TM7SF3

General Information

Gene Name       : TM7SF3
Gene ID             : ENSG00000064115.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TM7SF3)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TM7SF3ENSG00000064115.1079.2264.0871.65ENCSR000AEF
HepG2TM7SF3ENSG00000064115.1064.4270.9767.69ENCSR985KAT
K562TM7SF3ENSG00000064115.1026.8034.6130.70ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TM7SF3 is not avaliable on ENCORE database.



Proteins bound to RNA

  • TM7SF3 RNA is bound by 13 proteins.  







eCLIP assay for TM7SF3 is not avaliable on ENCORE database.





13 proteins are bound to TM7SF3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr122714810727148196-3'-UTR,CDS,intron-Distal,intron-Proximal4.813424.96013K562PRPF8
chr122714816727148273-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.153764.61799HepG2BCLAF1
chr122712622427126274-3'-UTR,intron-Distal3.469805.04705HepG2FAM120A
chr122713352527133612-3'-UTR,CDS,intron-Distal,intron-Proximal4.206665.60471HepG2U2AF2
chr122712618327126224-3'-UTR,intron-Distal4.802543.75888HepG2FAM120A
chr122714816927148246-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.007523.41665HepG2GRWD1
chr122714966927149731-3'-UTR,CDS,intron-Distal,intron-Proximal3.927553.82000HepG2GRWD1
chr122712661627126671-3'-UTR,intron-Distal3.909613.08128K562IGF2BP1
chr122715251627152610-3'-UTR,CDS,intron-Distal,intron-Proximal4.450864.00727K562IGF2BP2
chr122712855727128635-3'-UTR,CDS,intron-Distal,intron-Proximal4.019435.63851K562SF3B4
chr122715252427152610-3'-UTR,CDS,intron-Distal,intron-Proximal3.609213.61668HepG2IGF2BP1
chr122712618927126274-3'-UTR,intron-Distal3.567284.91593K562FAM120A
chr122712636127126424-3'-UTR,intron-Distal3.485543.38753K562FAM120A
chr122714813827148229-3'-UTR,CDS,intron-Distal,intron-Proximal4.4323813.40522HepG2PRPF8
chr122716701527167092-5'-UTR,CDS,intron-Distal5.6097642.55685HepG2DDX3X
chr122716709227167136-5'-UTR,CDS,intron-Distal6.1077732.71679HepG2DDX3X
chr122716709227167137-5'-UTR,CDS,intron-Distal4.678714.32207K562DDX3X
chr122716719627167227-5'-UTR,intron-Distal,intron-Proximal4.5604922.66486HepG2DDX3X
chr122716713627167196-5'-UTR,intron-Distal,intron-Proximal5.2226458.85677HepG2DDX3X
chr122716722727167288-5'-UTR,intron-Distal,intron-Proximal3.398143.28035HepG2NCBP2
chr122716713727167196-5'-UTR,intron-Distal,intron-Proximal3.864115.68852HepG2RPS3
chr122716720527167293-5'-UTR,intron-Distal,intron-Proximal3.971197.37356K562DDX3X
chr122716722727167281-5'-UTR,intron-Distal,intron-Proximal4.7124337.10806HepG2DDX3X
chr122712705227127107-CDS,intron-Distal,intron-Proximal3.087083.58705K562IGF2BP2
chr122712699427127150-CDS,intron-Distal,intron-Proximal4.554715.09622HepG2IGF2BP1
chr122713269827132780-CDS,intron-Distal,intron-Proximal3.047643.04298HepG2HNRNPM
chr122713731627137371-intron-Distal3.012953.21744HepG2HNRNPC
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TM7SF3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TM7SF3 is not available on ENCORE database.

  • 93 RBPs can affect the levels of TM7SF3.  








The Knockdown/knockout RNA-Seq assay for TM7SF3 is not available on ENCORE database.





