AQR
chr9125642539125642586-intron-Distal6.3102915.33952K562AATF
chr9125642501125642573-intron-Distal,intron-Proximal3.2977414.70988K562WDR43
chr9125642502125642542-intron-Distal,intron-Proximal4.104174.31902HepG2NIP7
chr9125642505125642578-intron-Distal3.203853.96748K562TBRG4
chr9125639044125639126-intron-Distal4.595255.31925HepG2QKI
chr9125637789125637919-intron-Distal3.775063.37809K562HNRNPL
chr9125642540125642586-intron-Distal4.8616811.17285K562SF3B4
chr9125638256125638390-intron-Distal4.5087312.63954HepG2PTBP1
chr9125642499125642540-intron-Distal,intron-Proximal3.0308713.84802K562DDX21
chr9125642501125642584-intron-Distal,intron-Proximal3.669235.41741K562XRCC6
chr9125651855125651936-intron-Distal4.271575.19823K562KHSRP
chr9125643681125643741-intron-Distal3.909723.80060HepG2HNRNPC
chr9125642501125642542-intron-Distal,intron-Proximal5.4040263.86925HepG2DKC1
chr9125642509125642540-intron-Distal5.4154665.70180K562SMNDC1
chr9125637846125637926-intron-Distal3.852933.50031HepG2HNRNPL
chr9125653964125654076-intron-Distal3.797809.31101K562KHSRP
chr9125642540125642570-intron-Distal4.2354220.11646K562SMNDC1
chr9125642502125642592-intron-Distal,intron-Proximal4.409008.88745K562PHF6
chr9125647623125647744-intron-Distal4.590076.58261K562KHSRP
chr9125655036125655133-intron-Distal,intron-Proximal4.002263.73609HepG2KHSRP
chr9125637865125637948-intron-Distal5.6740213.44723HepG2QKI
chr9125642501125642508-intron-Distal,intron-Proximal3.8426319.37860K562SF3B4
chr9125642542125642575-intron-Distal5.9437950.71215HepG2DKC1
chr9125642575125642587-intron-Distal5.0334915.22525HepG2DKC1
chr9125667280125667366-intron-Distal3.276263.99201HepG2RBM22
chr9125637932125638004-intron-Distal4.161363.41738HepG2PTBP1
chr9125654244125654369-intron-Distal3.297595.78064K562KHSRP
chr9125655075125655132-intron-Distal,intron-Proximal4.127143.85435K562PRPF8
chr9125655024125655087-intron-Distal4.254884.10688K562KHSRP
chr9125642501125642542-intron-Distal,intron-Proximal7.69048400.00000HepG2NOLC1
chr9125642500125642572-intron-Distal,intron-Proximal5.128489.43505HepG2LARP7
chr9125642542125642584-intron-Distal4.346179.23478K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RC3H2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RC3H2 is not available on ENCORE database.

  • 80 RBPs can affect the levels of RC3H2.  








The Knockdown/knockout RNA-Seq assay for RC3H2 is not available on ENCORE database.





80 RBPs can affect the gene expression of RC3H2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RC3H2ENSG00000056586.111570.745802091.47080-0.413102.867002.32580HepG2AKAP1
RC3H2ENSG00000056586.112535.076102044.456700.310204.654603.80450HepG2AUH
RC3H2ENSG00000056586.11659.965801234.80520-0.903808.812907.09750HepG2BCCIP
RC3H2ENSG00000056586.111351.220201073.070400.332402.473101.62350HepG2BCLAF1
RC3H2ENSG00000056586.111426.595501940.77770-0.444102.896701.89880HepG2CCAR1
RC3H2ENSG00000056586.111198.679401566.32660-0.385906.604505.65780HepG2CKAP4
RC3H2ENSG00000056586.111737.390101120.476600.632707.591706.49880HepG2CPSF6
RC3H2ENSG00000056586.11838.965601448.93430-0.7883022.0287020.21300HepG2DDX19B
RC3H2ENSG00000056586.11850.912501170.46250-0.460005.571903.98130HepG2DDX1
RC3H2ENSG00000056586.111511.045601178.244600.358803.010502.30540HepG2DDX21
RC3H2ENSG00000056586.111532.662801152.761200.410804.269603.12480HepG2DDX24
