C4orf27

General Information

Gene Name       : C4orf27
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C4orf27)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C4orf27 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C4orf27 RNA is bound by 4 proteins.  







eCLIP assay for C4orf27 is not avaliable on ENCORE database.





4 proteins are bound to C4orf27 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr4170650671170650739-3'-UTR,CDS,intron-Distal4.974067.80881K562PUM2
chr4170650644170650754-3'-UTR,CDS,intron-Distal5.083716.09426HepG2SUB1
chr4170678980170679046-5'-UTR,CDS,intron-Distal3.806117.37356K562DDX3X
chr4170674934170674986-CDS,intron-Distal3.236224.62864K562ZNF622
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C4orf27 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C4orf27 is not available on ENCORE database.

  • 68 RBPs can affect the levels of C4orf27.  








The Knockdown/knockout RNA-Seq assay for C4orf27 is not available on ENCORE database.





68 RBPs can affect the gene expression of C4orf27 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C4orf27ENSG00000056050.6392.21450253.725400.628303.178102.61270HepG2AKAP1
C4orf27ENSG00000056050.6173.87220240.39720-0.467402.294201.65910HepG2AUH
C4orf27ENSG00000056050.6187.04850301.10560-0.686903.885203.18830HepG2BOP1
C4orf27ENSG00000056050.6151.9995081.375000.901302.985902.18780HepG2CNOT7
C4orf27ENSG00000056050.6191.66730313.91040-0.711702.794101.81020HepG2DDX59
C4orf27ENSG00000056050.689.85520208.74870-1.216106.492505.57760HepG2DDX6
C4orf27ENSG00000056050.6120.75440174.72280-0.533002.143401.51660HepG2DNAJC21
C4orf27ENSG00000056050.6119.12700173.19200-0.539902.450101.83040HepG2DNAJC2
C4orf27ENSG00000056050.663.74140200.73160-1.6550010.499109.38970HepG2EIF2S1
C4orf27ENSG00000056050.6156.19290221.85930-0.506301.853201.32610HepG2EIF4A3
C4orf27ENSG00000056050.6130.49230215.95910-0.726802.626201.95460HepG2EIF4B
C4orf27ENSG00000056050.6207.87770276.00450-0.409001.933001.41090HepG2ETF1
C4orf27ENSG00000056050.6125.62000207.61750-0.724903.007002.31450HepG2G3BP1
C4orf27ENSG00000056050.6186.14170313.36760-0.751504.017103.25840HepG2GPKOW
C4orf27ENSG00000056050.6137.07140232.92280-0.764904.601803.70500HepG2HNRNPF
C4orf27ENSG00000056050.6208.00050299.05180-0.523802.321601.73930HepG2HNRNPLL
C4orf27ENSG00000056050.6125.84070229.36440-0.866005.074804.12240HepG2IGF2BP1
C4orf27ENSG00000056050.6141.10830211.05410-0.580802.246001.63030HepG2IGF2BP2
C4orf27ENSG00000056050.6227.53560348.96880-0.617003.027302.15550HepG2LARP4
C4orf27ENSG00000056050.6124.96170205.25570-0.715903.064402.30680HepG2PABPC4
C4orf27ENSG00000056050.6312.85560176.877000.822704.115102.64330HepG2PRPF6
C4orf27ENSG00000056050.6174.95450270.50550-0.628703.749202.97410HepG2PUM2
C4orf27ENSG00000056050.6166.81440250.88470-0.588802.667601.99390HepG2RPLP0
C4orf27ENSG00000056050.6157.2007081.598100.945903.678002.75580HepG2RPS3A
C4orf27ENSG00000056050.6284.59300176.607300.688302.869401.31510HepG2RTF1
C4orf27ENSG00000056050.6206.99870329.35780-0.670002.764601.98400HepG2SNRNP70
C4orf27ENSG00000056050.6309.11290212.319000.541802.859002.38040HepG2SRSF1
C4orf27ENSG00000056050.6177.98600251.76300-0.500302.817402.18570HepG2SRSF5
C4orf27ENSG00000056050.6162.58520228.83190-0.493102.285001.64810HepG2SRSF7
C4orf27ENSG00000056050.699.94210172.71940-0.789304.231503.57630HepG2SRSF9
C4orf27ENSG00000056050.694.72450181.59590-0.938903.598102.84220HepG2SUPV3L1
C4orf27ENSG00000056050.6179.72850291.46200-0.697503.797402.96350HepG2TARDBP
C4orf27ENSG00000056050.6128.79300189.38170-0.556202.308701.84340HepG2TIAL1
C4orf27ENSG00000056050.6101.52810191.09070-0.912405.748604.98940HepG2TRIM56
C4orf27ENSG00000056050.6171.56340249.10080-0.538002.056301.31410HepG2TUFM
C4orf27ENSG00000056050.6290.46060193.219400.588002.848502.21150HepG2U2AF1
C4orf27ENSG00000056050.6167.39810263.64240-0.655302.762001.92670HepG2UBE2L3
C4orf27ENSG00000056050.6143.55550208.86400-0.541002.658201.97100HepG2UPF1
C4orf27ENSG00000056050.679.52110229.71110-1.5304014.8861013.86810HepG2ZNF622
C4orf27ENSG00000056050.61599.530901129.263400.502208.721107.78840K562AGGF1
C4orf27ENSG00000056050.6756.644401082.42230-0.516604.336803.63400K562AQR
C4orf27ENSG00000056050.61463.070601232.897200.246802.233801.42180K562ATP5C1
C4orf27ENSG00000056050.61146.383101624.34030-0.502802.551801.53900K562CNOT7
C4orf27ENSG00000056050.6831.669301018.03650-0.291702.051001.36680K562CPSF6
C4orf27ENSG00000056050.6433.89340576.08980-0.409002.736401.69980K562DDX3X
C4orf27ENSG00000056050.61517.410801264.460400.263002.572601.73260K562DKC1
C4orf27ENSG00000056050.6345.83090490.14430-0.503103.066602.10340K562EFTUD2
C4orf27ENSG00000056050.6461.99900632.81380-0.453904.242402.71850K562EIF2S1
C4orf27ENSG00000056050.6365.59000524.83440-0.521602.924901.85900K562EIF3D
C4orf27ENSG00000056050.6353.70890601.88240-0.766907.605806.24750K562EIF4A3
C4orf27ENSG00000056050.6413.58020542.03810-0.390202.848601.67250K562EIF4B
C4orf27ENSG00000056050.61166.76550710.003000.716505.961704.83670K562G3BP2
C4orf27ENSG00000056050.6757.81070971.94880-0.359002.676101.89380K562GPKOW
C4orf27ENSG00000056050.6568.107901073.83540-0.9185013.8290012.11920K562GRSF1
C4orf27ENSG00000056050.6586.99210772.58850-0.396402.287801.73740K562HNRNPC
C4orf27ENSG00000056050.61197.38940852.107000.490702.757601.82980K562HNRNPM
C4orf27ENSG00000056050.61928.423101404.832800.456903.074102.23740K562HSPD1
C4orf27ENSG00000056050.61700.013501247.032200.446903.329002.41500K562KIF1C
C4orf27ENSG00000056050.6593.49360811.38200-0.451103.965202.95250K562MAGOH
C4orf27ENSG00000056050.6748.70420948.74130-0.341602.483201.65790K562METAP2
C4orf27ENSG00000056050.6574.82070879.12360-0.613008.933807.55970K562MTPAP
C4orf27ENSG00000056050.6546.97310721.98530-0.400502.775901.79460K562PCBP2
C4orf27ENSG00000056050.62017.000801648.480700.291002.373701.39180K562PUM1
C4orf27ENSG00000056050.61780.539501165.354000.611406.901306.08870K562PUS1
C4orf27ENSG00000056050.61577.813401135.435900.474606.538805.65250K562RBM15
C4orf27ENSG00000056050.6583.08220756.03990-0.374802.569201.76150K562RBM22
C4orf27ENSG00000056050.6592.35280777.35540-0.392102.188201.30740K562RPS3
C4orf27ENSG00000056050.6741.90710487.708000.605103.750102.18200K562RRP9
C4orf27ENSG00000056050.6775.77550963.80340-0.313102.758601.94470K562SF3A3
C4orf27ENSG00000056050.6719.30540987.42810-0.457103.959602.86040K562SRPK2
C4orf27ENSG00000056050.6572.76070750.46310-0.389802.714601.67850K562SRSF4
C4orf27ENSG00000056050.6331.92320461.85570-0.476602.412401.46760K562SUPV3L1
C4orf27ENSG00000056050.6678.69030545.498600.315102.114501.39530K562SYNCRIP
C4orf27ENSG00000056050.6571.94460782.14580-0.451603.288202.51540K562TARDBP
C4orf27ENSG00000056050.6578.74140754.44840-0.382502.559801.77630K562TIA1
C4orf27ENSG00000056050.6786.474101035.77350-0.397204.954204.02330K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C4orf27 is not available on ENCORE database.





