SPOPL

General Information

Gene Name : SPOPL
Gene ID : ENSG00000144228.8
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SPOPL)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SPOPL	ENSG00000144228.8	13.80	11.12	12.46	ENCSR000AEF
HepG2	SPOPL	ENSG00000144228.8	11.51	23.51	17.51	ENCSR985KAT
K562	SPOPL	ENSG00000144228.8	2.18	1.84	2.01	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SPOPL is not avaliable on ENCORE database.

Proteins bound to RNA

SPOPL RNA is bound by 21 proteins.

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eCLIP assay for SPOPL is not avaliable on ENCORE database.

21 proteins are bound to SPOPL RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	139259480	139259623	+	5'-UTR	6.36200	77.08256	HepG2	PRPF4
chr2	139259503	139259624	+	5'-UTR	4.17128	23.77987	HepG2	NCBP2
chr2	139259500	139259632	+	5'-UTR	4.60147	21.93610	HepG2	GTF2F1
chr2	139259498	139259594	+	5'-UTR	3.23032	19.26441	HepG2	DDX3X
chr2	139329546	139329629	+	3'-UTR,intron-Distal	6.00813	16.76921	K562	TARDBP
chr2	139259656	139259731	+	5'-UTR,intron-Proximal	3.82517	14.10710	HepG2	PRPF8
chr2	139318373	139318470	+	3'-UTR,CDS,intron-Proximal	4.15955	13.12590	HepG2	BCLAF1
chr2	139259505	139259602	+	5'-UTR	5.86592	11.19348	K562	NCBP2
chr2	139308449	139308518	+	CDS,intron-Proximal	3.65379	10.79618	HepG2	U2AF2
chr2	139329629	139329703	+	3'-UTR,intron-Distal	5.47381	10.75912	K562	TARDBP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 58 entries

eCLIP assay for SPOPL is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SPOPL is not available on ENCORE database.
108 RBPs can affect the levels of SPOPL.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SPOPL is not available on ENCORE database.

108 RBPs can affect the gene expression of SPOPL :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SPOPL	ENSG00000144228.4	3744.70220	1826.21650	1.03590	52.30270	50.75940	HepG2	SSB
SPOPL	ENSG00000144228.4	559.32810	1356.11560	-1.27770	49.42370	46.92400	HepG2	DNAJC2
SPOPL	ENSG00000144228.4	1089.16010	304.31640	1.83950	40.51920	38.38360	K562	PUS1
SPOPL	ENSG00000144228.4	1566.71630	802.13570	0.96570	32.05680	30.24910	HepG2	ZC3H8
SPOPL	ENSG00000144228.4	812.93660	1585.21370	-0.96350	28.85040	27.13570	HepG2	SMN1
SPOPL	ENSG00000144228.4	705.69960	1483.25590	-1.07160	25.50610	24.27560	HepG2	TIAL1
SPOPL	ENSG00000144228.4	4117.88660	1466.11830	1.48980	25.43010	23.32740	HepG2	SF3A3
SPOPL	ENSG00000144228.4	700.04350	294.95360	1.24690	24.89550	23.30420	K562	AGGF1
SPOPL	ENSG00000144228.4	554.30490	1358.80260	-1.29360	24.47970	22.09900	HepG2	ADAR
SPOPL	ENSG00000144228.4	3566.96520	2066.65480	0.78730	22.59950	21.52880	HepG2	SRSF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 122 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SPOPL is not available on ENCORE database.

6 RBPs can affect the splicing of SPOPL :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SPOPL	ENSG00000144228.4	chr2	+	139322509	139322563			139322277	139322420	139326505	139331117	-0.13900	0.00000	0.00000	excluded	HepG2	SF3A3
SE	SPOPL	ENSG00000144228.4	chr2	+	139312008	139312105			139310123	139310251	139316591	139316769	0.15700	0.00000	0.01498	included	HepG2	NIP7
A3SS	SPOPL	ENSG00000144228.4	chr2	+	139308472	139308624			139308543	139308624	139308052	139308174	-0.23000	0.00026	0.07043	shorter	HepG2	HNRNPU
A3SS	SPOPL	ENSG00000144228.4	chr2	+	139308472	139308624			139308543	139308624	139308052	139308174	0.13900	0.00057	0.08306	longer	HepG2	SFPQ
SE	SPOPL	ENSG00000144228.4	chr2	+	139312008	139312105			139310123	139310251	139316591	139316769	0.11500	0.00170	0.09854	included	HepG2	TIAL1
MXE	SPOPL	ENSG00000144228.4	chr2	+	139307726	139307864	139308052	139308174	139259501	139259689	139308543	139308624	0.26300	0.00292	0.01969	1included	HepG2	U2AF2

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SPOPL

General Information

Functions

Localization

Domains (AlphaFold: SPOPL)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SPOPL is not avaliable on ENCORE database.

21 proteins are bound to SPOPL RNA:

eCLIP assay for SPOPL is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SPOPL is not available on ENCORE database.

108 RBPs can affect the gene expression of SPOPL :

The Knockdown/knockout RNA-Seq assay for SPOPL is not available on ENCORE database.

6 RBPs can affect the splicing of SPOPL :

The Knockdown/knockout RNA-Seq assay for SPOPL is not avaliable on ENCORE database.