FOXA1

General Information

Gene Name       : FOXA1
Gene ID             : ENSG00000129514.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FOXA1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FOXA1ENSG00000129514.50.000.010.01ENCSR000AEF
HepG2FOXA1ENSG00000129514.533.2138.0435.62ENCSR985KAT
K562FOXA1ENSG00000129514.50.791.090.94ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FOXA1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • FOXA1 RNA is bound by 10 proteins.  







eCLIP assay for FOXA1 is not avaliable on ENCORE database.





10 proteins are bound to FOXA1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr143805973038059819-3'-UTR,intron-Distal3.591065.62569HepG2IGF2BP1
chr143806191238061948-3'-UTR,CDS,intron-Distal3.1157716.32188HepG2PRPF8
chr143806182438061897-3'-UTR,CDS,intron-Distal3.461565.11891HepG2GRWD1
chr143806186038061912-3'-UTR,CDS,intron-Distal3.073829.07470HepG2PRPF8
chr143806189938062014-3'-UTR,CDS,intron-Distal6.2811016.87433HepG2AQR
chr143806183838061899-3'-UTR,CDS,intron-Distal4.772785.32906HepG2AQR
chr143806167538061821-3'-UTR,CDS,intron-Distal,intron-Proximal3.274638.73356HepG2GRWD1
chr143805972638059825-3'-UTR,intron-Distal4.187903.82009HepG2IGF2BP3
chr143806022638060301-3'-UTR,intron-Distal,intron-Proximal4.7833528.79607HepG2PCBP2
chr143806413338064210-5'-UTR,CDS,intron-Distal,intron-Proximal4.4404319.60986HepG2DDX3X
chr143806421038064324-5'-UTR,intron-Distal,intron-Proximal4.8216433.01257HepG2DDX3X
chr143806409338064110-CDS,intron-Distal4.7924615.81512HepG2AQR
chr143806398738064091-intron-Distal3.4238214.48871HepG2BUD13
chr143806398538064100-intron-Distal3.378178.33414HepG2EFTUD2
chr143806406538064093-intron-Distal4.5122217.18388HepG2AQR
chr143806402138064056-intron-Distal4.521533.59236HepG2AQR
chr143806390138063990-intron-Distal3.455566.14246HepG2XPO5
chr143806405838064106-intron-Distal3.5852016.58381HepG2PRPF8
chr143806432438064422-intron-Distal,intron-Proximal4.3685411.34202HepG2DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FOXA1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FOXA1 is not available on ENCORE database.

  • 104 RBPs can affect the levels of FOXA1.  








The Knockdown/knockout RNA-Seq assay for FOXA1 is not available on ENCORE database.





