SCML1

General Information

Gene Name       : SCML1
Gene ID             : ENSG00000047634.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SCML1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SCML1ENSG00000047634.141.501.341.42ENCSR000AEF
HepG2SCML1ENSG00000047634.1440.4461.6751.05ENCSR985KAT
K562SCML1ENSG00000047634.140.010.010.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SCML1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SCML1 RNA is bound by 19 proteins.  







eCLIP assay for SCML1 is not avaliable on ENCORE database.





19 proteins are bound to SCML1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX1776757417767624+3'-UTR,CDS3.3373316.62777HepG2BCLAF1
chrX1777237417772450+3'-UTR3.526315.22258HepG2TIAL1
chrX1776751817767574+3'-UTR,CDS,intron-Proximal3.230929.11678HepG2BCLAF1
chrX1777294217773011+3'-UTR6.4862621.15362HepG2ZC3H11A
chrX1776803217768085+3'-UTR,CDS4.0186012.21730HepG2BCLAF1
chrX1777281517772869+3'-UTR5.6294210.67115HepG2ZC3H11A
chrX1776801217768032+3'-UTR,CDS,intron-Proximal3.241309.86954HepG2BCLAF1
chrX1777286917772942+3'-UTR4.475619.91056HepG2ZC3H11A
chrX1776752317767557+3'-UTR,CDS3.513735.11891HepG2GRWD1
chrX1777276717772815+3'-UTR3.964959.04524HepG2ZC3H11A
chrX1776414817764190+5'-UTR,CDS5.054107.39496HepG2BCLAF1
chrX1776414517764220+5'-UTR,CDS,intron-Proximal3.734636.00907HepG2PPIG
chrX1775563317755723+5'-UTR3.592528.08165HepG2RBM15
chrX1776414717764214+5'-UTR,CDS4.957048.84267HepG2GRWD1
chrX1775585917755920+5'-UTR,intron-Distal,intron-Proximal4.2381111.64735HepG2EFTUD2
chrX1775574317755787+5'-UTR3.482365.22400HepG2DDX3X
chrX1776419017764217+5'-UTR,CDS3.703705.45876HepG2BCLAF1
chrX1775581917755924+5'-UTR,intron-Distal,intron-Proximal3.960977.26173HepG2TIAL1
chrX1775560917755670+5'-UTR4.7971111.71715HepG2NCBP2
chrX1775586217755932+5'-UTR,intron-Distal,intron-Proximal4.2060311.65485HepG2HNRNPM
chrX1776406917764176+5'-UTR,CDS,intron-Proximal3.763817.46684HepG2SF3A3
chrX1775564017755738+5'-UTR4.6027611.21395HepG2DDX3X
chrX1775567017755732+5'-UTR4.7399012.25437HepG2NCBP2
chrX1775593917756006+5'-UTR,intron-Distal4.0454312.87439HepG2HNRNPM
chrX1775604117756079+5'-UTR,intron-Distal4.1463411.67714HepG2HNRNPM
chrX1775574817755836+5'-UTR,intron-Proximal4.0809812.18707HepG2PRPF8
chrX1775607917756126+5'-UTR,intron-Distal,intron-Proximal3.8438511.65485HepG2HNRNPM
chrX1775609417756157+5'-UTR,intron-Distal,intron-Proximal3.879683.48162HepG2TAF15
chrX1776992917769967+CDS,intron-Proximal3.080344.61799HepG2BCLAF1
chrX1776838917768455+CDS,intron-Proximal3.6561416.42675HepG2PRPF8
chrX1776837517768424+CDS,intron-Proximal4.981928.84267HepG2GRWD1
chrX1776830717768382+CDS3.109733.72631HepG2RBM15
chrX1776355217763633+CDS,intron-Distal,intron-Proximal3.1804313.96011HepG2U2AF2
chrX1776361517763656+CDS,intron-Distal3.904324.51739HepG2BCLAF1
chrX1776817017768302+CDS4.4056518.29158HepG2GRWD1
chrX1776990717769952+CDS,intron-Proximal4.662935.60471HepG2U2AF2
chrX1776990317770004+CDS,intron-Proximal3.193514.98322HepG2AQR
chrX1776815317768254+CDS3.3397913.41553HepG2BCLAF1
chrX1776996717770020+CDS3.057443.85381HepG2BCLAF1
chrX1776818117768262+CDS4.412788.37479HepG2ZNF800
chrX1775980317759828+intron-Distal4.897456.95924HepG2HNRNPM
chrX1776381917763907+intron-Distal3.7311419.48261HepG2U2AF2
chrX1775953717759576+intron-Distal4.9896120.86201HepG2HNRNPM
chrX1775630817756359+intron-Distal4.648706.15196HepG2HNRNPM
chrX1776903317769111+intron-Distal3.715453.64762HepG2QKI
chrX1776391017763971+intron-Distal3.625474.31768HepG2KHSRP
chrX1775657717756675+intron-Distal4.8463612.03438HepG2EXOSC5
chrX1775944517759562+intron-Distal5.046858.75433HepG2EXOSC5
chrX1775947517759537+intron-Distal4.1358214.91415HepG2HNRNPM
chrX1775635217756429+intron-Distal7.1582722.20651HepG2EXOSC5
chrX1775644117756488+intron-Distal3.8113610.70082HepG2HNRNPM
chrX1776392217763972+intron-Distal4.1588614.66999HepG2U2AF2
chrX1775901717759069+intron-Distal4.030158.59134HepG2HNRNPM
chrX1775642917756491+intron-Distal3.722637.37276HepG2EXOSC5
chrX1775627717756352+intron-Distal5.9658416.22151HepG2EXOSC5
chrX1775661917756660+intron-Distal3.9164311.78683HepG2HNRNPM
chrX1775669417756752+intron-Distal6.0076812.54258HepG2EXOSC5
chrX1775656017756601+intron-Distal4.5721821.66716HepG2HNRNPM
chrX1775967217759723+intron-Distal3.277116.20329HepG2HNRNPM
chrX1775927317759304+intron-Distal3.632615.12003HepG2HNRNPM
chrX1775620017756231+intron-Distal,intron-Proximal3.304347.42696HepG2HNRNPM
chrX1775957617759640+intron-Distal4.7946622.67716HepG2HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SCML1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SCML1 is not available on ENCORE database.