93 RBPs can affect the gene expression of TM7SF3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TM7SF3ENSG00000064115.62016.509701325.008500.605807.949506.24110HepG2AATF
TM7SF3ENSG00000064115.62325.977601721.099400.434403.790402.69710HepG2ABCF1
TM7SF3ENSG00000064115.62312.727001611.833100.5208012.6786011.57820HepG2ACO1
TM7SF3ENSG00000064115.63635.586801985.914600.8723011.6258010.60870HepG2AKAP1
TM7SF3ENSG00000064115.61773.033101132.249500.646906.548904.99110HepG2AKAP8
TM7SF3ENSG00000064115.62487.910401619.418800.6194015.6637014.04960HepG2AKAP8L
TM7SF3ENSG00000064115.6901.763001618.01670-0.843409.961808.39120HepG2BCLAF1
TM7SF3ENSG00000064115.61644.451501288.285800.352103.009902.38870HepG2BOP1
TM7SF3ENSG00000064115.63467.508502253.653700.621505.558404.15360HepG2CCAR1
TM7SF3ENSG00000064115.62012.696201561.146400.366402.898102.10670HepG2CIRBP
TM7SF3ENSG00000064115.61861.089701611.498300.207602.531001.88930HepG2CKAP4
TM7SF3ENSG00000064115.61644.735701209.671400.443102.247701.56310HepG2CNOT7
TM7SF3ENSG00000064115.61525.587801182.745900.367102.981402.27110HepG2CPSF6
TM7SF3ENSG00000064115.62240.946401150.252500.9621018.1250015.80630HepG2CSTF2
TM7SF3ENSG00000064115.61732.244302177.59360-0.330104.449603.66890HepG2CELF1
TM7SF3ENSG00000064115.62893.971501462.926700.9841021.2569019.60990HepG2DDX21
TM7SF3ENSG00000064115.61289.769801781.99260-0.466404.971803.67790HepG2DHX30
TM7SF3ENSG00000064115.61401.231301847.62260-0.399005.612804.64100HepG2DNAJC21
TM7SF3ENSG00000064115.61175.955501831.14500-0.6389018.1394016.60790HepG2DNAJC2
TM7SF3ENSG00000064115.6335.388601571.00560-2.2278057.3009054.95540HepG2EIF2S1
TM7SF3ENSG00000064115.62644.643002309.985300.195102.121201.37190HepG2EIF4G1
TM7SF3ENSG00000064115.6397.652901184.71220-1.5750010.826708.85690HepG2FTO
TM7SF3ENSG00000064115.62418.444301751.584300.465304.291703.44380HepG2FXR1
TM7SF3ENSG00000064115.61063.111801624.94140-0.612105.823804.87270HepG2G3BP1
TM7SF3ENSG00000064115.61377.188201007.054300.451503.804802.73790HepG2GEMIN5
TM7SF3ENSG00000064115.6814.248601340.81490-0.719607.200306.19910HepG2GPKOW
TM7SF3ENSG00000064115.61383.005001865.32150-0.431604.497203.69970HepG2HNRNPA1
TM7SF3ENSG00000064115.62487.916702151.869300.209202.174501.33590HepG2HNRNPA2B1
TM7SF3ENSG00000064115.61814.560502132.91230-0.233203.419002.67780HepG2HNRNPL
TM7SF3ENSG00000064115.6946.213101279.55710-0.435403.354902.66860HepG2HNRNPLL
TM7SF3ENSG00000064115.6994.267002061.05820-1.0517032.3972030.52390HepG2HNRNPU
TM7SF3ENSG00000064115.62391.777001651.749400.534005.521004.59720HepG2IGF2BP2
TM7SF3ENSG00000064115.61400.162302105.31200-0.5884017.6465015.97600HepG2ILF2
TM7SF3ENSG00000064115.62210.881301643.379900.427904.262402.75240HepG2LIN28B
TM7SF3ENSG00000064115.63922.647701762.029701.1545020.4888018.90340HepG2MATR3
TM7SF3ENSG00000064115.61716.007001406.658200.286702.337901.59090HepG2MSI2
TM7SF3ENSG00000064115.61359.908801803.55810-0.407302.974802.31960HepG2NCBP2
TM7SF3ENSG00000064115.61107.983801415.24050-0.353102.832501.39680HepG2NIP7
TM7SF3ENSG00000064115.61758.407802321.79990-0.401005.516004.44540HepG2NOL12
TM7SF3ENSG00000064115.6610.886601134.51380-0.8931011.7791010.33570HepG2NSUN2
TM7SF3ENSG00000064115.6555.626601105.56680-0.992607.444105.93680HepG2PABPC1
TM7SF3ENSG00000064115.6848.397901606.29010-0.9209012.5144011.00920HepG2PABPC4
TM7SF3ENSG00000064115.6898.536401656.59030-0.8826013.7794012.58930HepG2PCBP1
TM7SF3ENSG00000064115.6968.247101501.72390-0.633205.529403.23350HepG2PHF6
TM7SF3ENSG00000064115.61073.257901838.30870-0.7764017.9750016.21070HepG2PPIL4
TM7SF3ENSG00000064115.62642.640101745.226500.598504.089202.62220HepG2PRPF6
TM7SF3ENSG00000064115.61876.362101412.441900.409603.506302.60670HepG2PRPF8
TM7SF3ENSG00000064115.61264.485802351.03540-0.8947021.7189019.95470HepG2PUM2
