SNAP29

General Information

Gene Name       : SNAP29
Gene ID             : ENSG00000099940.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SNAP29)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNAP29ENSG00000099940.1147.4931.0739.28ENCSR000AEF
HepG2SNAP29ENSG00000099940.1124.7127.5126.11ENCSR985KAT
K562SNAP29ENSG00000099940.11130.64168.44149.54ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNAP29 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNAP29 RNA is bound by 21 proteins.  







eCLIP assay for SNAP29 is not avaliable on ENCORE database.





21 proteins are bound to SNAP29 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr222124257321242639+3'-UTR3.207035.65589K562HNRNPL
chr222124263921242704+3'-UTR5.105689.08942K562HNRNPL
chr222124254321242627+3'-UTR3.356708.11619K562AGGF1
chr222124273121242787+3'-UTR3.547363.58705K562IGF2BP2
chr222124274421242834+3'-UTR4.7564858.71516K562PUM2
chr222124396621244046+3'-UTR3.653698.23977K562IGF2BP1
chr222124264021242707+3'-UTR3.104533.12105HepG2HNRNPL
chr222124265021242723+3'-UTR3.2850310.20313K562AGGF1
chr222124277621242840+3'-UTR3.037386.27118K562HNRNPL
chr222124207121242157+3'-UTR,CDS4.6897210.36303K562PUM1
chr222124282321242869+3'-UTR3.746226.25375K562AGGF1
chr222124255821242638+3'-UTR4.003726.61771HepG2HNRNPL
chr222124461421244662+3'-UTR3.089834.09267K562FAM120A
chr222124216021242260+3'-UTR3.5976112.16453K562PUM2
chr222124341521243555+3'-UTR4.1695010.26427K562FAM120A
chr222124277921242823+3'-UTR4.3574111.88856K562AGGF1
chr222124359021243755+3'-UTR3.704987.57209K562FAM120A
chr222121338121213412+5'-UTR,CDS5.070065.51215K562RBM15
chr222122462421224722+5'-UTR,CDS,intron-Proximal3.165255.63156K562ZNF800
chr222121336921213381+5'-UTR4.050024.51666K562RBM15
chr222122462221224670+5'-UTR,CDS,intron-Proximal3.138844.74199K562PUM1
chr222121335821213415+5'-UTR,CDS3.558489.00124K562ZNF622
chr222122463221224710+5'-UTR,CDS3.127626.82241K562GRWD1
chr222121329921213360+5'-UTR3.354895.26712K562DDX3X
chr222122462321224720+5'-UTR,CDS,intron-Proximal3.193825.01555K562MTPAP
chr222121337421213529+5'-UTR,CDS3.060094.68160K562ZNF800
chr222121336021213412+5'-UTR,CDS4.2996410.11483K562DDX3X
chr222122462321224632+5'-UTR,CDS,intron-Proximal3.078915.49645K562GRWD1
chr222122466021224778+5'-UTR,CDS3.5150414.22579K562UCHL5
chr222121358621213637+CDS,intron-Proximal4.384473.88823K562FMR1
chr222123539821235411+CDS3.224967.86167K562YBX3
chr222121345921213586+CDS3.436015.20807K562FMR1
chr222121348121213533+CDS3.477883.68346K562PUM1
chr222123534421235421+CDS3.188176.88002K562PUM1
chr222121363421213643+CDS,intron-Proximal3.600736.69182K562AQR
chr222122473321224783+CDS5.7361847.15060K562LIN28B
chr222121353921213578+CDS5.045383.73688K562GEMIN5
chr222123542121235464+CDS,intron-Proximal5.0608611.12698K562AQR
chr222121346921213514+CDS5.129067.23707K562RBM15
chr222123775821237803+CDS,intron-Proximal3.399825.53232K562PUM1
chr222122467621224713+CDS4.331379.87549K562LIN28B
chr222122471421224732+CDS6.8155334.44029K562LIN28B
chr222121344821213481+CDS3.081103.26004K562PUM1
chr222122119721221288+intron-Distal3.407423.68431K562TARDBP
chr222122862221228695+intron-Distal4.5657410.10490K562AGGF1
chr222122857921228690+intron-Distal3.470634.48570K562HNRNPL
chr222122875321228804+intron-Distal3.779173.14791K562HNRNPL
chr222122875121228803+intron-Distal4.060906.59866K562AGGF1
chr222123547621235548+intron-Distal,intron-Proximal3.416113.04392K562AQR
chr222122869521228751+intron-Distal5.6439711.04892K562AGGF1
chr222123546421235476+intron-Proximal4.395793.11721K562AQR
chr222122482521224888+intron-Proximal3.699634.41130K562AQR
chr222122482521224918+intron-Proximal4.430289.12083K562PRPF8
chr222121367121213677+intron-Proximal5.7119210.48996K562AQR
chr222121364321213671+intron-Proximal5.7119210.48996K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNAP29 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNAP29 is not available on ENCORE database.

