EFR3A

General Information

Gene Name       : EFR3A
Gene ID             : ENSG00000132294.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: EFR3A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878EFR3AENSG00000132294.1419.5517.5118.53ENCSR000AEF
HepG2EFR3AENSG00000132294.1411.6016.5514.07ENCSR985KAT
K562EFR3AENSG00000132294.148.899.569.23ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for EFR3A is not avaliable on ENCORE database.



Proteins bound to RNA
  • EFR3A RNA is bound by 13 proteins.  







eCLIP assay for EFR3A is not avaliable on ENCORE database.





13 proteins are bound to EFR3A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr8133025163133025249+3'-UTR4.369999.51401HepG2FUBP3
chr8133025427133025495+3'-UTR3.544155.89529K562PUM2
chr8133025668133025757+3'-UTR3.959323.45805K562KHSRP
chr8132916370132916472+5'-UTR3.897755.44438HepG2DDX3X
chr8132982753132982890+CDS5.1759715.74878K562ZNF622
chr8132968059132968116+CDS3.128154.14618K562ZNF622
chr8132982672132982742+CDS,intron-Proximal4.430437.56947K562SF3B4
chr8132988273132988323+CDS,intron-Proximal4.566135.10960K562ZNF622
chr8132996418132996457+CDS3.484023.28366HepG2BCLAF1
chr8132991594132991668+CDS5.173817.84234K562ZNF622
chr8132998439132998502+CDS,intron-Proximal3.775884.82082K562ZNF622
chr8132996384132996432+CDS,intron-Proximal3.856375.80935K562ZNF622
chr8132982716132982755+CDS,intron-Proximal3.793323.02097K562U2AF1
chr8132991144132991222+CDS3.718564.79276K562ZNF622
chr8133013961133014059+CDS,intron-Proximal3.358477.00923K562SF3B4
chr8132980650132980763+CDS,intron-Proximal4.009586.40042K562EFTUD2
chr8132996384132996418+CDS,intron-Proximal4.512874.78529HepG2BCLAF1
chr8132991222132991267+CDS,intron-Proximal4.442174.90367K562ZNF622
chr8132920008132920126+intron-Distal4.042624.07750HepG2HNRNPK
chr8132920019132920129+intron-Distal6.6137425.21459HepG2PCBP2
chr8133017193133017307+intron-Distal5.635607.94162K562QKI
chr8132983145132983223+intron-Distal4.130663.74583HepG2PTBP1
chr8132921349132921425+intron-Distal4.113524.05848HepG2QKI
chr8132926205132926258+intron-Distal5.048884.85866HepG2QKI
chr8132926181132926268+intron-Distal6.0650411.26038K562QKI
chr8132918777132918855+intron-Distal3.720303.02234K562KHSRP
chr8132935131132935217+intron-Distal4.065884.37030K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for EFR3A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for EFR3A is not available on ENCORE database.

  • 97 RBPs can affect the levels of EFR3A.  








The Knockdown/knockout RNA-Seq assay for EFR3A is not available on ENCORE database.





