EDA

General Information

Gene Name : EDA
Gene ID : ENSG00000158813.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: EDA)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	EDA	ENSG00000158813.17	0.00	0.00	0.00	ENCSR000AEF
HepG2	EDA	ENSG00000158813.17	9.83	12.24	11.04	ENCSR985KAT
K562	EDA	ENSG00000158813.17	0.13	0.09	0.11	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for EDA is not avaliable on ENCORE database.

Proteins bound to RNA

EDA RNA is bound by 20 proteins.

eCLIP assay for EDA is not avaliable on ENCORE database.

20 proteins are bound to EDA RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	69255796	69255907	+	3'-UTR	4.95214	6.20043	HepG2	UPF1
chrX	69256874	69256957	+	3'-UTR	4.52931	5.93974	HepG2	UPF1
chrX	68836141	68836269	+	5'-UTR,CDS	3.73901	3.38100	HepG2	DDX3X
chrX	68836516	68836585	+	CDS,intron-Proximal	4.20613	4.97430	HepG2	SRSF1
chrX	68892401	68892414	+	intron-Distal	3.48675	48.20932	K562	RPS11
chrX	69000978	69001028	+	intron-Distal	3.05737	3.02632	HepG2	ILF3
chrX	68949268	68949364	+	intron-Distal	3.35763	3.17661	HepG2	HNRNPL
chrX	68949278	68949325	+	intron-Distal	3.83334	3.09122	HepG2	PTBP1
chrX	68892378	68892401	+	intron-Distal	3.52855	50.24792	K562	RPS11
chrX	68941025	68941090	+	intron-Distal	4.29357	5.28337	HepG2	HNRNPM
chrX	68965871	68965982	+	intron-Distal	4.15748	3.84109	HepG2	PCBP2
chrX	69001099	69001172	+	intron-Distal	4.15488	3.98468	HepG2	ILF3
chrX	68866003	68866050	+	intron-Distal	4.12098	3.96879	HepG2	MATR3
chrX	68941666	68941750	+	intron-Distal	3.94758	4.61905	HepG2	MATR3
chrX	69126010	69126081	+	intron-Distal	3.93956	3.16986	HepG2	QKI
chrX	68937294	68937353	+	intron-Distal	4.52141	5.16513	HepG2	HNRNPM
chrX	68854148	68854219	+	intron-Distal	3.18200	3.63132	HepG2	HNRNPC
chrX	68965892	68965950	+	intron-Distal	3.20182	3.59395	HepG2	PTBP1
chrX	69192798	69192937	+	intron-Distal	3.89562	6.41317	HepG2	QKI
chrX	68892365	68892379	+	intron-Distal	5.35637	42.04475	HepG2	DDX55
chrX	68937796	68937919	+	intron-Distal	3.14382	5.36060	HepG2	SUGP2
chrX	68940948	68941025	+	intron-Distal	4.61866	20.90805	HepG2	HNRNPM
chrX	68891310	68891397	+	intron-Distal	4.40653	5.58061	HepG2	SUGP2
chrX	68852676	68852800	+	intron-Distal	3.59240	7.32475	HepG2	PTBP1
chrX	68892367	68892377	+	intron-Distal	4.47245	27.33233	HepG2	DDX52
chrX	68892379	68892402	+	intron-Distal	4.36108	37.62825	HepG2	DDX55
chrX	68961231	68961297	+	intron-Distal	4.33540	4.66737	HepG2	MATR3
chrX	68867756	68867829	+	intron-Distal	3.52597	3.59523	HepG2	SUGP2
chrX	68886173	68886233	+	intron-Distal	3.03119	4.01262	HepG2	HNRNPM
chrX	68891027	68891095	+	intron-Distal	5.07329	7.78465	HepG2	HNRNPM
chrX	68891095	68891128	+	intron-Distal	3.95519	3.07980	HepG2	HNRNPM
chrX	68891130	68891207	+	intron-Distal	3.37354	3.23296	HepG2	SUGP2
chrX	68847114	68847193	+	intron-Distal	3.40495	5.80375	HepG2	PTBP1
chrX	68965963	68966044	+	intron-Distal	4.14523	3.27829	HepG2	MATR3
chrX	68940943	68941006	+	intron-Distal	4.37440	7.77845	HepG2	MATR3
chrX	69069295	69069391	+	intron-Distal	4.68227	5.85495	HepG2	QKI
chrX	68868846	68868912	+	intron-Distal	3.75738	4.25134	HepG2	RBFOX2
chrX	68849612	68849659	+	intron-Distal	3.09159	3.46325	HepG2	SUGP2
chrX	68891266	68891311	+	intron-Distal	3.96295	5.37814	HepG2	HNRNPM
chrX	68940942	68941107	+	intron-Distal	4.68818	10.58275	HepG2	SUGP2