TM7SF3ENSG00000064115.62055.676801641.758800.324305.142804.35010HepG2PUS1
TM7SF3ENSG00000064115.6700.719401602.14150-1.1931010.517909.20850HepG2RAVER1
TM7SF3ENSG00000064115.63459.746702560.201200.434307.860307.09080HepG2RBM22
TM7SF3ENSG00000064115.61070.685201656.85810-0.629907.115906.07530HepG2RBM25
TM7SF3ENSG00000064115.61979.398001532.633500.368902.982101.88080HepG2RCC2
TM7SF3ENSG00000064115.63467.508202620.838500.403804.123103.31590HepG2RPLP0
TM7SF3ENSG00000064115.61665.622401100.521600.597808.269507.27360HepG2RPS19
TM7SF3ENSG00000064115.61703.640001214.469200.488203.185402.32820HepG2RPS3A
TM7SF3ENSG00000064115.61850.703301397.216200.405403.062002.24110HepG2RRP9
TM7SF3ENSG00000064115.62469.010001742.832000.502403.047401.44470HepG2RTF1
TM7SF3ENSG00000064115.62539.296901476.214000.782407.878906.70040HepG2SF3A3
TM7SF3ENSG00000064115.6750.339601266.55510-0.755308.126906.97650HepG2SF3B1
TM7SF3ENSG00000064115.62140.597201755.051600.286403.163802.53670HepG2SF3B4
TM7SF3ENSG00000064115.61412.514202125.11950-0.5893016.2070014.76740HepG2SLBP
TM7SF3ENSG00000064115.62574.921002891.63100-0.167401.859801.42400HepG2SRFBP1
TM7SF3ENSG00000064115.64330.598301831.816001.2412073.3613071.68900HepG2SRSF1
TM7SF3ENSG00000064115.63068.582302188.315800.4877011.141909.99920HepG2SRSF5
TM7SF3ENSG00000064115.62006.191502390.11740-0.252603.537902.76440HepG2SRSF7
TM7SF3ENSG00000064115.61045.224801490.21280-0.511705.959005.20470HepG2SRSF9
TM7SF3ENSG00000064115.62013.867601228.306700.713207.662705.68020HepG2SSRP1
TM7SF3ENSG00000064115.63221.769302488.727100.372308.350507.36790HepG2SUCLG1
TM7SF3ENSG00000064115.62858.908101646.291400.7961021.4312020.07770HepG2TAF15
TM7SF3ENSG00000064115.6869.271601221.59610-0.490903.949602.78340HepG2TFIP11
TM7SF3ENSG00000064115.63760.880802002.905400.9089025.9025024.66290HepG2TIAL1
TM7SF3ENSG00000064115.61359.299102020.59280-0.5719013.2588012.15620HepG2TRIM56
TM7SF3ENSG00000064115.6830.366501486.73420-0.8403011.6460010.32790HepG2U2AF1
TM7SF3ENSG00000064115.61701.832502291.89390-0.429503.389202.46200HepG2UBE2L3
TM7SF3ENSG00000064115.6613.195201076.64860-0.812109.232507.84580HepG2UCHL5
TM7SF3ENSG00000064115.62153.356401309.176700.717807.603606.54000HepG2UPF1
TM7SF3ENSG00000064115.61614.992901263.957800.353504.881904.12400HepG2UTP3
TM7SF3ENSG00000064115.62994.427601761.848400.765106.935605.32230HepG2XRCC6
TM7SF3ENSG00000064115.61256.477901794.05620-0.513804.463903.55060HepG2XRN2
TM7SF3ENSG00000064115.61243.065601439.84300-0.212002.390101.87070HepG2ZNF622
TM7SF3ENSG00000064115.6834.321701140.03050-0.450403.825303.15760K562AQR
TM7SF3ENSG00000064115.6470.55760653.42450-0.473604.948803.30680K562EIF2S1
TM7SF3ENSG00000064115.61122.45360854.956200.392604.499603.60900K562EIF2S2
TM7SF3ENSG00000064115.61615.041301298.174200.315003.511402.45470K562EIF4G2
TM7SF3ENSG00000064115.6357.02100883.88280-1.3078028.8108026.22890K562HNRNPU
TM7SF3ENSG00000064115.61441.03880982.281400.552805.813504.67380K562HSPD1
TM7SF3ENSG00000064115.6491.83060660.77570-0.426003.948302.99600K562MTPAP
TM7SF3ENSG00000064115.6339.90810549.40930-0.692705.502604.16560K562PSIP1
TM7SF3ENSG00000064115.6463.13830799.24320-0.7872010.570709.33110K562PTBP1
TM7SF3ENSG00000064115.6550.10040766.47620-0.478503.866502.86130K562RBM22
TM7SF3ENSG00000064115.6399.51560557.25650-0.480102.565001.59070K562SUPV3L1
TM7SF3ENSG00000064115.6447.51950793.00110-0.825409.223007.82730K562TARDBP
TM7SF3ENSG00000064115.6422.09870589.70110-0.482402.852701.81540K562UCHL5
TM7SF3ENSG00000064115.6525.60270666.09410-0.341802.245901.45870K562WDR3
TM7SF3ENSG00000064115.61076.620301350.59230-0.327102.753001.46780K562WRN
TM7SF3ENSG00000064115.61012.229601284.34810-0.343502.811601.94000K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TM7SF3 is not available on ENCORE database.





