C4BPA

General Information

Gene Name       : C4BPA
Gene ID             : ENSG00000123838.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C4BPA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C4BPAENSG00000123838.100.000.000.00ENCSR000AEF
HepG2C4BPAENSG00000123838.1019.4725.8722.67ENCSR985KAT
K562C4BPAENSG00000123838.100.040.050.04ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C4BPA is not avaliable on ENCORE database.



Proteins bound to RNA
  • C4BPA RNA is bound by 2 proteins.  







eCLIP assay for C4BPA is not avaliable on ENCORE database.





2 proteins are bound to C4BPA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1207297301207297347+CDS4.991185.85174HepG2SND1
chr1207317888207317915+CDS,intron-Proximal3.806093.19472HepG2SND1
chr1207317283207317341+CDS,intron-Proximal3.913775.31724HepG2SND1
chr1207307884207307935+CDS4.848963.31432HepG2SND1
chr1207291516207291627+intron-Distal4.022175.36899HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C4BPA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C4BPA is not available on ENCORE database.

  • 134 RBPs can affect the levels of C4BPA.  








The Knockdown/knockout RNA-Seq assay for C4BPA is not available on ENCORE database.





134 RBPs can affect the gene expression of C4BPA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C4BPAENSG00000123838.61515.176501009.827100.585304.600302.45200HepG2AARS
C4BPAENSG00000123838.62077.132901240.401800.743709.105307.55150HepG2ABCF1
C4BPAENSG00000123838.6445.172701209.08170-1.4415051.5298049.72370HepG2ACO1
C4BPAENSG00000123838.61618.43940907.885300.8339011.9347010.06910HepG2ADAR
C4BPAENSG00000123838.6281.278001471.07930-2.3868044.7132042.96160HepG2AKAP1
C4BPAENSG00000123838.62253.889001214.705800.8917028.8001026.72130HepG2AKAP8L
C4BPAENSG00000123838.61359.87280764.590400.830603.714901.79120HepG2APOBEC3C
C4BPAENSG00000123838.62175.620001217.233200.8377011.9106010.37150HepG2ASCC1
C4BPAENSG00000123838.62489.404301119.416301.1530028.0526024.45640HepG2ATP5C1
C4BPAENSG00000123838.62055.028101343.184500.6134014.1104012.77200HepG2AUH
C4BPAENSG00000123838.6644.731701030.28570-0.676303.898002.78560HepG2BCCIP
C4BPAENSG00000123838.61157.68870895.362900.370602.551501.68710HepG2BCLAF1
C4BPAENSG00000123838.61392.38230929.377500.583107.120405.22160HepG2BUD13
C4BPAENSG00000123838.61829.491801250.742400.548604.092802.89470HepG2CCAR1
C4BPAENSG00000123838.61876.721601156.442900.698408.696407.38700HepG2CIRBP
C4BPAENSG00000123838.61686.443301208.751000.480409.228208.15170HepG2CKAP4
C4BPAENSG00000123838.62885.11530818.785101.8170027.8282025.49640HepG2CNOT7
C4BPAENSG00000123838.61959.09560617.417001.6658044.4242042.14830HepG2CPSF6
C4BPAENSG00000123838.6813.797801021.54960-0.328002.358601.33910HepG2CPSF7
C4BPAENSG00000123838.6512.84710931.00460-0.8603014.7865012.57310HepG2YBX3
C4BPAENSG00000123838.6770.746401198.58250-0.6370010.754809.65010HepG2CELF1