104 RBPs can affect the gene expression of FOXA1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FOXA1ENSG00000129514.43787.873502181.960400.7957010.036008.41480HepG2ABCF1
FOXA1ENSG00000129514.4978.077401196.99750-0.291403.297002.64300HepG2ACO1
FOXA1ENSG00000129514.41517.96680868.245500.8059011.030809.22270HepG2ADAR
FOXA1ENSG00000129514.41146.817801805.60580-0.654806.056405.30370HepG2AKAP1
FOXA1ENSG00000129514.42148.238901202.666100.8368025.1651023.20690HepG2AKAP8L
FOXA1ENSG00000129514.4761.023101101.55650-0.533503.881502.83350HepG2BCLAF1
FOXA1ENSG00000129514.43152.707302462.145700.356603.582302.91040HepG2BOP1
FOXA1ENSG00000129514.41443.239302042.82060-0.501303.582702.45860HepG2CCAR1
FOXA1ENSG00000129514.41905.763101419.408100.425003.648602.76920HepG2CIRBP
FOXA1ENSG00000129514.41487.233701196.791200.313404.464503.65850HepG2CKAP4
FOXA1ENSG00000129514.41476.706501066.616000.469202.417201.70530HepG2CNOT7
FOXA1ENSG00000129514.43059.915802260.449500.436803.706002.92240HepG2CPSF6
FOXA1ENSG00000129514.41166.11550783.096500.574306.184304.67910HepG2CSTF2
FOXA1ENSG00000129514.4841.829801311.70630-0.6398011.5717010.43300HepG2CELF1
FOXA1ENSG00000129514.41762.389901410.561300.321204.771403.83830HepG2DAZAP1
FOXA1ENSG00000129514.41521.386801107.075900.458508.707207.37900HepG2DDX19B
FOXA1ENSG00000129514.41101.85590852.647600.369803.078402.11410HepG2DDX24
FOXA1ENSG00000129514.4593.672501246.37170-1.0700013.0374011.51080HepG2DDX55
FOXA1ENSG00000129514.42407.546201746.096800.463304.774303.46890HepG2DDX5
FOXA1ENSG00000129514.41095.326501485.70220-0.439802.974202.33610HepG2DDX6
FOXA1ENSG00000129514.42039.235401145.216200.8323024.0478022.53650HepG2DKC1
FOXA1ENSG00000129514.41917.840901120.269100.7755010.423008.78350HepG2EEF2
FOXA1ENSG00000129514.42164.312101655.791200.386304.384702.92280HepG2EIF2S2
FOXA1ENSG00000129514.41173.97430909.391600.368302.430101.57800HepG2EIF3D
FOXA1ENSG00000129514.41264.24800822.930600.619306.034604.52840HepG2EIF3G
FOXA1ENSG00000129514.41989.409301578.595700.333602.084301.52690HepG2EIF4A3
FOXA1ENSG00000129514.41741.542601391.471800.323703.909002.94380HepG2EIF4G1
FOXA1ENSG00000129514.41832.297901332.964900.458904.289703.29050HepG2EIF4G2
FOXA1ENSG00000129514.42995.850301890.632700.6640010.511908.59370HepG2ESF1
FOXA1ENSG00000129514.43372.632902183.948500.6268017.5295016.22940HepG2ETF1
FOXA1ENSG00000129514.41710.327201169.728200.548007.180105.83840HepG2EWSR1
FOXA1ENSG00000129514.41278.14530779.675700.713007.837705.10950HepG2EXOSC9
FOXA1ENSG00000129514.41047.92740812.804300.366503.329402.03380HepG2FAM120A
FOXA1ENSG00000129514.41054.12650830.504900.343902.578101.46980HepG2FASTKD2
FOXA1ENSG00000129514.41545.258302203.41830-0.511903.267402.43710HepG2FIP1L1
FOXA1ENSG00000129514.41648.291401226.131700.426804.393303.41630HepG2FUBP3
FOXA1ENSG00000129514.42439.183401568.325900.637107.758306.24970HepG2G3BP2
FOXA1ENSG00000129514.42159.40310809.690701.4151014.2556012.36300HepG2GEMIN5
FOXA1ENSG00000129514.41746.253802562.57550-0.553304.595103.78130HepG2GPKOW
FOXA1ENSG00000129514.41901.74000882.672301.1073023.6203022.05350HepG2HNRNPA1
FOXA1ENSG00000129514.4984.734301296.27150-0.396605.351504.12480HepG2HNRNPA2B1
FOXA1ENSG00000129514.41709.94640981.798000.8004012.4608011.08170HepG2HNRNPC
FOXA1ENSG00000129514.42384.530201770.718700.429308.104006.95680HepG2HNRNPF
FOXA1ENSG00000129514.41843.234201520.713100.277402.223301.37030HepG2HNRNPM
FOXA1ENSG00000129514.41304.70670975.307800.419705.964305.10210HepG2HNRNPU
FOXA1ENSG00000129514.42273.716801743.658000.382804.633803.71820HepG2IGF2BP1
FOXA1ENSG00000129514.41108.710001501.79850-0.437803.424302.68070HepG2IGF2BP2
FOXA1ENSG00000129514.42204.578301409.219700.645502.203101.33470HepG2IGF2BP3
FOXA1ENSG00000129514.42883.564202157.937600.418102.735301.91040HepG2LARP4
FOXA1ENSG00000129514.41177.75990927.834100.344002.540601.38140HepG2LIN28B
FOXA1ENSG00000129514.41418.88810886.499200.678506.955304.41630HepG2LSM11
FOXA1ENSG00000129514.41034.79950748.271400.467603.774201.90290HepG2MARK2
FOXA1ENSG00000129514.43552.042102493.695800.510303.332402.26170HepG2MTPAP
FOXA1ENSG00000129514.41095.13430798.988900.454803.930002.21940HepG2NIP7