28 RBPs can affect the splicing of TM7SF3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETM7SF3ENSG00000064115.6chr12-271291922712929027128509271285912713271627132869-0.077000.000100.09289excludedHepG2IGF2BP1
SETM7SF3ENSG00000064115.6chr12-271284282712859127126127271271602713349827133564-0.108000.000030.00100excludedHepG2U2AF1
SETM7SF3ENSG00000064115.6chr12-271357052713579227133498271335792714338227143560-0.094000.000060.00177excludedHepG2U2AF1
SETM7SF3ENSG00000064115.6chr12-271524582715260927149674271497952716701027167144-0.134000.000380.00902excludedHepG2U2AF1
SETM7SF3ENSG00000064115.6chr12-271284282712859127126127271271602714816927148341-0.131000.000040.00232excludedK562AKAP8L
SETM7SF3ENSG00000064115.6chr12-271284282712859127126127271271602713349827133579-0.055000.003930.04371excludedHepG2U2AF2
SETM7SF3ENSG00000064115.6chr12-271327422713286927129192271292902713349827133564-0.158000.001260.06845excludedHepG2AKAP1
SETM7SF3ENSG00000064115.6chr12-271357052713579227133498271335792714338227143560-0.065000.001820.02019excludedK562AQR
SETM7SF3ENSG00000064115.6chr12-2713642527136529271357052713579227143382271435600.054000.000000.00000includedHepG2SRSF7
SETM7SF3ENSG00000064115.6chr12-271327162713286927129192271292902713349827133579-0.232000.000000.00002excludedHepG2SRSF7
SETM7SF3ENSG00000064115.6chr12-271327162713286927129192271292902713349827133579-0.159000.000020.00342excludedHepG2DDX3X
SETM7SF3ENSG00000064115.6chr12-271291922712929027128488271285912713349827133541-0.170000.000130.04372excludedHepG2BCLAF1
SETM7SF3ENSG00000064115.6chr12-271284282712859127126127271271602714816927148341-0.140000.000010.00033excludedK562PUS1
SETM7SF3ENSG00000064115.6chr12-271524582715260927149674271497952716701027167144-0.205000.000000.00013excludedK562PUS1
SETM7SF3ENSG00000064115.6chr12-2713642527136529271357052713579227143382271435600.100000.000250.04983includedK562MTPAP
SETM7SF3ENSG00000064115.6chr12-271327162713286927129192271292902713349827133579-0.131000.000700.04388excludedHepG2NCBP2
SETM7SF3ENSG00000064115.6chr12-2713271627132869271291922712929027133498271335790.084000.000500.02946includedHepG2PTBP1
SETM7SF3ENSG00000064115.6chr12-271327162713286927129192271292902713349827133579-0.236000.000000.00046excludedHepG2HNRNPA1
SETM7SF3ENSG00000064115.6chr12-271561682715632327152458271526092716701027167317-0.159000.000580.01444excludedK562U2AF1
SETM7SF3ENSG00000064115.6chr12-271327162713286927129192271292902713349827133579-0.247000.000000.00016excludedHepG2PCBP2
SETM7SF3ENSG00000064115.6chr12-271291922712929027128509271285912713349827133541-0.159000.000020.00645excludedHepG2LARP4
SETM7SF3ENSG00000064115.6chr12-271561682715632327152458271526092716701027167317-0.071000.000130.01380excludedHepG2HNRNPL
SETM7SF3ENSG00000064115.6chr12-271327162713286927129192271292902713349827133579-0.117000.000470.04862excludedHepG2SUPV3L1