C4BPAENSG00000123838.61760.543101288.851500.449805.200604.23080HepG2DAZAP1
C4BPAENSG00000123838.61279.82240932.342000.456905.845304.21900HepG2DDX1
C4BPAENSG00000123838.6617.598001012.19360-0.712708.495407.37750HepG2DDX21
C4BPAENSG00000123838.6771.07060990.77920-0.361702.958802.01100HepG2DDX24
C4BPAENSG00000123838.62984.926501409.265401.0827019.4003017.90570HepG2DDX3X
C4BPAENSG00000123838.61339.94400808.962600.727909.648307.42260HepG2DDX47
C4BPAENSG00000123838.62296.69240701.122701.7117020.8689018.45780HepG2DDX59
C4BPAENSG00000123838.62160.380601149.155600.9106015.4673013.33930HepG2DDX5
C4BPAENSG00000123838.61655.478501210.393400.451703.265102.60000HepG2DDX6
C4BPAENSG00000123838.61781.03500881.756701.014203.742902.60980HepG2DHX30
C4BPAENSG00000123838.61468.50460906.079200.6965010.642909.46120HepG2DNAJC2
C4BPAENSG00000123838.61467.51870901.392500.703107.961506.48190HepG2EEF2
C4BPAENSG00000123838.61522.02940751.388101.0183016.1844013.64900HepG2EFTUD2
C4BPAENSG00000123838.6895.520601163.77380-0.378002.481301.91800HepG2EIF2S1
C4BPAENSG00000123838.6508.28440731.69520-0.525603.375602.38210HepG2EIF3D
C4BPAENSG00000123838.6875.585401286.20040-0.554804.337103.54060HepG2EIF4A3
C4BPAENSG00000123838.6806.162301252.11810-0.635204.423403.56450HepG2EIF4B
C4BPAENSG00000123838.64084.349001217.991101.7455047.6381044.87920HepG2EIF4G2
C4BPAENSG00000123838.6721.821901074.53440-0.574005.596404.09460HepG2ESF1
C4BPAENSG00000123838.61069.095401542.16650-0.528609.028208.04580HepG2ETF1
C4BPAENSG00000123838.6802.736701181.42860-0.557506.449305.17640HepG2EWSR1
C4BPAENSG00000123838.6596.87270905.72520-0.601705.260902.91630HepG2EXOSC9
C4BPAENSG00000123838.6538.333501252.51820-1.2183016.1618014.55940HepG2FIP1L1
C4BPAENSG00000123838.61115.28010843.183800.403402.828901.54660HepG2FKBP4
C4BPAENSG00000123838.62178.388001205.733600.853207.962905.29170HepG2FMR1
C4BPAENSG00000123838.61760.43470618.477501.5090010.795308.83250HepG2FTO
C4BPAENSG00000123838.6456.32020810.96280-0.8296010.183408.72280HepG2FUBP3
C4BPAENSG00000123838.6937.075301297.43930-0.469403.675802.88650HepG2FXR1
C4BPAENSG00000123838.61616.329501277.702300.339102.402801.57370HepG2G3BP2
C4BPAENSG00000123838.61023.06000651.469800.651006.414405.05240HepG2GEMIN5
C4BPAENSG00000123838.61252.39860964.787300.376302.315801.38730HepG2GNB2L1
C4BPAENSG00000123838.61220.47910699.887500.802206.720905.75040HepG2GPKOW
C4BPAENSG00000123838.62429.47330895.464501.4398028.8959024.72270HepG2GRWD1
C4BPAENSG00000123838.61630.213201099.245700.568403.520801.75160HepG2GTF2F1
C4BPAENSG00000123838.6737.601601154.28570-0.6461012.0661010.24750HepG2HDGF
C4BPAENSG00000123838.6580.43940922.98880-0.669207.451306.46720HepG2HNRNPA1
C4BPAENSG00000123838.62358.758201184.452300.9937034.1146031.59710HepG2HNRNPA2B1
C4BPAENSG00000123838.61174.22750675.829600.796907.427305.00000HepG2HNRNPAB
C4BPAENSG00000123838.6351.527501026.62820-1.5462030.8741028.85530HepG2HNRNPC
C4BPAENSG00000123838.62233.191101016.216901.1358038.5966036.46640HepG2HNRNPF
