VPS9D1

General Information

Gene Name       : VPS9D1
Gene ID             : ENSG00000075399.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VPS9D1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VPS9D1ENSG00000075399.130.040.700.37ENCSR000AEF
HepG2VPS9D1ENSG00000075399.135.672.103.88ENCSR985KAT
K562VPS9D1ENSG00000075399.131.960.751.35ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VPS9D1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • VPS9D1 RNA is bound by 16 proteins.  







eCLIP assay for VPS9D1 is not avaliable on ENCORE database.





16 proteins are bound to VPS9D1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr168977887489778926-3'-UTR,CDS,intron-Distal,intron-Proximal3.696279.58474HepG2PPIG
chr168977375189773824-3'-UTR,intron-Distal3.425515.57691HepG2LSM11
chr168977371389773803-3'-UTR,intron-Distal3.545483.52724HepG2PABPN1
chr168977845989778493-3'-UTR,CDS,intron-Distal,intron-Proximal3.793565.24452HepG2PPIG
chr168977831289778372-3'-UTR,CDS,intron-Distal,intron-Proximal3.298736.47139HepG2PPIG
chr168977884889778927-3'-UTR,CDS,intron-Distal,intron-Proximal3.576284.24070HepG2GRWD1
chr168977388789773976-3'-UTR,intron-Distal4.747154.25576HepG2PABPN1
chr168977387989773972-3'-UTR,intron-Distal4.492816.09249HepG2LSM11
chr168977881489778874-3'-UTR,CDS,intron-Distal,intron-Proximal3.334859.76148HepG2PPIG
chr168977773389777809-3'-UTR,CDS,intron-Distal,intron-Proximal4.669566.33775HepG2GRWD1
chr168977830589778359-3'-UTR,CDS,intron-Distal,intron-Proximal3.980303.80193HepG2GRWD1
chr168978727889787330-5'-UTR,intron-Distal,intron-Proximal3.960264.14792HepG2XPO5
chr168977705189777168-CDS,intron-Distal,intron-Proximal5.533457.41664HepG2EFTUD2
chr168977479689774841-CDS,intron-Distal,intron-Proximal3.762457.77750HepG2PRPF8
chr168977435089774416-CDS,intron-Distal4.1428211.31924HepG2SF3A3
chr168977618489776221-CDS,intron-Distal,intron-Proximal4.252176.36347HepG2PPIG
chr168977488589774911-CDS,intron-Distal3.627124.68902HepG2PPIG
chr168977435289774434-CDS,intron-Distal5.211899.77805HepG2SF3B4
chr168977701689777097-CDS,intron-Distal,intron-Proximal4.2241111.30590HepG2PPIG
chr168977482089774840-CDS,intron-Distal,intron-Proximal3.110914.24993HepG2PPIG
chr168977702789777110-CDS,intron-Distal,intron-Proximal3.494494.88141HepG2GRWD1
chr168978722689787269-CDS,intron-Distal5.9923210.81409HepG2XPO5
chr168977738389777407-CDS,intron-Distal3.590124.68902HepG2PPIG
chr168977528689775336-CDS,intron-Distal3.023905.47500HepG2PPIG
chr168977614889776210-CDS,intron-Distal,intron-Proximal4.230267.79098HepG2PRPF8
chr168977535189775423-CDS,intron-Distal,intron-Proximal4.095993.25678HepG2SF3B4
chr168977719789777284-CDS,intron-Distal,intron-Proximal4.0218911.79099HepG2RBFOX2
chr168977713689777169-CDS,intron-Distal,intron-Proximal4.288084.50934HepG2RBFOX2