chrX	68867511	68867582	+	intron-Distal	4.89261	7.15419	HepG2	MATR3
chrX	68987182	68987252	+	intron-Distal	4.65395	3.77881	HepG2	PCBP2
chrX	68971659	68971722	+	intron-Distal	4.57812	4.87593	HepG2	MATR3
chrX	68962664	68962717	+	intron-Distal	3.81810	4.28420	HepG2	HNRNPM
chrX	68958042	68958138	+	intron-Distal	3.80021	5.61842	HepG2	MATR3
chrX	68960571	68960617	+	intron-Distal	3.91552	3.27829	HepG2	MATR3
chrX	68892366	68892415	+	intron-Distal	5.02574	400.00000	K562	EIF3G
chrX	68892365	68892378	+	intron-Distal	3.48286	45.34498	HepG2	TBRG4
chrX	68849562	68849642	+	intron-Distal	3.83334	3.09122	HepG2	PTBP1
chrX	68943807	68943863	+	intron-Distal	5.09646	7.51573	HepG2	HNRNPM
chrX	68974809	68974890	+	intron-Distal	4.27076	4.05620	HepG2	MATR3
chrX	68894674	68894723	+	intron-Distal	3.69504	5.09669	HepG2	QKI
chrX	68837215	68837346	+	intron-Distal	4.11001	3.14375	HepG2	RBFOX2
chrX	68849081	68849139	+	intron-Distal	3.20115	3.10883	HepG2	SUGP2
chrX	68890835	68890890	+	intron-Distal	4.11167	3.27829	HepG2	MATR3
chrX	68891206	68891264	+	intron-Distal	4.62305	5.42395	HepG2	HNRNPM
chrX	68864731	68864802	+	intron-Distal	3.43970	3.39827	HepG2	MATR3
chrX	68865060	68865112	+	intron-Distal	4.68238	6.08412	HepG2	HNRNPM
chrX	68892358	68892366	+	intron-Distal	3.34518	5.85856	K562	EIF3G
chrX	68864741	68864821	+	intron-Distal	4.51186	5.42395	HepG2	HNRNPM
chrX	68941335	68941374	+	intron-Distal	4.15661	3.27946	HepG2	HNRNPM
chrX	68892370	68892378	+	intron-Distal	3.78376	56.28274	K562	RPS11
chrX	68891145	68891204	+	intron-Distal	4.85588	6.45442	HepG2	HNRNPM
chrX	68960713	68960749	+	intron-Distal	3.86896	3.24322	HepG2	MATR3
chrX	68933351	68933399	+	intron-Distal	4.28212	10.95022	HepG2	PCBP2
chrX	68879591	68879672	+	intron-Distal	4.23114	6.13941	HepG2	DDX59
chrX	68867379	68867443	+	intron-Distal	4.53254	5.42507	HepG2	MATR3
chrX	68940864	68940901	+	intron-Distal	4.71697	5.68226	HepG2	HNRNPM
chrX	68892377	68892382	+	intron-Distal	4.70761	27.95849	HepG2	DDX52
chrX	68937786	68937864	+	intron-Distal	4.17444	4.05620	HepG2	MATR3
chrX	68884658	68884706	+	intron-Distal	4.77711	5.42395	HepG2	HNRNPM
chrX	68941395	68941443	+	intron-Distal	3.33263	3.11000	HepG2	HNRNPM
chrX	68941390	68941466	+	intron-Distal	4.64154	3.85055	HepG2	XPO5
chrX	68890846	68890896	+	intron-Distal	3.77489	4.38996	HepG2	HNRNPM
chrX	68965950	68966065	+	intron-Distal	6.29942	21.75278	HepG2	PTBP1
chrX	68852800	68852875	+	intron-Distal	3.59859	4.56984	HepG2	PTBP1
chrX	68959639	68959696	+	intron-Distal	4.41670	4.51074	HepG2	HNRNPL
chrX	68849091	68849171	+	intron-Distal	4.66869	5.97584	HepG2	MATR3
chrX	68892353	68892365	+	intron-Distal	4.09754	3.90569	HepG2	DDX55
chrX	68943343	68943525	+	intron-Distal	5.52743	9.03229	HepG2	QKI
chrX	68867759	68867810	+	intron-Distal	3.82850	5.39941	HepG2	MATR3
chrX	68852531	68852615	+	intron-Distal	4.51128	5.54528	HepG2	QKI
chrX	68886724	68886789	+	intron-Distal	3.98241	3.60235	HepG2	HNRNPM
chrX	68852697	68852858	+	intron-Distal	4.71918	10.11929	HepG2	MATR3
chrX	68943940	68943998	+	intron-Distal	4.70480	6.19745	HepG2	HNRNPM
chrX	68961224	68961302	+	intron-Distal	3.45807	4.60009	HepG2	SUGP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for EDA is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for EDA is not available on ENCORE database.
96 RBPs can affect the levels of EDA.