C4BPAENSG00000123838.6937.732301218.52210-0.377902.785402.08420HepG2HNRNPK
C4BPAENSG00000123838.61876.439201174.069600.6764011.204409.92870HepG2HNRNPL
C4BPAENSG00000123838.61547.51690667.915801.2121011.4887010.31590HepG2HNRNPLL
C4BPAENSG00000123838.6264.25050864.21190-1.7095037.3801034.69280HepG2HNRNPM
C4BPAENSG00000123838.61236.261701019.842700.277502.919702.29860HepG2HNRNPU
C4BPAENSG00000123838.62637.810301000.670201.3983046.5216044.17100HepG2IGF2BP1
C4BPAENSG00000123838.61846.485201223.602000.593506.364405.37810HepG2IGF2BP2
C4BPAENSG00000123838.61648.147701041.740000.6618018.9038017.18160HepG2ILF2
C4BPAENSG00000123838.61203.62560854.042700.494903.862701.94280HepG2CCAR2
C4BPAENSG00000123838.63641.207001383.872201.3956022.2838018.94290HepG2KRR1
C4BPAENSG00000123838.61699.190301320.923500.363202.096601.38140HepG2LARP4
C4BPAENSG00000123838.62619.799901297.891001.0132016.8504015.30120HepG2MAGOH
C4BPAENSG00000123838.6795.036501305.20120-0.715206.760805.80900HepG2MATR3
C4BPAENSG00000123838.61206.86670681.193500.825006.461304.94330HepG2MTPAP
C4BPAENSG00000123838.62644.569601335.983400.9850015.5331014.11580HepG2NCBP2
C4BPAENSG00000123838.6751.876501278.01810-0.7653013.8025012.15940HepG2NOL12
C4BPAENSG00000123838.61750.25050929.795600.912506.837705.10180HepG2NONO
C4BPAENSG00000123838.61183.31460592.237100.9985014.5427012.97210HepG2NSUN2
C4BPAENSG00000123838.6380.71860748.27030-0.974806.616905.19870HepG2PABPC1
C4BPAENSG00000123838.6647.869101009.50240-0.6399010.310808.85330HepG2PARN
C4BPAENSG00000123838.61494.399201224.793800.286903.180802.53820HepG2PCBP1
C4BPAENSG00000123838.61676.36440907.211800.8857010.596307.63010HepG2PHF6
C4BPAENSG00000123838.6471.31050909.62270-0.9486017.7713016.01460HepG2PPIL4
C4BPAENSG00000123838.61684.67780781.738901.1076019.1979017.35330HepG2PRPF8
C4BPAENSG00000123838.61671.532701246.234900.423506.289105.52960HepG2PTBP1
C4BPAENSG00000123838.62655.964001219.957601.1223027.9357026.30790HepG2PUF60
C4BPAENSG00000123838.61951.617701295.012500.5916016.2980015.10430HepG2PUM1
C4BPAENSG00000123838.61687.417801231.518200.454308.546107.56440HepG2PUS1
C4BPAENSG00000123838.6484.524201066.15690-1.137808.555407.35930HepG2RAVER1
C4BPAENSG00000123838.6301.810401288.96350-2.0945075.9879074.02140HepG2RBM22
C4BPAENSG00000123838.6729.674501224.98590-0.747409.352208.16780HepG2RBM25
C4BPAENSG00000123838.6369.15280790.70440-1.0989010.443807.65790HepG2RBM47
C4BPAENSG00000123838.6875.999601386.97190-0.6629012.7193011.71600HepG2NELFE
C4BPAENSG00000123838.61049.302701291.71770-0.299903.307602.64190HepG2RECQL
C4BPAENSG00000123838.61944.154201094.914000.828206.548205.56050HepG2RPLP0
C4BPAENSG00000123838.62492.793201046.955301.2515015.1206013.12520HepG2RPS10
C4BPAENSG00000123838.6944.93420712.008300.408203.344602.67690HepG2RPS19
C4BPAENSG00000123838.61815.832701050.822500.7890011.090909.57590HepG2RPS2
C4BPAENSG00000123838.61153.68620821.879500.489202.971502.14440HepG2RPS3A