chr168977430589774365-CDS,intron-Distal3.399404.05213HepG2LSM11
chr168978330589783385-intron-Distal,intron-Proximal4.734467.34038HepG2PRPF4
chr168977558289775610-intron-Distal,intron-Proximal4.601964.35676HepG2PRPF8
chr168978389889783960-intron-Distal3.483663.94360HepG2GTF2F1
chr168978704289787135-intron-Distal3.153664.61952HepG2FAM120A
chr168978331589783428-intron-Distal,intron-Proximal5.3655020.58146HepG2FAM120A
chr168977791689777970-intron-Distal,intron-Proximal4.998737.70650HepG2PRPF8
chr168978377389783841-intron-Distal3.5863310.70688HepG2CSTF2T
chr168977801089778126-intron-Distal,intron-Proximal4.492703.13028HepG2FAM120A
chr168978388789783968-intron-Distal3.859483.15688HepG2HNRNPU
chr168978422489784327-intron-Distal3.124267.63806HepG2CSTF2T
chr168978390289783977-intron-Distal3.714509.53661HepG2FAM120A
chr168978706589787159-intron-Distal3.146895.98681HepG2CSTF2T
chr168978697989787078-intron-Distal5.019425.38815HepG2FKBP4
chr168978376789783829-intron-Distal4.356224.42691HepG2GTF2F1
chr168978697789787037-intron-Distal3.763383.01994HepG2GTF2F1
chr168978331089783400-intron-Distal,intron-Proximal3.440455.08268HepG2RBFOX2
chr168977743489777504-intron-Distal,intron-Proximal4.248423.98315HepG2SF3B4
chr168978703189787144-intron-Distal3.083184.19174HepG2PRPF4
chr168978355789783624-intron-Distal3.782055.52268HepG2RBFOX2
chr168978390589784003-intron-Distal4.4863311.86251HepG2PRPF4
chr168978344689783492-intron-Distal4.418354.97791HepG2RBFOX2
chr168978390489783974-intron-Distal4.7147412.60903HepG2CSTF2T
chr168978475589784834-intron-Distal4.8675321.22607HepG2RBFOX2
chr168978424589784270-intron-Distal3.030804.63569HepG2RBFOX2
chr168978422889784296-intron-Distal3.519928.27026HepG2FAM120A
chr168978697589787039-intron-Distal4.200668.90515HepG2EFTUD2
chr168978377789783838-intron-Distal4.660296.06839HepG2PRPF4
chr168977869189778813-intron-Distal,intron-Proximal3.530449.98343HepG2RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VPS9D1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VPS9D1 is not available on ENCORE database.

  • 137 RBPs can affect the levels of VPS9D1.  








The Knockdown/knockout RNA-Seq assay for VPS9D1 is not available on ENCORE database.





137 RBPs can affect the gene expression of VPS9D1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VPS9D1ENSG00000075399.8755.07250389.482100.955009.393607.81690HepG2ABCF1
VPS9D1ENSG00000075399.8379.18730290.171400.385902.466001.88640HepG2ACO1
VPS9D1ENSG00000075399.8509.48880291.508500.805409.612808.28840HepG2AKAP8L
VPS9D1ENSG00000075399.8491.30180351.502500.483003.007501.54220HepG2ATP5C1
VPS9D1ENSG00000075399.8426.75560203.425401.068803.160302.15860HepG2BCCIP
VPS9D1ENSG00000075399.8428.42600326.181300.393301.955001.44440HepG2BOP1