  • 65 RBPs can affect the levels of SNAP29.  








The Knockdown/knockout RNA-Seq assay for SNAP29 is not available on ENCORE database.





65 RBPs can affect the gene expression of SNAP29 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNAP29ENSG00000099940.71340.226401028.310500.382103.221202.58170HepG2BOP1
SNAP29ENSG00000099940.7984.09260774.410100.345602.763801.99200HepG2CALR
SNAP29ENSG00000099940.71025.37600687.904400.575805.173904.13480HepG2CIRBP
SNAP29ENSG00000099940.7656.55400944.06310-0.524004.290903.45230HepG2CPSF6
SNAP29ENSG00000099940.7897.75910631.076000.508406.873105.94650HepG2CELF1
SNAP29ENSG00000099940.7689.05140457.777200.589905.080404.18980HepG2DDX21
SNAP29ENSG00000099940.71095.50470860.307100.348602.559301.31000HepG2DDX47
SNAP29ENSG00000099940.71117.23390876.355900.350202.056001.38710HepG2FIP1L1
SNAP29ENSG00000099940.7783.939801070.21850-0.449103.010402.34640HepG2GPKOW
SNAP29ENSG00000099940.7553.08570724.77730-0.390002.378201.72840HepG2HNRNPK
SNAP29ENSG00000099940.7626.87140514.743000.284202.506101.80450HepG2ILF2
SNAP29ENSG00000099940.71568.279401129.513300.473403.071002.19300HepG2LARP4
SNAP29ENSG00000099940.7621.87510498.781300.318102.369901.58080HepG2PARN
SNAP29ENSG00000099940.7556.71270743.12550-0.416704.169203.52770HepG2PTBP1
SNAP29ENSG00000099940.7614.50330804.80220-0.389203.214002.54770HepG2QKI
SNAP29ENSG00000099940.7894.39860518.722400.785904.592403.69640HepG2RAVER1
SNAP29ENSG00000099940.7400.85910708.77250-0.8222011.1564010.26710HepG2RBM22
SNAP29ENSG00000099940.7682.99280827.01920-0.276102.048601.56800HepG2NELFE
SNAP29ENSG00000099940.7555.02700770.27090-0.472804.938304.14540HepG2RECQL
SNAP29ENSG00000099940.71085.21150841.472700.366902.697502.02100HepG2RPLP0
SNAP29ENSG00000099940.7717.07590509.533200.492802.412301.52970HepG2RPS10
SNAP29ENSG00000099940.7648.82820456.627100.506704.027503.30010HepG2RPS19
SNAP29ENSG00000099940.7644.73740471.676200.450802.545201.77640HepG2RPS2
SNAP29ENSG00000099940.7644.42800450.638700.515902.784601.98290HepG2RPS3A
SNAP29ENSG00000099940.7269.21980564.32750-1.067708.082405.58830HepG2RTF1
SNAP29ENSG00000099940.7609.73820458.292200.411802.549901.64590HepG2SERBP1
SNAP29ENSG00000099940.7826.63950634.138800.382403.876203.15690HepG2SRSF5
SNAP29ENSG00000099940.7837.44480695.022300.268802.198301.72830HepG2SSB
SNAP29ENSG00000099940.7476.18220725.88040-0.608206.947906.12830HepG2TAF15
SNAP29ENSG00000099940.7520.99260666.96390-0.356302.491101.69510HepG2TIA1
SNAP29ENSG00000099940.7649.91460489.596300.408603.228802.69540HepG2TIAL1
SNAP29ENSG00000099940.7333.71160520.84150-0.642203.431701.80290HepG2TRA2A
SNAP29ENSG00000099940.71353.24240749.821200.851709.710308.51970HepG2U2AF1
SNAP29ENSG00000099940.71222.62050675.470300.855902.416101.50200HepG2U2AF2
SNAP29ENSG00000099940.7616.09150756.94110-0.297002.453201.88180HepG2UTP3
SNAP29ENSG00000099940.71240.18100862.272300.5242010.101709.22130HepG2ZNF622