The Knockdown/knockout RNA-Seq assay for EDA is not available on ENCORE database.

96 RBPs can affect the gene expression of EDA :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
EDA	ENSG00000158813.13	841.59160	539.71520	0.64080	6.37070	4.81390	HepG2	AATF
EDA	ENSG00000158813.13	1313.43170	632.51380	1.05410	31.76370	30.24260	HepG2	ACO1
EDA	ENSG00000158813.13	492.68240	667.68400	-0.43850	2.89450	1.87520	HepG2	ADAR
EDA	ENSG00000158813.13	1415.66430	931.56030	0.60370	4.97270	4.28600	HepG2	AKAP1
EDA	ENSG00000158813.13	897.67950	635.51480	0.49820	6.30960	5.19610	HepG2	AKAP8L
EDA	ENSG00000158813.13	1884.91190	934.19730	1.01260	32.92910	31.02890	HepG2	AUH
EDA	ENSG00000158813.13	1166.11620	878.03450	0.40930	2.29440	1.41490	HepG2	CCAR1
EDA	ENSG00000158813.13	568.56530	732.30480	-0.36510	2.06240	1.38770	HepG2	CIRBP
EDA	ENSG00000158813.13	424.97330	632.41150	-0.57350	7.07160	6.09870	HepG2	CKAP4
EDA	ENSG00000158813.13	380.72780	583.00710	-0.61480	3.57310	2.80210	HepG2	CPSF6
EDA	ENSG00000158813.13	506.35760	684.70190	-0.43530	3.88700	2.67520	HepG2	YBX3
EDA	ENSG00000158813.13	634.96140	413.11870	0.62000	4.91110	3.53230	HepG2	CSTF2
EDA	ENSG00000158813.13	1085.63900	886.39870	0.29240	2.53590	1.91550	HepG2	CELF1
EDA	ENSG00000158813.13	1142.14970	953.07320	0.26100	2.79090	2.04590	HepG2	DAZAP1
EDA	ENSG00000158813.13	384.44300	595.39800	-0.63110	5.34300	4.43270	HepG2	DDX21
EDA	ENSG00000158813.13	389.04200	582.70200	-0.58280	4.95160	3.72090	HepG2	DDX24
EDA	ENSG00000158813.13	1118.33140	892.37510	0.32550	1.94660	1.41330	HepG2	DDX3X
EDA	ENSG00000158813.13	1119.43090	662.04080	0.75770	4.06700	2.89400	HepG2	DDX59
EDA	ENSG00000158813.13	380.21120	598.18100	-0.65380	5.31810	3.96010	HepG2	DDX5
EDA	ENSG00000158813.13	1795.70740	766.54320	1.22800	19.07120	17.64540	HepG2	DDX6
EDA	ENSG00000158813.13	474.38570	648.45710	-0.45100	3.26690	2.20560	HepG2	DHX30
EDA	ENSG00000158813.13	281.51590	605.15340	-1.10410	17.69700	16.31940	HepG2	DKC1
EDA	ENSG00000158813.13	473.79460	666.38980	-0.49210	5.84600	4.95040	HepG2	DNAJC2
EDA	ENSG00000158813.13	432.84700	607.11070	-0.48810	2.97740	2.02290	HepG2	EEF2
EDA	ENSG00000158813.13	866.84180	548.32430	0.66060	4.87790	3.40470	HepG2	AGO1
EDA	ENSG00000158813.13	936.14680	736.92180	0.34510	1.96150	1.45270	HepG2	EIF2S1
EDA	ENSG00000158813.13	381.51510	562.29680	-0.55960	4.72130	3.35360	HepG2	EIF3G
EDA	ENSG00000158813.13	501.96270	814.39750	-0.69820	5.61460	4.70480	HepG2	EIF4A3
EDA	ENSG00000158813.13	352.58500	792.90690	-1.16920	11.02290	9.69560	HepG2	EIF4B
EDA	ENSG00000158813.13	367.69990	614.89110	-0.74180	6.98110	5.34210	HepG2	ESF1
EDA	ENSG00000158813.13	710.12910	1072.59700	-0.59500	9.38920	8.38960	HepG2	ETF1
EDA	ENSG00000158813.13	370.23180	494.66390	-0.41800	2.45320	1.71290	HepG2	FUBP3
EDA	ENSG00000158813.13	1049.25080	725.79290	0.53160	3.17350	1.97660	HepG2	FUS