VPS9D1ENSG00000075399.8440.47060291.826700.593804.241202.73520HepG2BUD13
VPS9D1ENSG00000075399.8538.71980332.288800.697002.515501.59130HepG2CCAR1
VPS9D1ENSG00000075399.8526.32400290.076800.8594011.8904010.70730HepG2CKAP4
VPS9D1ENSG00000075399.8366.82840144.879401.340209.024607.67020HepG2CNOT7
VPS9D1ENSG00000075399.8471.17550299.440400.653904.556503.69270HepG2CPSF6
VPS9D1ENSG00000075399.8219.77200110.562200.991006.567305.00860HepG2YBX3
VPS9D1ENSG00000075399.8372.03700221.527300.747906.522605.61530HepG2CELF1
VPS9D1ENSG00000075399.8316.05060238.190200.407902.378201.68350HepG2DAZAP1
VPS9D1ENSG00000075399.8377.72980268.352500.493103.925302.95250HepG2DDX19B
VPS9D1ENSG00000075399.8168.14940110.719700.602702.411301.33140HepG2DDX1
VPS9D1ENSG00000075399.8312.36910175.948000.828005.112004.21870HepG2DDX21
VPS9D1ENSG00000075399.8627.01480331.534900.919208.423307.38140HepG2DDX3X
VPS9D1ENSG00000075399.8423.68610200.051201.082503.435802.58440HepG2DDX55
VPS9D1ENSG00000075399.8384.60300264.841000.538102.296401.37650HepG2DDX5
VPS9D1ENSG00000075399.8188.57870104.712600.848604.298703.08720HepG2DHX30
VPS9D1ENSG00000075399.8489.01040277.607300.816709.032807.94890HepG2DKC1
VPS9D1ENSG00000075399.8273.25480108.568401.3315011.8904010.51520HepG2DNAJC21
VPS9D1ENSG00000075399.8307.36770107.603101.5141019.7868018.19330HepG2DNAJC2
VPS9D1ENSG00000075399.8487.71500200.918301.279307.908606.43400HepG2EEF2
VPS9D1ENSG00000075399.8460.45000273.776200.749905.193104.39550HepG2EIF2S1
VPS9D1ENSG00000075399.8465.77070295.472300.656505.254403.67070HepG2EIF2S2
VPS9D1ENSG00000075399.8487.67060302.486500.688904.425303.62040HepG2EIF4A3
VPS9D1ENSG00000075399.8622.29160294.643601.078504.426803.56740HepG2EIF4B
VPS9D1ENSG00000075399.8335.94130234.994500.515503.411102.49700HepG2EIF4G1
VPS9D1ENSG00000075399.8337.90760225.108700.585903.348702.45800HepG2EIF4G2
VPS9D1ENSG00000075399.8464.36800337.404500.460702.576601.52100HepG2ESF1
VPS9D1ENSG00000075399.8973.03770537.161400.8570015.0222013.80060HepG2ETF1
VPS9D1ENSG00000075399.8383.27270283.521300.434802.398101.62180HepG2EWSR1
VPS9D1ENSG00000075399.8706.06930393.288000.844106.896105.73810HepG2FIP1L1
VPS9D1ENSG00000075399.8415.14990305.403100.442802.129601.51880HepG2FXR1
VPS9D1ENSG00000075399.8627.05650283.197301.1467012.4235011.06780HepG2G3BP1
VPS9D1ENSG00000075399.8555.04880300.792500.883706.891805.47240HepG2G3BP2
VPS9D1ENSG00000075399.8347.43670145.159601.259006.434405.07000HepG2GEMIN5
VPS9D1ENSG00000075399.8295.81380175.679700.751603.974302.75010HepG2GNB2L1
VPS9D1ENSG00000075399.8807.51650339.406701.2504015.5208014.12310HepG2GPKOW
VPS9D1ENSG00000075399.8217.45500134.140100.696902.718601.61640HepG2GRSF1
VPS9D1ENSG00000075399.8336.59470109.608401.618607.432306.44970HepG2HNRNPA1
VPS9D1ENSG00000075399.8292.33350121.916901.261604.090903.25950HepG2HNRNPC