SNAP29ENSG00000099940.73673.167404165.23800-0.181402.331101.80260K562AGGF1
SNAP29ENSG00000099940.73180.485004334.06960-0.446505.625604.67670K562AKAP8L
SNAP29ENSG00000099940.73716.067304917.05030-0.404004.857903.14570K562APOBEC3C
SNAP29ENSG00000099940.72581.020402053.260800.329902.679101.64680K562CCAR1
SNAP29ENSG00000099940.74170.001904977.84830-0.255502.859701.65820K562CCDC124
SNAP29ENSG00000099940.74376.612505372.17460-0.295703.309802.45010K562CPSF6
SNAP29ENSG00000099940.78446.314106851.376400.301804.236303.02040K562CELF1
SNAP29ENSG00000099940.78417.423205828.707800.5301016.5130015.04190K562DDX47
SNAP29ENSG00000099940.73097.915902298.693300.430404.182102.48630K562DHX30
SNAP29ENSG00000099940.73448.013002088.492800.723205.576004.11270K562EIF3A
SNAP29ENSG00000099940.72562.623102105.748300.283203.485302.59780K562EIF3G
SNAP29ENSG00000099940.74864.116405572.42020-0.196102.190701.35000K562EIF4G2
SNAP29ENSG00000099940.76398.977804786.463300.418804.868203.72050K562FIP1L1
SNAP29ENSG00000099940.72978.118301857.403300.6810012.6315011.43440K562FXR1
SNAP29ENSG00000099940.73869.679703245.273500.253802.412501.85000K562HNRNPC
SNAP29ENSG00000099940.75406.937103936.822900.457704.269003.09700K562HNRNPM
SNAP29ENSG00000099940.78558.874706489.584500.399204.415303.41620K562HSPD1
SNAP29ENSG00000099940.73754.778604599.70400-0.292802.257601.52220K562KIF1C
SNAP29ENSG00000099940.72686.991103611.72880-0.426703.002302.07620K562NAA15
SNAP29ENSG00000099940.76614.320504733.770700.482504.997703.87980K562PCBP3
SNAP29ENSG00000099940.75172.147303630.846300.510409.163107.73860K562POLR2G
SNAP29ENSG00000099940.78528.275006079.974400.488106.634805.37010K562PUF60
SNAP29ENSG00000099940.72298.173704298.56110-0.9034017.6019016.27190K562PUS1
SNAP29ENSG00000099940.73461.977704188.00740-0.274703.532002.87540K562RBM15
SNAP29ENSG00000099940.72894.066002311.272300.324302.577001.52670K562NELFE
SNAP29ENSG00000099940.73259.671802146.165900.602906.317705.07290K562RPS19
SNAP29ENSG00000099940.73668.803402459.522700.576807.263905.54710K562RPS3
SNAP29ENSG00000099940.72920.342802154.260300.438802.903401.54490K562RRP9
SNAP29ENSG00000099940.74069.099203235.539600.330603.560602.32700K562SAFB
SNAP29ENSG00000099940.72144.445001822.139500.234902.063001.32670K562SF3B4
SNAP29ENSG00000099940.73981.425704998.47370-0.328208.368006.83800K562SRPK2
SNAP29ENSG00000099940.73211.817702245.450700.516307.983206.78940K562SRSF1
SNAP29ENSG00000099940.74294.003603641.995400.237502.403501.63850K562SYNCRIP
SNAP29ENSG00000099940.72185.398501754.220500.317003.382702.49740K562U2AF2
SNAP29ENSG00000099940.75356.539404664.982900.199303.120802.22380K562WDR43
SNAP29ENSG00000099940.74100.512804929.79000-0.265702.380901.58910K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNAP29 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SNAP29 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SNAP29 is not avaliable on ENCORE database.