EDA	ENSG00000158813.13	566.81690	809.17500	-0.51360	3.78990	2.73740	HepG2	G3BP2
EDA	ENSG00000158813.13	854.45100	598.62630	0.51320	3.09950	2.01980	HepG2	GNB2L1
EDA	ENSG00000158813.13	371.09400	660.93920	-0.83270	5.56970	4.68270	HepG2	GPKOW
EDA	ENSG00000158813.13	801.04120	603.89100	0.40750	4.35620	3.14840	HepG2	HDGF
EDA	ENSG00000158813.13	264.66490	678.76570	-1.35870	20.17630	18.70140	HepG2	HNRNPA1
EDA	ENSG00000158813.13	1070.28350	875.91270	0.28900	2.80470	1.86590	HepG2	HNRNPA2B1
EDA	ENSG00000158813.13	216.96840	570.45860	-1.39460	15.21850	12.00790	HepG2	HNRNPAB
EDA	ENSG00000158813.13	368.32540	755.00200	-1.03550	13.18950	11.78240	HepG2	HNRNPC
EDA	ENSG00000158813.13	608.63260	1077.59520	-0.82420	16.20560	14.66080	HepG2	HNRNPF
EDA	ENSG00000158813.13	1030.29540	771.77740	0.41670	3.12540	2.38450	HepG2	HNRNPK
EDA	ENSG00000158813.13	215.65460	630.74140	-1.54830	14.98450	13.68360	HepG2	HNRNPLL
EDA	ENSG00000158813.13	392.50090	750.01030	-0.93420	17.05100	15.64660	HepG2	HNRNPU
EDA	ENSG00000158813.13	579.84730	1061.13150	-0.87190	14.06950	12.56860	HepG2	IGF2BP1
EDA	ENSG00000158813.13	607.55040	774.79280	-0.35080	1.86760	1.30270	HepG2	IGF2BP2
EDA	ENSG00000158813.13	552.48180	766.11060	-0.47160	6.09290	5.04780	HepG2	ILF2
EDA	ENSG00000158813.13	445.78240	673.23450	-0.59480	3.36790	1.89130	HepG2	ILF3
EDA	ENSG00000158813.13	395.24450	658.27680	-0.73590	5.52370	3.75960	HepG2	KHDRBS1
EDA	ENSG00000158813.13	1378.53940	779.29620	0.82280	7.77160	6.00310	HepG2	KHSRP
EDA	ENSG00000158813.13	1969.85170	926.86330	1.08760	14.04800	12.21230	HepG2	LARP4
EDA	ENSG00000158813.13	444.04480	821.94270	-0.88830	9.38770	8.19420	HepG2	MAGOH
EDA	ENSG00000158813.13	386.81190	643.15370	-0.73350	4.04460	2.86160	HepG2	MTPAP
EDA	ENSG00000158813.13	663.15610	487.07910	0.44510	3.16940	1.86740	HepG2	NAA15
EDA	ENSG00000158813.13	1018.95810	603.96880	0.75440	3.92680	2.60840	HepG2	NONO
EDA	ENSG00000158813.13	268.03390	559.23280	-1.06100	8.57320	7.30860	HepG2	NSUN2
EDA	ENSG00000158813.13	282.31140	407.57600	-0.52980	3.55950	2.16170	HepG2	PKM
EDA	ENSG00000158813.13	513.45930	668.94920	-0.38160	3.16720	2.38430	HepG2	PPIL4
EDA	ENSG00000158813.13	453.74410	670.79530	-0.56400	6.44430	5.31870	HepG2	PRPF4
EDA	ENSG00000158813.13	1376.55490	957.68500	0.52330	10.88340	9.87080	HepG2	PUM1
EDA	ENSG00000158813.13	776.59420	956.98090	-0.30130	2.23280	1.62770	HepG2	PUM2
EDA	ENSG00000158813.13	509.00390	644.26150	-0.34000	2.89920	2.27230	HepG2	PUS1
EDA	ENSG00000158813.13	958.05170	769.18000	0.31670	2.31470	1.69280	HepG2	RBM25
EDA	ENSG00000158813.13	414.48690	574.42260	-0.47080	2.70760	1.66070	HepG2	RCC2
EDA	ENSG00000158813.13	690.16480	870.91050	-0.33560	2.91580	2.36260	HepG2	NELFE
EDA	ENSG00000158813.13	661.50590	811.15930	-0.29420	2.32040	1.74910	HepG2	RECQL
EDA	ENSG00000158813.13	812.53920	1160.71640	-0.51450	4.78660	3.92060	HepG2	RPLP0
EDA	ENSG00000158813.13	419.22570	651.27920	-0.63550	3.57890	2.50560	HepG2	RPS10