97 RBPs can affect the gene expression of EFR3A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
EFR3AENSG00000132294.91352.532001068.535600.339904.567603.82360HepG2ACO1
EFR3AENSG00000132294.9628.15190898.48120-0.516404.284503.07320HepG2ADAR
EFR3AENSG00000132294.92408.575201286.116600.9051011.4397010.43000HepG2AKAP1
EFR3AENSG00000132294.91295.880301073.594200.271402.796002.02570HepG2AKAP8L
EFR3AENSG00000132294.91538.748201064.119400.532004.846703.82030HepG2ASCC1
EFR3AENSG00000132294.92254.268901676.868600.426805.423604.51760HepG2AUH
EFR3AENSG00000132294.9744.702301115.17760-0.582504.090602.95320HepG2BCCIP
EFR3AENSG00000132294.91901.436701118.250900.7657014.6925013.16030HepG2CALR
EFR3AENSG00000132294.91276.563601010.997700.336402.179601.48830HepG2CIRBP
EFR3AENSG00000132294.91226.713301068.349500.199301.899901.33430HepG2CKAP4
EFR3AENSG00000132294.9704.45210921.35740-0.387303.868202.65900HepG2YBX3
EFR3AENSG00000132294.91641.705201232.989900.412905.832204.96500HepG2CELF1
EFR3AENSG00000132294.91063.28290829.818400.357602.902201.96360HepG2DDX24
EFR3AENSG00000132294.91782.783701231.929200.533104.862804.05220HepG2DDX3X
EFR3AENSG00000132294.9787.935201096.42390-0.476702.908302.11820HepG2DDX55
EFR3AENSG00000132294.9519.905301058.42510-1.0256011.6131010.45240HepG2DDX6
EFR3AENSG00000132294.9703.63710904.76730-0.362703.431702.65410HepG2DNAJC21
EFR3AENSG00000132294.9731.62620896.68580-0.293503.002102.32780HepG2DNAJC2
EFR3AENSG00000132294.91102.01380786.209300.487103.282002.28540HepG2EEF2
EFR3AENSG00000132294.9917.34410655.521400.484703.694302.40290HepG2EFTUD2
EFR3AENSG00000132294.9970.43290638.286100.604305.351104.12340HepG2EIF3D
EFR3AENSG00000132294.91811.512401094.699000.726605.173004.25170HepG2EIF4B
EFR3AENSG00000132294.91544.355301307.955500.239602.225201.46020HepG2EIF4G1
EFR3AENSG00000132294.91260.052801044.191200.271002.013301.30340HepG2EWSR1
EFR3AENSG00000132294.9499.88540758.76930-0.602104.989802.71460HepG2EXOSC9
EFR3AENSG00000132294.91691.930701259.092200.426202.366001.64980HepG2FIP1L1
EFR3AENSG00000132294.91482.619701052.278500.494503.984803.19440HepG2G3BP1
EFR3AENSG00000132294.9722.45020568.329000.346102.187301.39720HepG2GEMIN5
EFR3AENSG00000132294.9971.115601370.38980-0.496907.903806.76990HepG2HNRNPF
EFR3AENSG00000132294.9772.288901207.72220-0.6451013.7487012.35620HepG2HNRNPL
EFR3AENSG00000132294.92265.602801780.613900.347402.842602.20540HepG2HNRNPLL
EFR3AENSG00000132294.91216.53470868.933900.485405.596504.29660HepG2HNRNPM
EFR3AENSG00000132294.9853.647401349.44420-0.660709.995808.70240HepG2IGF2BP1
EFR3AENSG00000132294.91762.845701003.935300.812102.201901.33410HepG2IGF2BP3
EFR3AENSG00000132294.9820.33590976.80420-0.251902.486501.51850HepG2KIF1C
EFR3AENSG00000132294.91438.503801141.203100.333901.926201.39530HepG2MATR3
EFR3AENSG00000132294.9906.050501314.66640-0.537007.471606.23410HepG2NOL12
EFR3AENSG00000132294.9520.63460854.36220-0.714604.040302.95410HepG2PABPC1
EFR3AENSG00000132294.9756.875001040.07400-0.458603.357402.56730HepG2PABPC4
EFR3AENSG00000132294.9663.51410997.94790-0.588809.224708.22150HepG2PCBP1
EFR3AENSG00000132294.9650.96450900.20360-0.467704.689503.75650HepG2PPIL4
EFR3AENSG00000132294.91316.47510935.439000.492907.560606.35980HepG2PRPF4
EFR3AENSG00000132294.91315.10900845.952100.636406.608505.42180HepG2PRPF8
EFR3AENSG00000132294.9570.40170982.26670-0.784104.132601.96420HepG2PSIP1
EFR3AENSG00000132294.91623.378301015.413200.6768014.6362013.57100HepG2PTBP1
EFR3AENSG00000132294.91031.212701254.95260-0.283302.067601.54100HepG2PUF60
EFR3AENSG00000132294.91711.466001332.174200.361306.212705.39790HepG2PUM1
EFR3AENSG00000132294.91641.876101088.379600.5931013.3130012.13740HepG2PUS1
EFR3AENSG00000132294.91700.957001099.794500.6290010.379709.27970HepG2QKI
EFR3AENSG00000132294.93354.765901609.146601.0598039.7571038.23850HepG2RBM22
EFR3AENSG00000132294.91416.77300998.105100.505205.685904.75070HepG2RBM25
EFR3AENSG00000132294.91555.117201130.087400.460506.750405.96960HepG2NELFE
EFR3AENSG00000132294.9798.28200621.024900.362102.675402.06980HepG2RPS19
EFR3AENSG00000132294.91137.45550836.836400.442703.139302.30950HepG2RRP9