FOXA1ENSG00000129514.41641.486701144.385100.520302.527001.48660HepG2NONO
FOXA1ENSG00000129514.41251.05290679.813100.879806.423804.08530HepG2PA2G4
FOXA1ENSG00000129514.4685.35940974.83100-0.508302.333601.53130HepG2PABPC1
FOXA1ENSG00000129514.41296.74020752.047400.7859013.7877011.32590HepG2PKM
FOXA1ENSG00000129514.42235.124101722.432800.375802.382701.65840HepG2PRPF4
FOXA1ENSG00000129514.41833.685201141.513000.683704.963403.36770HepG2PRPF6
FOXA1ENSG00000129514.41627.370001335.139900.285502.092101.56350HepG2PUF60
FOXA1ENSG00000129514.41173.406301417.25950-0.272403.890303.21270HepG2PUM1
FOXA1ENSG00000129514.41688.526801416.255600.253601.991501.41660HepG2PUM2
FOXA1ENSG00000129514.42214.773501219.227500.8611030.4794028.83860HepG2PUS1
FOXA1ENSG00000129514.41964.678701594.481600.301103.028502.38000HepG2QKI
FOXA1ENSG00000129514.41565.321301065.518500.554805.513704.10080HepG2RBM27
FOXA1ENSG00000129514.41466.90590865.247800.761509.000507.10080HepG2RCC2
FOXA1ENSG00000129514.42794.326801638.410600.7701023.0391021.77780HepG2NELFE
FOXA1ENSG00000129514.42110.327601525.889500.467708.610807.61350HepG2RECQL
FOXA1ENSG00000129514.42423.337301907.413100.345303.068802.35530HepG2RPLP0
FOXA1ENSG00000129514.41948.459101029.405300.920408.480306.90220HepG2RPS10
FOXA1ENSG00000129514.41662.94370884.898400.9101017.3041015.96060HepG2RPS19
FOXA1ENSG00000129514.41881.71590982.695900.9371015.1982013.43510HepG2RPS2
FOXA1ENSG00000129514.41495.218501070.871800.481503.046702.20870HepG2RPS3A
FOXA1ENSG00000129514.41412.76180868.561600.7017016.7814015.39040HepG2SAFB2
FOXA1ENSG00000129514.43854.089002048.144900.9120010.278808.91380HepG2SF3A3
FOXA1ENSG00000129514.41372.736501012.901300.438507.907806.90890HepG2SMN1
FOXA1ENSG00000129514.41699.810201068.706100.669405.447904.07290HepG2SMNDC1
FOXA1ENSG00000129514.42369.605202061.646000.200802.193601.73100HepG2SRFBP1
FOXA1ENSG00000129514.42408.413501599.867600.5900014.3711013.47320HepG2SRSF1
FOXA1ENSG00000129514.41833.547201318.195700.476008.198307.19380HepG2SRSF5
FOXA1ENSG00000129514.42300.727201739.653000.403207.297206.25160HepG2SRSF7
FOXA1ENSG00000129514.41077.882101301.54940-0.272003.116602.53780HepG2SRSF9
FOXA1ENSG00000129514.43468.625901789.943600.9544042.4450041.01430HepG2SSB
FOXA1ENSG00000129514.41234.25100931.481700.405902.382201.37260HepG2STIP1
FOXA1ENSG00000129514.42407.090501499.203400.6830020.9049019.44950HepG2SUCLG1
FOXA1ENSG00000129514.41152.160601437.93270-0.319703.415902.80340HepG2TAF15
FOXA1ENSG00000129514.44394.211102383.125400.8826017.9832016.41960HepG2TARDBP
FOXA1ENSG00000129514.41617.07300947.737800.770708.763907.96390HepG2TIAL1
FOXA1ENSG00000129514.41835.037201304.292800.492405.955304.60790HepG2TUFM
FOXA1ENSG00000129514.43050.139401885.287300.6940010.008108.79860HepG2U2AF1
FOXA1ENSG00000129514.4449.70680732.98920-0.704806.235205.08710HepG2UCHL5
FOXA1ENSG00000129514.42011.470401753.652700.197802.242801.69150HepG2UTP3
FOXA1ENSG00000129514.41740.043201152.406700.594404.217702.91790HepG2XRCC6
FOXA1ENSG00000129514.41726.659101221.408900.499304.728203.78910HepG2XRN2
FOXA1ENSG00000129514.42464.199501699.816700.535605.927505.00230HepG2ZC3H8
FOXA1ENSG00000129514.41656.550501046.986100.661805.409103.52930HepG2ZRANB2
FOXA1ENSG00000129514.4109.5162054.901900.996102.853302.25720K562AQR
FOXA1ENSG00000129514.4112.2475054.570401.040404.015202.23450K562DDX19B
FOXA1ENSG00000129514.4142.1975080.519000.820402.930802.04990K562FMR1
FOXA1ENSG00000129514.474.0225034.391501.105802.857602.13690K562G3BP2
FOXA1ENSG00000129514.498.9779052.870100.904603.096901.88730K562GLRX3
FOXA1ENSG00000129514.423.7886054.69590-1.201202.371801.51280K562HNRNPM
FOXA1ENSG00000129514.4147.8331080.342000.879603.309602.06890K562MSI2
FOXA1ENSG00000129514.4141.4185067.563101.065603.699501.57750K562PPIL4
FOXA1ENSG00000129514.461.6202031.000000.991002.096901.32050K562PSIP1
FOXA1ENSG00000129514.476.8686034.423301.158903.579302.66450K562U2AF2
FOXA1ENSG00000129514.4121.2813061.850100.971403.877602.82490K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FOXA1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of FOXA1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for FOXA1 is not avaliable on ENCORE database.