EDA	ENSG00000158813.13	877.84460	479.55550	0.87220	11.84950	10.68210	HepG2	RPS19
EDA	ENSG00000158813.13	492.30900	652.34830	-0.40610	2.77870	1.97720	HepG2	RPS2
EDA	ENSG00000158813.13	466.05040	693.68300	-0.57380	3.41010	2.52200	HepG2	RPS3A
EDA	ENSG00000158813.13	471.81250	667.91700	-0.50150	5.59930	4.73570	HepG2	SAFB2
EDA	ENSG00000158813.13	407.14270	653.21510	-0.68200	4.73990	3.03050	HepG2	SART3
EDA	ENSG00000158813.13	368.58150	624.34130	-0.76040	4.37910	3.50910	HepG2	SF3B1
EDA	ENSG00000158813.13	661.50490	814.72610	-0.30060	2.41000	1.85240	HepG2	SF3B4
EDA	ENSG00000158813.13	666.23620	865.04150	-0.37670	4.12230	3.28980	HepG2	SLBP
EDA	ENSG00000158813.13	421.06550	675.84800	-0.68270	4.63970	3.36970	HepG2	SMNDC1
EDA	ENSG00000158813.13	339.92340	694.67770	-1.03110	7.69730	6.38780	HepG2	SNRNP70
EDA	ENSG00000158813.13	1322.13830	1012.54730	0.38480	5.44710	4.80890	HepG2	SRFBP1
EDA	ENSG00000158813.13	915.06780	671.70280	0.44600	2.64390	1.66810	HepG2	SRSF3
EDA	ENSG00000158813.13	756.77610	1058.67450	-0.48430	6.28880	5.30760	HepG2	SRSF7
EDA	ENSG00000158813.13	1296.40550	691.86370	0.90590	24.07170	22.74340	HepG2	SRSF9
EDA	ENSG00000158813.13	556.72070	879.12210	-0.65910	10.36090	9.49060	HepG2	SSB
EDA	ENSG00000158813.13	1641.01850	1013.02710	0.69580	17.97170	16.60860	HepG2	SUCLG1
EDA	ENSG00000158813.13	527.82450	764.41430	-0.53430	5.64000	4.88890	HepG2	TAF15
EDA	ENSG00000158813.13	915.74220	728.77270	0.32940	2.66940	2.17650	HepG2	TIAL1
EDA	ENSG00000158813.13	303.65360	735.29010	-1.27590	28.06520	26.50620	HepG2	TRIM56
EDA	ENSG00000158813.13	581.73370	881.37960	-0.59940	6.30090	4.89870	HepG2	TUFM
EDA	ENSG00000158813.13	688.13730	536.15090	0.36000	3.02040	1.93040	HepG2	UTP18
EDA	ENSG00000158813.13	614.62620	503.60010	0.28730	2.10370	1.56720	HepG2	UTP3
EDA	ENSG00000158813.13	384.71130	621.35000	-0.69160	4.52100	3.10670	HepG2	XPO5
EDA	ENSG00000158813.13	267.88360	644.44440	-1.26640	15.38140	13.69620	HepG2	XRN2
EDA	ENSG00000158813.13	865.29470	661.97930	0.38630	4.44050	3.62110	HepG2	ZC3H8
EDA	ENSG00000158813.13	750.05100	573.67800	0.38660	4.23380	3.59540	HepG2	ZNF622
EDA	ENSG00000158813.13	435.67040	662.40850	-0.60450	3.76470	2.23570	HepG2	ZRANB2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

EDA

General Information

Functions

Localization

Domains (AlphaFold: EDA)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for EDA is not avaliable on ENCORE database.

20 proteins are bound to EDA RNA:

eCLIP assay for EDA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for EDA is not available on ENCORE database.

96 RBPs can affect the gene expression of EDA :

The Knockdown/knockout RNA-Seq assay for EDA is not available on ENCORE database.

No RBPs affect the alternative splcing events of EDA on ENCORE database.

The Knockdown/knockout RNA-Seq assay for EDA is not avaliable on ENCORE database.