EFR3AENSG00000132294.9743.84170898.82760-0.273002.537101.91590HepG2SAFB2
EFR3AENSG00000132294.9851.28050623.383200.449403.445302.39220HepG2SERBP1
EFR3AENSG00000132294.92565.070201762.539300.541203.410902.63450HepG2SF3B1
EFR3AENSG00000132294.91275.930801057.240900.271102.549001.97760HepG2SF3B4
EFR3AENSG00000132294.92058.333801817.485000.179401.980701.53530HepG2SRFBP1
EFR3AENSG00000132294.91963.034201103.504200.8309023.9424022.85050HepG2SRSF1
EFR3AENSG00000132294.91157.206701346.35770-0.218402.057901.44760HepG2SRSF7
EFR3AENSG00000132294.9742.24630897.73670-0.274402.623602.08270HepG2SRSF9
EFR3AENSG00000132294.91895.750201578.030400.264503.394602.83960HepG2SSB
EFR3AENSG00000132294.9551.89070815.95350-0.564103.753802.45270HepG2STIP1
EFR3AENSG00000132294.92059.355301409.174100.5472013.1569011.96680HepG2SUCLG1
EFR3AENSG00000132294.9794.65660991.79940-0.319702.912202.33850HepG2TAF15
EFR3AENSG00000132294.92142.510401735.164700.304102.456401.76780HepG2TARDBP
EFR3AENSG00000132294.9833.01950989.46470-0.248302.257701.73800HepG2TRIM56
EFR3AENSG00000132294.92041.180801077.265400.9219011.3601010.06280HepG2U2AF1
EFR3AENSG00000132294.9453.36320644.82200-0.508203.313702.48490HepG2UCHL5
EFR3AENSG00000132294.91769.241501191.254800.5705012.7906011.49340HepG2UPF1
EFR3AENSG00000132294.9572.33810999.60920-0.804505.384403.95790HepG2UPF2
EFR3AENSG00000132294.91453.449101150.114900.337604.414303.68660HepG2UTP3
EFR3AENSG00000132294.9527.051201074.47690-1.0276012.8856011.33960HepG2XRN2
EFR3AENSG00000132294.91075.15240923.163400.219801.997501.41270HepG2ZC3H8
EFR3AENSG00000132294.9745.92540538.581700.469803.554502.19830K562AARS
EFR3AENSG00000132294.91545.595501101.808700.488208.290207.38040K562AGGF1
EFR3AENSG00000132294.91514.087401146.486000.401103.782303.01660K562AKAP8L
EFR3AENSG00000132294.91242.86570849.849600.548305.104403.90810K562BOP1
EFR3AENSG00000132294.92713.145301853.993900.549209.265507.52870K562CELF1
EFR3AENSG00000132294.91686.347401292.723500.383403.354401.73670K562DDX19B
EFR3AENSG00000132294.91442.414501233.675200.225402.055901.31250K562DKC1
EFR3AENSG00000132294.91002.10540631.910800.665105.588404.04820K562EIF3D
EFR3AENSG00000132294.91944.325101507.861400.366705.222803.95150K562EIF4G2
EFR3AENSG00000132294.9667.30370979.77050-0.554105.401904.19290K562FIP1L1
EFR3AENSG00000132294.9740.20040511.634200.532703.859902.50080K562FKBP4
EFR3AENSG00000132294.9925.43220648.961800.511905.550503.58200K562FUS
EFR3AENSG00000132294.91435.48520859.035500.740603.839602.97660K562G3BP2
EFR3AENSG00000132294.9656.48420862.73540-0.394202.944902.12640K562GPKOW
EFR3AENSG00000132294.9814.583601157.70570-0.507105.147304.11290K562GRSF1
EFR3AENSG00000132294.91759.307501216.693800.531906.289504.92940K562KIF1C
EFR3AENSG00000132294.91731.585201363.006300.345202.919701.97790K562MBNL1
EFR3AENSG00000132294.92000.811001607.235900.315902.631501.53300K562MSI2
EFR3AENSG00000132294.9720.17790867.80720-0.269002.300401.56130K562MTPAP
EFR3AENSG00000132294.91544.72920955.370000.693106.001304.51730K562NAA15
EFR3AENSG00000132294.9760.845701112.15920-0.547705.173003.99470K562PPIG
EFR3AENSG00000132294.9783.39100574.283400.447903.123902.32590K562PRPF8
EFR3AENSG00000132294.9320.58940528.38350-0.720903.554302.51100K562PSIP1
EFR3AENSG00000132294.92329.369701749.891300.412605.464603.92210K562PUM1
EFR3AENSG00000132294.92207.030701136.970100.9568016.6518015.35860K562PUS1
EFR3AENSG00000132294.91260.87020819.692700.621203.560401.91400K562RAVER1
EFR3AENSG00000132294.91546.903201107.830500.481506.777205.87490K562RBM15
EFR3AENSG00000132294.9624.33180951.44640-0.607808.066906.73520K562SF3A3
EFR3AENSG00000132294.91133.37150820.513000.465903.278002.21640K562SF3B1
EFR3AENSG00000132294.91420.06370974.781500.5427010.779009.07470K562SRPK2
EFR3AENSG00000132294.9684.05860881.09320-0.365202.631801.61130K562SRSF4
EFR3AENSG00000132294.91034.52710860.231300.266102.012201.32760K562U2AF2
EFR3AENSG00000132294.91830.711801448.955000.337302.943102.04900K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for EFR3A is not available on ENCORE database.