VPS9D1ENSG00000075399.8426.00770313.782900.441002.758902.04260HepG2HNRNPF
VPS9D1ENSG00000075399.8535.53080323.905000.725303.074102.41490HepG2HNRNPLL
VPS9D1ENSG00000075399.8295.25710121.111001.2855013.5178012.25860HepG2HNRNPU
VPS9D1ENSG00000075399.8626.57060308.981601.0199013.3032011.83880HepG2IGF2BP1
VPS9D1ENSG00000075399.8670.43580287.825201.2198014.7535013.33320HepG2IGF2BP2
VPS9D1ENSG00000075399.8282.50120123.711301.1912012.6259011.18640HepG2ILF2
VPS9D1ENSG00000075399.8248.37810141.263900.814003.689402.13360HepG2ILF3
VPS9D1ENSG00000075399.8257.24810138.177500.896504.947303.29000HepG2KHDRBS1
VPS9D1ENSG00000075399.8398.27310265.233400.586405.211403.82170HepG2KIF1C
VPS9D1ENSG00000075399.8704.04810351.335201.002704.489203.42070HepG2LARP4
VPS9D1ENSG00000075399.8276.51780172.149800.683603.500902.22490HepG2LARP7
VPS9D1ENSG00000075399.8299.55570180.705700.729103.968502.51720HepG2LIN28B
VPS9D1ENSG00000075399.8737.12550305.510701.2706016.1006014.58180HepG2MAGOH
VPS9D1ENSG00000075399.8413.57260307.186900.428901.828201.31020HepG2MATR3
VPS9D1ENSG00000075399.8291.53700170.610100.772902.774901.72100HepG2METAP2
VPS9D1ENSG00000075399.8423.97540318.321600.413402.276501.54040HepG2MSI2
VPS9D1ENSG00000075399.8490.89080330.411700.571002.572801.64290HepG2MTPAP
VPS9D1ENSG00000075399.8642.54560314.395501.0311010.137808.96890HepG2NCBP2
VPS9D1ENSG00000075399.8256.23020155.650000.719003.772502.10360HepG2NIP7
VPS9D1ENSG00000075399.8350.76710236.189300.570502.295301.60080HepG2NOL12
VPS9D1ENSG00000075399.8357.70970156.799301.189807.699205.29420HepG2NOLC1
VPS9D1ENSG00000075399.8399.49160183.910001.119103.014701.87060HepG2NONO
VPS9D1ENSG00000075399.8420.90320287.227200.551203.131002.33640HepG2NSUN2
VPS9D1ENSG00000075399.8212.98800121.821000.805903.005401.34810HepG2PA2G4
VPS9D1ENSG00000075399.8644.55300279.864001.2035014.0715012.47750HepG2PABPC4
VPS9D1ENSG00000075399.8222.98070119.881900.895204.671603.60390HepG2PARN
VPS9D1ENSG00000075399.8317.48030149.301501.088303.814102.60160HepG2PCBP2
VPS9D1ENSG00000075399.8428.30150275.932500.634204.406602.24680HepG2PES1
VPS9D1ENSG00000075399.8251.52170134.847400.899302.817901.57710HepG2PKM
VPS9D1ENSG00000075399.8259.12770108.021701.2622011.5636010.11390HepG2PPIL4
VPS9D1ENSG00000075399.8535.08450299.801600.835709.800308.89460HepG2PTBP1
VPS9D1ENSG00000075399.8682.65780225.465001.5982028.4135026.77530HepG2PUF60
VPS9D1ENSG00000075399.8458.95830239.343000.9392012.7248011.64960HepG2PUM1
VPS9D1ENSG00000075399.8445.33540239.167000.896805.698604.74790HepG2PUM2
VPS9D1ENSG00000075399.8478.01060295.553800.693507.466306.53670HepG2PUS1
VPS9D1ENSG00000075399.8326.95070149.747001.126403.407301.48540HepG2RBM14
VPS9D1ENSG00000075399.8289.81940448.95800-0.631405.419504.75520HepG2RBM22
VPS9D1ENSG00000075399.8441.35070207.590901.088109.063907.25490HepG2RBM27