RC3H2ENSG00000056586.111478.361202003.43040-0.438503.621302.91610HepG2DDX3X
RC3H2ENSG00000056586.11728.083101214.00690-0.737606.111305.01650HepG2DDX55
RC3H2ENSG00000056586.11831.024301137.54230-0.453007.463006.46310HepG2DNAJC2
RC3H2ENSG00000056586.112671.592801654.424700.691306.429405.54640HepG2EIF2S1
RC3H2ENSG00000056586.111363.617801828.28800-0.423102.931902.27350HepG2EIF4A3
RC3H2ENSG00000056586.112166.478901642.675600.399203.541602.62930HepG2EIF4G2
RC3H2ENSG00000056586.113088.479302347.214400.395807.532906.62290HepG2ETF1
RC3H2ENSG00000056586.11680.154201054.00280-0.631906.133503.63280HepG2EXOSC9
RC3H2ENSG00000056586.111094.522401844.80440-0.753209.475208.26450HepG2FXR1
RC3H2ENSG00000056586.11709.368101270.15160-0.840409.370308.23710HepG2GPKOW
RC3H2ENSG00000056586.111034.096401288.83620-0.317702.345901.70240HepG2HNRNPC
RC3H2ENSG00000056586.111193.680701583.47430-0.407707.709406.63340HepG2HNRNPL
RC3H2ENSG00000056586.11907.131601280.31600-0.497108.027507.03530HepG2HNRNPU
RC3H2ENSG00000056586.11948.343001211.10230-0.352802.457201.31970HepG2LIN28B
RC3H2ENSG00000056586.111515.215101899.45040-0.326102.142601.58220HepG2NCBP2
RC3H2ENSG00000056586.111145.827801723.65620-0.5891010.021208.60040HepG2NOL12
RC3H2ENSG00000056586.111324.948101052.264200.332303.874002.97270HepG2PRPF4
RC3H2ENSG00000056586.112094.244201745.307700.262802.317001.70170HepG2PUM2
RC3H2ENSG00000056586.112724.477201845.073500.5622010.677709.56630HepG2QKI
RC3H2ENSG00000056586.11846.087701339.94020-0.663303.695102.88370HepG2RAVER1
RC3H2ENSG00000056586.112008.726101674.577700.262402.126101.52900HepG2RBM25
RC3H2ENSG00000056586.111765.922201434.608400.299702.126601.51790HepG2RPLP0
RC3H2ENSG00000056586.111989.506201315.964200.596203.966402.83690HepG2RPS10
RC3H2ENSG00000056586.111574.472101282.591000.295702.155101.44400HepG2RPS2
RC3H2ENSG00000056586.111286.326901687.77760-0.391902.233801.51480HepG2RPS3A
RC3H2ENSG00000056586.111444.96460926.773100.640606.488005.34130HepG2RRP9
RC3H2ENSG00000056586.11836.851101140.18500-0.446206.619105.68670HepG2SAFB2
RC3H2ENSG00000056586.111635.379801199.770300.446804.269303.41020HepG2SF3B1
RC3H2ENSG00000056586.112074.222901773.716300.225702.644202.06370HepG2SF3B4
RC3H2ENSG00000056586.111848.707301577.527600.228802.765002.06350HepG2SLBP
RC3H2ENSG00000056586.111015.722401329.66020-0.388606.328705.41910HepG2SMN1
RC3H2ENSG00000056586.112180.638701334.954000.707905.367404.26860HepG2SNRNP70
RC3H2ENSG00000056586.112506.633502215.880300.177802.252401.78510HepG2SRFBP1
RC3H2ENSG00000056586.111611.610501851.42570-0.200101.960801.54370HepG2SRSF1
RC3H2ENSG00000056586.111962.421801624.477100.272603.187702.52350HepG2SRSF5
RC3H2ENSG00000056586.111998.531701506.276400.407907.531306.70190HepG2SRSF9
RC3H2ENSG00000056586.112619.259201923.970200.445009.857709.00450HepG2SSB
RC3H2ENSG00000056586.111765.699201252.166600.495702.916301.67960HepG2SUB1
RC3H2ENSG00000056586.111489.339501208.624500.301202.114801.51290HepG2SUPV3L1
RC3H2ENSG00000056586.111911.048801181.439500.693709.575308.34260HepG2TARDBP
RC3H2ENSG00000056586.11886.974201244.11070-0.488205.901005.22240HepG2TIAL1
RC3H2ENSG00000056586.11968.120201255.18440-0.374605.039504.32410HepG2TRIM56
RC3H2ENSG00000056586.112231.698101701.304200.391402.245101.49570HepG2UBE2L3
RC3H2ENSG00000056586.11612.874301106.99190-0.853005.533704.08210HepG2UPF2