9 RBPs can affect the splicing of EFR3A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEEFR3AENSG00000132294.9chr8+1330130151330132451330086361330087441330140051330140540.262000.000010.00692includedK562PCBP1
SEEFR3AENSG00000132294.9chr8+1330130151330132451330086361330087441330140051330140540.171000.000090.00151includedK562AQR
SEEFR3AENSG00000132294.9chr8+1329979791329980801329971751329973071329984401329985080.058000.004060.03924includedK562AQR
SEEFR3AENSG00000132294.9chr8+133008652133008744132999821132999949133014005133014054-0.143000.000150.00237excludedK562AQR
SEEFR3AENSG00000132294.9chr8+133013015133013245133008636133008744133014005133014054-0.235000.000000.00022excludedK562FXR1
SEEFR3AENSG00000132294.9chr8+1330130151330132451330086361330087441330140051330140540.243000.001240.08549includedK562SUPV3L1
SEEFR3AENSG00000132294.9chr8+1330130151330132451330086361330087441330140051330140540.119000.000320.05645includedK562NSUN2
SEEFR3AENSG00000132294.9chr8+1329979461329980801329971751329973071329984401329985080.059000.000630.02141includedHepG2SF3A3
SEEFR3AENSG00000132294.9chr8+1330130151330132451330086361330087441330140051330140540.097000.000020.00424includedK562HNRNPUL1
SEEFR3AENSG00000132294.9chr8+1330130151330132451330086361330087441330140051330140540.104000.000170.02454includedHepG2TAF15
SEEFR3AENSG00000132294.9chr8+1330130151330132451330086361330087441330140051330140540.144000.000550.01709includedK562RBM15
A3SSEFR3AENSG00000132294.9chr8+1330086201330087441330086521330087441329998211329999490.134000.002630.01642longerK562AQR
A3SSEFR3AENSG00000132294.9chr8+1329892701329893391329892871329893391329882731329883880.067000.000720.00516longerK562AQR
A3SSEFR3AENSG00000132294.9chr8+1330148281330149531330148491330149531330140051330140540.193000.000120.00101longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for EFR3A is not avaliable on ENCORE database.