SETM7SF3ENSG00000064115.6chr12-271291922712929027128488271285912713349827133541-0.155000.001330.05987excludedHepG2PCBP1
SETM7SF3ENSG00000064115.6chr12-271327162713286927128428271285912713349827133579-0.173000.000200.05773excludedHepG2NOL12
SETM7SF3ENSG00000064115.6chr12-271284282712859127126127271271602714816927148341-0.091000.001980.05673excludedK562UTP18
SETM7SF3ENSG00000064115.6chr12-271524582715260927149674271497952716701027167144-0.129000.001340.04257excludedK562UTP18
SETM7SF3ENSG00000064115.6chr12-271561682715632327152458271526092716701027167317-0.172000.000720.01515excludedK562U2AF2
SETM7SF3ENSG00000064115.6chr12-271291922712929027128488271285912713271627132869-0.242000.000050.00318excludedK562HNRNPU
SETM7SF3ENSG00000064115.6chr12-271284282712859127126127271271602714816927148341-0.085000.002340.05181excludedK562RBM15
SETM7SF3ENSG00000064115.6chr12-271284282712859127126127271271602714816927148341-0.103000.000420.01386excludedK562AGGF1
SETM7SF3ENSG00000064115.6chr12-271327162713286927128428271285912713349827133579-0.234000.000260.08164excludedHepG2XRN2
SETM7SF3ENSG00000064115.6chr12-271291922712929027128509271285912713271627132869-0.097000.000780.03541excludedHepG2HNRNPU
SETM7SF3ENSG00000064115.6chr12-2713642527136529271357052713579227143382271435600.061000.001510.05526includedK562PTBP1
A3SSTM7SF3ENSG00000064115.6chr12-2713271627132894271327162713286927133498271335790.098000.000850.00603longerK562AQR
A3SSTM7SF3ENSG00000064115.6chr12-2715245827152699271524582715260927156168271563230.052000.000510.08732longerHepG2PRPF8
MXETM7SF3ENSG00000064115.6chr12-2712842827128591271291922712929027126127271271602713271627132869-0.123000.000380.009602includedHepG2U2AF1
MXETM7SF3ENSG00000064115.6chr12-2712919227129290271334982713356427128428271285912713570527135792-0.056000.000710.022292includedHepG2MATR3
MXETM7SF3ENSG00000064115.6chr12-2713349827133579271433822714356027126127271271602714816927148341-0.075000.004220.061082includedK562PUS1
MXETM7SF3ENSG00000064115.6chr12-2712919227129290271433822714356027126127271271602714816927148341-0.091000.000470.008672includedK562U2AF2
MXETM7SF3ENSG00000064115.6chr12-27128428271285912712919227129290271261272712716027132716271328690.168000.000430.033031includedK562LARP7
MXETM7SF3ENSG00000064115.6chr12-2713349827133579271433822714356027129194271292902714816927148341-0.194000.000000.000062includedHepG2U2AF2
MXETM7SF3ENSG00000064115.6chr12-27129192271292902713349827133564271284282712859127135705271357920.105000.000150.015671includedHepG2LARP4
MXETM7SF3ENSG00000064115.6chr12-2713642527136529271433822714356027135705271357922714816927148341-0.058000.004000.069622includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TM7SF3 is not avaliable on ENCORE database.