  • 89 RBPs can affect the levels of SCML1.  








The Knockdown/knockout RNA-Seq assay for SCML1 is not available on ENCORE database.





89 RBPs can affect the gene expression of SCML1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SCML1ENSG00000047634.102146.585201759.505500.286802.287701.31100HepG2AATF
SCML1ENSG00000047634.101822.478502853.07470-0.646607.205905.78440HepG2ABCF1
SCML1ENSG00000047634.101989.601503397.37340-0.771909.204308.29730HepG2AKAP1
SCML1ENSG00000047634.101809.763402179.46310-0.268203.397302.55850HepG2AKAP8L
SCML1ENSG00000047634.102654.384502137.970000.312003.269801.93890HepG2BUD13
SCML1ENSG00000047634.103606.802702731.599900.400905.672104.61990HepG2CALR
SCML1ENSG00000047634.102033.253702670.67310-0.393403.414902.56150HepG2CIRBP
SCML1ENSG00000047634.101633.683102168.79770-0.408808.748807.69520HepG2CKAP4
SCML1ENSG00000047634.102755.849901936.229200.509105.918404.94660HepG2CPSF6
SCML1ENSG00000047634.102811.489902075.521500.437807.382005.73600HepG2YBX3
SCML1ENSG00000047634.104502.065703175.458600.5035011.066709.94860HepG2CELF1
SCML1ENSG00000047634.101498.986102006.26880-0.420508.558607.23590HepG2DDX19B
SCML1ENSG00000047634.103055.644402078.472000.5559011.786909.65420HepG2DDX1
SCML1ENSG00000047634.101579.351501941.16450-0.297602.418001.77940HepG2DDX21
SCML1ENSG00000047634.102294.634301899.664700.272402.455101.59880HepG2DDX24
SCML1ENSG00000047634.102256.694203254.39380-0.528205.445604.59370HepG2DDX3X
SCML1ENSG00000047634.101358.047101992.26480-0.552903.239801.76990HepG2DDX52
SCML1ENSG00000047634.103129.800001850.125200.758309.143907.83180HepG2DDX55
SCML1ENSG00000047634.101671.965402795.66920-0.741608.620807.58960HepG2DDX6
SCML1ENSG00000047634.102699.466001965.704100.457505.395904.05580HepG2DHX30
SCML1ENSG00000047634.101444.324002019.97470-0.4839011.6159010.37930HepG2DNAJC2
SCML1ENSG00000047634.101578.516002377.35280-0.590803.243702.25070HepG2EEF2
SCML1ENSG00000047634.102038.786802969.93030-0.542704.829403.98820HepG2EIF4A3
SCML1ENSG00000047634.104312.721103368.588700.356404.665403.62200HepG2EIF4G1
SCML1ENSG00000047634.101368.146702119.76460-0.631709.830508.28120HepG2EWSR1
SCML1ENSG00000047634.102190.745501539.971500.508404.712103.09000HepG2FKBP4
SCML1ENSG00000047634.102797.612501882.994800.571108.723707.37110HepG2FUBP3
SCML1ENSG00000047634.101713.985802996.64800-0.8060011.9298010.59590HepG2FXR1
SCML1ENSG00000047634.101203.043001718.53810-0.514502.722701.83220HepG2GEMIN5
SCML1ENSG00000047634.103125.038702194.875600.509604.259203.47700HepG2GPKOW
SCML1ENSG00000047634.102509.775302071.035300.277103.928302.77900HepG2HDGF
SCML1ENSG00000047634.101484.866202057.60800-0.470603.596002.87220HepG2HNRNPA1
SCML1ENSG00000047634.104407.803703138.194100.4900011.190009.54240HepG2HNRNPA2B1
SCML1ENSG00000047634.101887.076402288.67130-0.278402.236101.60580HepG2HNRNPC
SCML1ENSG00000047634.104771.886502094.609401.1878028.0223026.36670HepG2HNRNPLL
SCML1ENSG00000047634.101606.285901988.05320-0.307602.626301.69760HepG2HNRNPM
SCML1ENSG00000047634.101629.523602273.54270-0.4805010.291309.18450HepG2HNRNPU
SCML1ENSG00000047634.103614.535502825.555500.355202.845402.16210HepG2IGF2BP2
SCML1ENSG00000047634.101830.631202997.69470-0.711509.104507.92710HepG2MAGOH
SCML1ENSG00000047634.101829.089903014.45410-0.720808.340207.29520HepG2MATR3
SCML1ENSG00000047634.103620.807002332.143100.6346011.5340010.00160HepG2MSI2
SCML1ENSG00000047634.103971.684102136.209800.894604.379003.14310HepG2MTPAP
SCML1ENSG00000047634.102342.414403085.44650-0.397503.182702.50590HepG2NCBP2
SCML1ENSG00000047634.102386.095401839.005500.375603.972402.25580HepG2NIP7
SCML1ENSG00000047634.102933.688701857.265400.659409.531808.20320HepG2NSUN2