RC3H2ENSG00000056586.111329.327201667.89890-0.327304.132402.88410HepG2UTP18
RC3H2ENSG00000056586.111138.452901566.62590-0.460607.272906.37850HepG2UTP3
RC3H2ENSG00000056586.111804.906001317.379300.454202.619501.39750HepG2XRCC5
RC3H2ENSG00000056586.11773.329101189.75530-0.621505.033204.06420HepG2XRN2
RC3H2ENSG00000056586.111229.303501038.454500.243302.550201.90050HepG2ZC3H8
RC3H2ENSG00000056586.112266.306501784.627300.344606.962006.19700HepG2ZNF622
RC3H2ENSG00000056586.112375.771901854.543400.357202.881702.28360K562AQR
RC3H2ENSG00000056586.11924.304301177.05980-0.348703.435801.93610K562BCCIP
RC3H2ENSG00000056586.112080.029301497.115700.474302.394501.41840K562CNOT7
RC3H2ENSG00000056586.111391.40710983.783800.500005.786804.66020K562CPSF6
RC3H2ENSG00000056586.113268.652502698.175200.276603.306302.23950K562CELF1
RC3H2ENSG00000056586.111315.215401840.02220-0.484404.995802.99960K562DDX19B
RC3H2ENSG00000056586.111508.444001756.05330-0.219302.070401.32430K562DKC1
RC3H2ENSG00000056586.11884.137701175.42820-0.410804.425303.42890K562EIF3G
RC3H2ENSG00000056586.11781.259101311.02820-0.746809.990908.26940K562FIP1L1
RC3H2ENSG00000056586.111590.287101174.790300.436802.760702.05450K562G3BP2
RC3H2ENSG00000056586.111418.189301806.22580-0.348903.130902.32860K562GRSF1
RC3H2ENSG00000056586.111299.653301605.35830-0.304802.566101.55050K562HNRNPL
RC3H2ENSG00000056586.111404.435901777.48360-0.339802.719301.93090K562HSPD1
RC3H2ENSG00000056586.11592.72170822.98860-0.473503.661801.93620K562NUSAP1
RC3H2ENSG00000056586.111718.940201167.338800.558204.194603.16950K562PCBP3
RC3H2ENSG00000056586.11520.70930816.06050-0.648206.336404.11490K562PHF6
RC3H2ENSG00000056586.111408.81240895.393900.6538010.007608.52610K562POLR2G
RC3H2ENSG00000056586.11979.549201488.26840-0.603406.990605.57830K562PPIG
RC3H2ENSG00000056586.11508.73850749.43590-0.558904.407603.22630K562PSIP1
RC3H2ENSG00000056586.113490.505102394.592800.543607.761406.38890K562PUF60
RC3H2ENSG00000056586.113041.230102546.714900.255902.851201.76700K562PUM1
RC3H2ENSG00000056586.11765.613501025.08800-0.421102.687101.88400K562RPS19
RC3H2ENSG00000056586.111724.855601176.465700.551908.244606.84110K562U2AF2
RC3H2ENSG00000056586.11809.547701050.20800-0.375502.635101.46280K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RC3H2 is not available on ENCORE database.





6 RBPs can affect the splicing of RC3H2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERC3H2ENSG00000056586.11chr9-1256136011256137151256133591256135081256162301256163650.302000.000000.00031includedHepG2TBRG4
SERC3H2ENSG00000056586.11chr9-125613601125613715125613359125613508125616230125616365-0.219000.000020.00058excludedHepG2U2AF2
SERC3H2ENSG00000056586.11chr9-125620201125620372125618010125618157125620947125621381-0.226000.010440.09437excludedHepG2U2AF2
SERC3H2ENSG00000056586.11chr9-125613601125613715125613359125613508125616230125616365-0.342000.000000.00096excludedHepG2SRSF7
SERC3H2ENSG00000056586.11chr9-125613601125613715125613359125613508125616230125616365-0.211000.001060.01790excludedK562PUS1
SERC3H2ENSG00000056586.11chr9-125613601125613715125613359125613508125616230125616365-0.404000.000010.00041excludedK562HNRNPC
A3SSRC3H2ENSG00000056586.11chr9-1256174621256177071256174621256176761256180101256181570.083000.000090.00079longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RC3H2 is not avaliable on ENCORE database.