9 RBPs can affect the splicing of C4orf27 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC4orf27ENSG00000056050.6chr4-170669894170669993170663107170663258170671686170671876-0.276000.000000.00000excludedHepG2U2AF2
SEC4orf27ENSG00000056050.6chr4-170658810170658898170652854170653027170674826170674986-0.062000.000430.00593excludedK562AQR
SEC4orf27ENSG00000056050.6chr4-170669894170669993170663107170663258170671686170671876-0.064000.000170.03093excludedK562HNRNPM
SEC4orf27ENSG00000056050.6chr4-170669894170669993170663107170663258170671686170671876-0.217000.000000.00000excludedK562U2AF2
SEC4orf27ENSG00000056050.6chr4-170669894170669993170663107170663258170671686170671876-0.090000.001620.06408excludedK562HNRNPK
A3SSC4orf27ENSG00000056050.6chr4-1706748261706750051706748261706749861706789801706791040.155000.000000.00005longerK562AQR
MXEC4orf27ENSG00000056050.6chr4-170663107170663258170669894170669993170652854170653027170671686170671876-0.070000.000760.016482includedK562PUS1
MXEC4orf27ENSG00000056050.6chr4-170671686170671876170674826170674986170663107170663258170678980170679104-0.204000.003160.049412includedK562PUS1
MXEC4orf27ENSG00000056050.6chr4-1706588101706588981706748261706750051706528541706530271706789801706791040.069000.000000.000001includedK562AQR
MXEC4orf27ENSG00000056050.6chr4-1706698941706699931706716861706718761706631071706632581706748261706749860.107000.002450.095871includedK562LARP7
MXEC4orf27ENSG00000056050.6chr4-1706698941706699931706716861706718761706631071706632581706748261706749860.114000.000190.027091includedK562ZNF800
MXEC4orf27ENSG00000056050.6chr4-1706698941706699931706716861706718761706631071706632581706748261706749860.174000.000050.003411includedK562DHX30
MXEC4orf27ENSG00000056050.6chr4-170669894170669993170671686170671876170663107170663258170674826170674986-0.155000.001420.076172includedK562SERBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C4orf27 is not avaliable on ENCORE database.