C4BPAENSG00000123838.62291.214801159.472700.982509.639706.96070HepG2RTF1
C4BPAENSG00000123838.61733.21210908.230400.9322031.3389029.51030HepG2SAFB2
C4BPAENSG00000123838.6512.80340773.95110-0.593804.025402.46030HepG2SART3
C4BPAENSG00000123838.61448.43380714.553301.0193016.1966014.04930HepG2SERBP1
C4BPAENSG00000123838.6879.32280661.103000.411402.937802.20990HepG2SF3B1
C4BPAENSG00000123838.6785.862001297.56060-0.7235014.6174013.42240HepG2SF3B4
C4BPAENSG00000123838.62158.089001039.890601.053205.870403.65480HepG2SLTM
C4BPAENSG00000123838.6703.541801059.17620-0.590205.845704.96480HepG2SMN1
C4BPAENSG00000123838.62436.100801086.089501.1653015.2753012.97590HepG2SMNDC1
C4BPAENSG00000123838.61559.784101036.620500.589404.392402.34670HepG2SND1
C4BPAENSG00000123838.6733.369301455.83280-0.9892029.3310028.14850HepG2SRFBP1
C4BPAENSG00000123838.63016.207801354.344101.1550021.4514020.39790HepG2SRSF1
C4BPAENSG00000123838.61545.03280711.353801.118905.429003.98710HepG2SRSF3
C4BPAENSG00000123838.62143.570201204.498800.8315025.0142023.40590HepG2SRSF5
C4BPAENSG00000123838.62084.30710998.445601.0617021.3392019.74000HepG2SRSF7
C4BPAENSG00000123838.62868.935101264.000501.1824057.7479056.15430HepG2SSB
C4BPAENSG00000123838.6861.330801379.91690-0.679906.439104.58840HepG2SSRP1
C4BPAENSG00000123838.6581.92650836.63990-0.523803.055401.76350HepG2STAU1
C4BPAENSG00000123838.6947.454601369.87410-0.531908.787307.78380HepG2SUCLG1
C4BPAENSG00000123838.61978.529401397.008600.502003.159301.73570HepG2SUGP2
C4BPAENSG00000123838.6608.67250845.79860-0.474604.364503.19720HepG2SUPT6H
C4BPAENSG00000123838.62111.355001008.448401.0659017.3920015.94960HepG2SUPV3L1
C4BPAENSG00000123838.62148.50370651.018601.7225049.9058047.55370HepG2TARDBP
C4BPAENSG00000123838.61497.00900991.065900.594908.877808.07400HepG2TIAL1
C4BPAENSG00000123838.6492.77500999.81990-1.0207024.1765022.71400HepG2TRIM56
C4BPAENSG00000123838.61455.917501071.473400.442203.701002.97760HepG2U2AF1
C4BPAENSG00000123838.62305.840801261.477300.8701011.264209.52220HepG2UBE2L3
C4BPAENSG00000123838.6432.38970595.79150-0.462502.191401.51480HepG2UCHL5
C4BPAENSG00000123838.61676.32450992.085300.7567013.3021011.98630HepG2UPF1
C4BPAENSG00000123838.6459.86640923.69990-1.006206.635705.03730HepG2UPF2
C4BPAENSG00000123838.6723.134601019.72870-0.495806.464304.93330HepG2UTP18
C4BPAENSG00000123838.6750.80920957.82020-0.351303.607802.93910HepG2UTP3
C4BPAENSG00000123838.6610.761901172.31180-0.940707.026105.40520HepG2XRCC6
C4BPAENSG00000123838.61833.19410841.702901.1229046.1408044.08730HepG2ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C4BPA is not available on ENCORE database.





1 RBPs can affect the splicing of C4BPA :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC4BPAENSG00000123838.6chr1+2072880202072881162072874442072876302072887602072888100.065000.000660.02796includedHepG2HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C4BPA is not avaliable on ENCORE database.