RFC5

General Information

Gene Name : RFC5
Gene ID : ENSG00000111445.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RFC5)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RFC5	ENSG00000111445.13	33.42	34.65	34.03	ENCSR000AEF
HepG2	RFC5	ENSG00000111445.13	37.07	47.22	42.14	ENCSR985KAT
K562	RFC5	ENSG00000111445.13	75.75	71.71	73.73	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RFC5 is not avaliable on ENCORE database.

Proteins bound to RNA

RFC5 RNA is bound by 17 proteins.

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eCLIP assay for RFC5 is not avaliable on ENCORE database.

17 proteins are bound to RFC5 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	118457436	118457540	+	3'-UTR,5'-UTR,CDS,intron-Proximal	4.17718	16.54683	K562	YBX3
chr12	118469888	118469931	+	3'-UTR,intron-Distal	5.19324	13.22336	K562	PABPC4
chr12	118454696	118454742	+	5'-UTR,CDS,intron-Distal,intron-Proximal	6.36059	12.64691	K562	AQR
chr12	118456901	118457031	+	5'-UTR,CDS,intron-Proximal	3.98426	12.44852	K562	PRPF8
chr12	118469793	118469843	+	3'-UTR,intron-Distal	5.01247	11.42666	K562	PUM2
chr12	118454747	118454836	+	intron-Distal,intron-Proximal	5.11936	10.88793	HepG2	EFTUD2
chr12	118467559	118467629	+	CDS,intron-Proximal	3.61893	10.21568	K562	BUD13
chr12	118467508	118467631	+	CDS,intron-Proximal	4.96597	10.00853	K562	SF3B4
chr12	118454601	118454671	+	5'-UTR,CDS,intron-Distal	3.71913	9.98187	K562	YBX3
chr12	118454519	118454692	+	5'-UTR,CDS,intron-Distal	4.41362	9.77030	K562	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 34 entries

eCLIP assay for RFC5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RFC5 is not available on ENCORE database.
137 RBPs can affect the levels of RFC5.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RFC5 is not available on ENCORE database.

137 RBPs can affect the gene expression of RFC5 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RFC5	ENSG00000111445.9	136.69550	577.92240	-2.07990	53.24230	51.62750	HepG2	ZNF622
RFC5	ENSG00000111445.9	217.58960	796.98640	-1.87290	51.69100	50.23860	HepG2	SRFBP1
RFC5	ENSG00000111445.9	64.20620	434.28590	-2.75790	38.46270	36.43020	HepG2	EIF2S1
RFC5	ENSG00000111445.9	97.10070	525.89690	-2.43720	37.98610	35.94910	HepG2	DDX3X
RFC5	ENSG00000111445.9	93.54270	454.23970	-2.27980	31.51970	29.33260	HepG2	ASCC1
RFC5	ENSG00000111445.9	190.76850	657.07970	-1.78420	30.48100	28.86070	HepG2	BOP1
RFC5	ENSG00000111445.9	164.37520	603.21550	-1.87570	29.55490	27.63190	HepG2	CPSF6
RFC5	ENSG00000111445.9	178.74210	584.72410	-1.70990	27.22220	25.55900	HepG2	RPLP0
RFC5	ENSG00000111445.9	308.74800	735.32120	-1.25190	25.61980	23.91810	HepG2	AUH
RFC5	ENSG00000111445.9	216.51540	612.25390	-1.49970	24.87830	23.01940	HepG2	CALR
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 159 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RFC5 is not available on ENCORE database.

30 RBPs can affect the splicing of RFC5 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	RFC5	ENSG00000111445.9	chr12	+	118455494	118455620	118454505	118454697	118456876	118456941	0.05900	0.00107	included	K562	FTO
SE	RFC5	ENSG00000111445.9	chr12	+	118455494	118455620	118454505	118454697	118456876	118456941	-0.10100	0.00019	excluded	K562	SF3B4
SE	RFC5	ENSG00000111445.9	chr12	+	118455494	118455620	118454505	118454697	118456876	118456941	0.07200	0.00480	included	K562	SMNDC1
SE	RFC5	ENSG00000111445.9	chr12	+	118455494	118455620	118454505	118454697	118456876	118456941	0.05800	0.00207	included	K562	WDR3
SE	RFC5	ENSG00000111445.9	chr12	+	118455494	118455858	118454526	118454697	118456876	118456941	0.08900	0.00000	included	K562	AQR
SE	RFC5	ENSG00000111445.9	chr12	+	118455494	118455620	118454505	118454697	118456876	118456941	-0.09500	0.00032	excluded	K562	FXR1
SE	RFC5	ENSG00000111445.9	chr12	+	118455494	118455620	118454505	118454697	118456876	118456941	-0.05700	0.00001	excluded	K562	APOBEC3C
SE	RFC5	ENSG00000111445.9	chr12	+	118455494	118455620	118454505	118454697	118456876	118456941	0.11300	0.00201	included	HepG2	RBM15
SE	RFC5	ENSG00000111445.9	chr12	+	118455494	118455620	118454505	118454697	118456876	118456941	0.12500	0.00151	included	HepG2	RBFOX2
SE	RFC5	ENSG00000111445.9	chr12	+	118455494	118455620	118454505	118454697	118456876	118456941	-0.08500	0.00000	excluded	K562	HNRNPU

Showing 1 to 10 of 53 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RFC5

General Information

Functions

Localization

Domains (AlphaFold: RFC5)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RFC5 is not avaliable on ENCORE database.

17 proteins are bound to RFC5 RNA:

eCLIP assay for RFC5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RFC5 is not available on ENCORE database.

137 RBPs can affect the gene expression of RFC5 :

The Knockdown/knockout RNA-Seq assay for RFC5 is not available on ENCORE database.

30 RBPs can affect the splicing of RFC5 :

The Knockdown/knockout RNA-Seq assay for RFC5 is not avaliable on ENCORE database.