VPS9D1ENSG00000075399.8315.50030168.573600.904204.685603.29670HepG2RCC2
VPS9D1ENSG00000075399.8561.63840333.652200.751208.033507.19720HepG2NELFE
VPS9D1ENSG00000075399.8424.40990310.748400.449602.976602.34010HepG2RECQL
VPS9D1ENSG00000075399.8353.20590141.646701.318103.959702.83190HepG2RPS10
VPS9D1ENSG00000075399.8352.96400158.705101.153106.533005.63260HepG2RPS19
VPS9D1ENSG00000075399.8421.82510191.443001.139609.782308.35740HepG2RPS2
VPS9D1ENSG00000075399.8394.89310145.603601.4393012.4174010.77690HepG2RPS3A
VPS9D1ENSG00000075399.8308.00410195.433400.656203.179002.02250HepG2RPS5
VPS9D1ENSG00000075399.8217.61290107.856001.012603.693902.96860HepG2SAFB2
VPS9D1ENSG00000075399.8230.65860138.247600.738402.913101.31060HepG2SBDS
VPS9D1ENSG00000075399.8286.15670159.205400.845803.329502.29460HepG2SERBP1
VPS9D1ENSG00000075399.8557.38770312.136000.8364010.006408.98620HepG2SF3B4
VPS9D1ENSG00000075399.8350.14230216.189800.695505.963204.99500HepG2SLBP
VPS9D1ENSG00000075399.8313.87770125.780501.3192015.0673013.74860HepG2SMN1
VPS9D1ENSG00000075399.8309.88300147.508401.070803.167902.13560HepG2SMNDC1
VPS9D1ENSG00000075399.8230.38160325.80080-0.500002.909502.42820HepG2SRSF1
VPS9D1ENSG00000075399.8227.26800345.00180-0.602202.683601.69910HepG2SRSF3
VPS9D1ENSG00000075399.8601.03120222.616201.4328028.2255026.51370HepG2SRSF5
VPS9D1ENSG00000075399.8479.30880308.298800.636505.772804.82700HepG2SRSF7
VPS9D1ENSG00000075399.81049.05170440.222801.2527034.6175033.27180HepG2SSB
VPS9D1ENSG00000075399.8248.71010126.701100.972905.800404.15370HepG2STIP1
VPS9D1ENSG00000075399.8495.98910253.173900.9701013.0604011.87570HepG2SUCLG1
VPS9D1ENSG00000075399.8516.14450199.082601.374306.626105.64920HepG2SUPV3L1
VPS9D1ENSG00000075399.8153.41480292.83820-0.932707.162906.33370HepG2TAF15
VPS9D1ENSG00000075399.8631.26780315.792800.9992011.094209.78850HepG2TARDBP
VPS9D1ENSG00000075399.8586.28240117.690202.3165049.5032047.87980HepG2TIAL1
VPS9D1ENSG00000075399.8323.03920118.733501.4439017.7392016.47220HepG2TRIM56
VPS9D1ENSG00000075399.8454.86940233.157500.964004.347503.28310HepG2UBE2L3
VPS9D1ENSG00000075399.8578.97920431.028400.425603.564502.39250HepG2UTP18
VPS9D1ENSG00000075399.8270.73600404.86310-0.580504.550203.81350HepG2UTP3
VPS9D1ENSG00000075399.8233.08120130.424300.837504.130602.78280HepG2XPO5
VPS9D1ENSG00000075399.8446.78000195.976901.188804.727703.78880HepG2XRN2
VPS9D1ENSG00000075399.8348.41160259.259900.426302.618501.96270HepG2ZC3H8
VPS9D1ENSG00000075399.8756.72420461.201600.7143012.0294011.08900HepG2ZNF622
VPS9D1ENSG00000075399.8116.06180202.86070-0.805603.969803.31260K562AGGF1
VPS9D1ENSG00000075399.899.9103045.686901.128803.501302.52020K562BOP1
VPS9D1ENSG00000075399.8327.17900242.411300.432502.465701.36690K562CCDC124
VPS9D1ENSG00000075399.8130.0266048.580201.420306.677405.45120K562CPSF6