SCML1ENSG00000047634.102562.813301861.689500.461002.246301.46080HepG2PABPC1
SCML1ENSG00000047634.102631.606502250.464700.225602.697801.85930HepG2PARN
SCML1ENSG00000047634.101683.016502610.98440-0.6335017.1316015.82740HepG2PCBP1
SCML1ENSG00000047634.10978.644101596.08770-0.705704.710103.11960HepG2PKM
SCML1ENSG00000047634.102389.135601544.645000.6291015.6309014.03500HepG2PRPF4
SCML1ENSG00000047634.10933.295801427.30660-0.612905.875704.74690HepG2PRPF8
SCML1ENSG00000047634.103010.992302656.748300.180502.064201.57900HepG2PTBP1
SCML1ENSG00000047634.102127.403603232.33110-0.6035010.216909.16910HepG2PUF60
SCML1ENSG00000047634.103546.031702209.551900.6824024.8421023.33860HepG2PUS1
SCML1ENSG00000047634.103906.305802877.379300.440907.444406.49410HepG2QKI
SCML1ENSG00000047634.101248.202802690.34310-1.1079039.5860038.07240HepG2RBM22
SCML1ENSG00000047634.104778.265002611.385800.8716019.7451018.05260HepG2RBM25
SCML1ENSG00000047634.102736.552501967.259500.476103.088001.46490HepG2RBM47
SCML1ENSG00000047634.101466.306501991.30530-0.441502.366001.38800HepG2RCC2
SCML1ENSG00000047634.102472.027002956.72740-0.258303.580102.98070HepG2NELFE
SCML1ENSG00000047634.101176.609101741.39070-0.565607.220406.19370HepG2RPLP0
SCML1ENSG00000047634.101007.334001877.86560-0.898606.402605.50910HepG2RPS19
SCML1ENSG00000047634.101179.690602261.76870-0.939008.074806.75230HepG2RPS2
SCML1ENSG00000047634.102155.699603524.14390-0.709106.497405.43890HepG2SF3A3
SCML1ENSG00000047634.102055.044402766.06450-0.428708.563007.61190HepG2SF3B4
SCML1ENSG00000047634.103819.295203098.896700.301505.542704.60750HepG2SLBP
SCML1ENSG00000047634.101960.001002361.19370-0.268704.812704.00250HepG2SMN1
SCML1ENSG00000047634.101756.817402331.73540-0.408402.203101.35850HepG2SMNDC1
SCML1ENSG00000047634.105993.809602306.857601.3774019.6278017.60370HepG2SNRNP70
SCML1ENSG00000047634.102590.157903038.67780-0.230403.250302.72120HepG2SRFBP1
SCML1ENSG00000047634.102416.815202887.15350-0.256503.907703.36970HepG2SRSF1
SCML1ENSG00000047634.102988.197202348.836800.347206.499505.71750HepG2SRSF9
SCML1ENSG00000047634.103130.168702638.351600.246503.805003.22480HepG2SSB
SCML1ENSG00000047634.103420.237902139.332300.676805.293303.63170HepG2SUB1
SCML1ENSG00000047634.101994.242903629.49840-0.8639016.8970015.56750HepG2SUCLG1
SCML1ENSG00000047634.102538.826001841.795600.462903.969803.18190HepG2SUPV3L1
SCML1ENSG00000047634.102042.429702595.03340-0.345504.918204.20450HepG2TAF15
SCML1ENSG00000047634.101628.347102041.57200-0.326302.609601.90240HepG2TARDBP
SCML1ENSG00000047634.103079.652402228.910900.4663010.850509.84320HepG2TRIM56
SCML1ENSG00000047634.101805.415202464.77220-0.449104.259403.48890HepG2U2AF1
SCML1ENSG00000047634.101518.953101088.022100.481304.320603.37110HepG2UCHL5
SCML1ENSG00000047634.102064.512703125.36820-0.5982018.0103016.53230HepG2UPF1
SCML1ENSG00000047634.102322.148203212.50680-0.468204.307203.03380HepG2UTP18
SCML1ENSG00000047634.102051.417203017.43350-0.5567015.3727014.13100HepG2UTP3
SCML1ENSG00000047634.101379.373401813.04510-0.394402.928502.18250HepG2XRN2
SCML1ENSG00000047634.101995.186901524.375900.388206.367305.41760HepG2ZC3H8
SCML1ENSG00000047634.103903.321003437.319000.183302.984602.42330HepG2ZNF622
SCML1ENSG00000047634.109.520000.463004.361702.126701.60010K562AQR
SCML1ENSG00000047634.100.9422010.60610-3.492702.132801.46910K562NSUN2
SCML1ENSG00000047634.100.8383010.46750-3.642302.133001.40990K562SF3A3
SCML1ENSG00000047634.100.0000011.24600-99999.999993.612702.79960K562UPF1
SCML1ENSG00000047634.100.5156010.00760-4.278702.503201.69640K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SCML1 is not available on ENCORE database.





13 RBPs can affect the splicing of SCML1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESCML1ENSG00000047634.10chrX+1776219017762339177555881775580017764134177642180.351000.000010.00047includedHepG2U2AF1
SESCML1ENSG00000047634.10chrX+1776219017762339177555881775580017764134177642180.470000.000000.00000includedHepG2U2AF2
SESCML1ENSG00000047634.10chrX+1776219017762339177555881775580017764134177642180.159000.000000.00019includedHepG2NCBP2
SESCML1ENSG00000047634.10chrX+1776219017762339177555881775580017764134177642180.398000.000280.07194includedHepG2EFTUD2
SESCML1ENSG00000047634.10chrX+1776219017762339177555881775580017764134177642180.199000.000000.00002includedHepG2MATR3
SESCML1ENSG00000047634.10chrX+1776219017762339177555881775580017764134177642180.441000.000000.00000includedHepG2LARP4
SESCML1ENSG00000047634.10chrX+1776219017762339177555881775580017764134177642180.463000.000000.00000includedHepG2SRSF1
SESCML1ENSG00000047634.10chrX+1776357517763659177556701775580017764137177642180.089000.000470.03826includedHepG2IGF2BP3
SESCML1ENSG00000047634.10chrX+1776219017762339177555881775580017764134177642180.355000.000000.00000includedHepG2SUPV3L1
SESCML1ENSG00000047634.10chrX+1776219017762339177555881775580017764134177642180.307000.000000.00004includedHepG2DDX55
SESCML1ENSG00000047634.10chrX+1776219017762339177555881775580017764134177642180.459000.000070.02525includedHepG2EIF3D
SESCML1ENSG00000047634.10chrX+1776219017762339177555881775580017764134177642180.225000.000340.02670includedHepG2SRSF9
SESCML1ENSG00000047634.10chrX+1776219017762339177555881775580017764134177642180.249000.000110.03188includedHepG2FUS

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SCML1 is not avaliable on ENCORE database.