VPS9D1ENSG00000075399.8138.07350227.11410-0.718003.874902.81620K562DKC1
VPS9D1ENSG00000075399.8140.6505035.628201.9809010.793708.88070K562EFTUD2
VPS9D1ENSG00000075399.8138.1572045.854601.591108.964307.78370K562EIF2S2
VPS9D1ENSG00000075399.884.5258039.481801.098103.366102.42340K562FIP1L1
VPS9D1ENSG00000075399.8125.9336049.425601.349205.540204.32020K562FMR1
VPS9D1ENSG00000075399.8139.9991041.891101.740609.085307.33760K562FTO
VPS9D1ENSG00000075399.843.8868089.37200-1.026003.273502.62410K562FXR1
VPS9D1ENSG00000075399.8146.0748046.383601.654908.712407.29620K562GPKOW
VPS9D1ENSG00000075399.8128.9798061.099301.077803.842502.95750K562GRSF1
VPS9D1ENSG00000075399.8231.0094050.028202.2070019.0406017.55210K562HNRNPC
VPS9D1ENSG00000075399.8106.2420053.526300.988903.106902.26600K562HSPD1
VPS9D1ENSG00000075399.8141.02180224.00090-0.667602.044001.34470K562KIF1C
VPS9D1ENSG00000075399.8148.2470045.274901.711109.381107.70370K562METAP2
VPS9D1ENSG00000075399.877.95520175.89280-1.174002.051101.31480K562NAA15
VPS9D1ENSG00000075399.8151.1880070.831401.093803.610102.18320K562PABPC1
VPS9D1ENSG00000075399.8237.1018084.577101.487104.691603.60950K562PCBP3
VPS9D1ENSG00000075399.8199.0157064.866601.6172011.8434010.24240K562POLR2G
VPS9D1ENSG00000075399.874.8402034.670701.110002.532601.81500K562PRPF8
VPS9D1ENSG00000075399.883.7400044.859600.900402.330401.50630K562PSIP1
VPS9D1ENSG00000075399.8113.46520209.30440-0.883403.696303.08150K562PUS1
VPS9D1ENSG00000075399.8108.46680203.96900-0.911104.776804.01780K562RBM15
VPS9D1ENSG00000075399.890.8631040.948301.149803.631702.49640K562RCC2
VPS9D1ENSG00000075399.8232.91710135.272800.783802.593001.34910K562SFPQ
VPS9D1ENSG00000075399.8120.0713055.218501.120604.381203.49560K562SRSF1
VPS9D1ENSG00000075399.891.7719041.009301.162003.223302.07170K562SRSF4
VPS9D1ENSG00000075399.891.7768052.173000.814702.427001.45290K562SRSF5
VPS9D1ENSG00000075399.8151.4967065.739001.204403.881101.93980K562STIP1
VPS9D1ENSG00000075399.835.3388065.07240-0.880802.040401.33490K562SYNCRIP
VPS9D1ENSG00000075399.896.1375055.864600.783102.181401.54860K562TARDBP
VPS9D1ENSG00000075399.8128.8561053.893001.257505.806504.55410K562TIA1
VPS9D1ENSG00000075399.880.8609043.145100.906102.222701.39230K562TIAL1
VPS9D1ENSG00000075399.8148.4450089.299700.733102.910701.60830K562TROVE2
VPS9D1ENSG00000075399.882.1551035.518401.209703.352802.22480K562UCHL5
VPS9D1ENSG00000075399.8267.1157091.800601.5408015.5875014.04550K562UPF1
VPS9D1ENSG00000075399.8163.4544078.550601.057105.605204.33990K562WDR3
VPS9D1ENSG00000075399.874.1865036.181801.035802.540901.39750K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VPS9D1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of VPS9D1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for VPS9D1 is not avaliable on ENCORE database.