USP31

General Information

Gene Name       : USP31
Gene ID             : ENSG00000103404.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: USP31)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878USP31ENSG00000103404.142.072.092.08ENCSR000AEF
HepG2USP31ENSG00000103404.149.7911.5910.69ENCSR985KAT
K562USP31ENSG00000103404.141.901.821.86ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for USP31 is not avaliable on ENCORE database.



Proteins bound to RNA
  • USP31 RNA is bound by 26 proteins.  







eCLIP assay for USP31 is not avaliable on ENCORE database.





26 proteins are bound to USP31 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr162307916523079252-3'-UTR,intron-Distal,intron-Proximal4.975337.67146K562TARDBP
chr162307918823079269-3'-UTR,intron-Distal,intron-Proximal3.084845.04426HepG2FUBP3
chr162307399123074043-3'-UTR,intron-Distal3.547214.36355HepG2LIN28B
chr162307733123077436-3'-UTR,intron-Distal4.222354.33846HepG2IGF2BP1
chr162309848923098508-CDS,intron-Distal,intron-Proximal3.113903.55800HepG2BCLAF1
chr162309899923099070-CDS,intron-Distal,intron-Proximal4.132105.93840HepG2PRPF8
chr162309140123091486-CDS,intron-Distal3.815864.93175HepG2GRWD1
chr162308504223085116-CDS,intron-Distal,intron-Proximal4.583535.85983HepG2GRWD1
chr162308343223083512-CDS,intron-Distal3.375815.60389HepG2PPIG
chr162308502423085101-CDS,intron-Distal,intron-Proximal4.023906.08299HepG2PPIG
chr162308337623083515-CDS,intron-Distal3.382745.18023HepG2GRWD1
chr162309127323091399-CDS,intron-Distal3.7830413.37947HepG2GRWD1
chr162315992023159968-CDS,intron-Distal5.0163952.81562HepG2PRPF8
chr162315991523159962-CDS,intron-Distal4.332273.59236HepG2AQR
chr162308519623085257-CDS,intron-Distal,intron-Proximal4.5043710.14692HepG2SF3B4
chr162311369323113793-CDS,intron-Distal,intron-Proximal3.651573.95921HepG2U2AF2
chr162309841223098489-CDS,intron-Distal,intron-Proximal3.819368.66838HepG2BCLAF1
chr162307995523080122-CDS,intron-Distal,intron-Proximal3.589287.59580HepG2IGF2BP1
chr162311936523119448-CDS,intron-Distal,intron-Proximal3.175057.75618HepG2GRWD1
chr162311936223119420-CDS,intron-Distal,intron-Proximal4.252195.47493HepG2BUD13
chr162309904123099089-CDS,intron-Distal,intron-Proximal4.300627.09561HepG2BCLAF1
chr162311932023119401-CDS,intron-Distal,intron-Proximal5.3062624.20385HepG2PRPF8
chr162308072323080864-CDS,intron-Distal4.557885.17013K562RBM15
chr162315996823159990-CDS,intron-Distal5.1191827.85381HepG2PRPF8
chr162309908923099156-CDS,intron-Distal3.424374.34695HepG2BCLAF1
chr162308012923080196-CDS,intron-Distal,intron-Proximal4.776765.59872HepG2IGF2BP1
chr162309122023091297-CDS,intron-Distal,intron-Proximal3.063107.66017HepG2PRPF8
chr162308351123083569-CDS,intron-Distal,intron-Proximal5.069657.50129HepG2SF3A3
chr162310203523102125-CDS,intron-Distal3.504348.99805HepG2BCLAF1
chr162310202223102087-CDS,intron-Distal3.028543.24137HepG2EIF3D
chr162309908423099201-CDS,intron-Distal,intron-Proximal3.466294.10684HepG2AQR
chr162310200523102111-CDS,intron-Distal3.907386.62597HepG2GRWD1
chr162311775623117817-CDS,intron-Distal,intron-Proximal3.252885.97243HepG2U2AF2
chr162307990723079986-CDS,intron-Distal3.454684.18161HepG2RBM15
chr162309131623091399-CDS,intron-Distal3.388637.40344HepG2PPIG
chr162308499923085054-CDS,intron-Distal,intron-Proximal3.283875.50267HepG2PRPF8
chr162314057923140700-intron-Distal4.490485.64178HepG2HNRNPL
chr162315907523159090-intron-Distal4.2333611.67621HepG2ILF3
chr162312606523126130-intron-Distal3.362625.72064HepG2MATR3
chr162313267823132744-intron-Distal4.2231111.94322HepG2HNRNPM
chr162312486423124891-intron-Distal4.138504.03915HepG2SUGP2
chr162312270423122751-intron-Distal3.275935.83578HepG2SUGP2
chr162313203123132073-intron-Distal5.189937.87558HepG2HNRNPM
chr162313275523132778-intron-Distal4.684909.20848HepG2HNRNPM
chr162310443123104475-intron-Distal3.873543.29248HepG2SUGP2
chr162314792823147945-intron-Distal3.126253.26837HepG2HNRNPC
chr162312568823125768-intron-Distal3.1112710.30123HepG2SUGP2
chr162313862123138723-intron-Distal3.504364.53895HepG2ILF3
chr162312459523124673-intron-Distal4.2948511.67285HepG2MATR3
chr162315971623159808-intron-Distal4.2202018.14479HepG2HNRNPL
chr162312457823124646-intron-Distal3.9585012.66433HepG2SUGP2
chr162312196823122034-intron-Distal3.659277.27760HepG2SUGP2
chr162312505423125119-intron-Distal3.666773.93186HepG2MATR3
chr162312050723120569-intron-Distal3.169613.39857HepG2HNRNPM
chr162312287123122944-intron-Distal3.005836.36345HepG2SUGP2
chr162311972623119781-intron-Distal3.955413.95921HepG2U2AF2
chr162312341323123505-intron-Distal5.327929.68057HepG2MATR3
chr162309019423090306-intron-Distal3.624485.04794HepG2KHSRP
chr162312467323124800-intron-Distal5.3576714.74699HepG2MATR3
chr162312603523126069-intron-Distal4.242794.78128HepG2SUGP2
chr162312468423124855-intron-Distal3.843293.06015K562MATR3
chr162308977723089936-intron-Distal4.804455.43487HepG2EXOSC5
chr162313253623132598-intron-Distal5.170897.15660HepG2HNRNPM
chr162311219023112307-intron-Distal4.354873.41738HepG2PTBP1
chr162313277823132795-intron-Distal3.334685.85307HepG2HNRNPM
chr162312464623124716-intron-Distal4.1732711.45832HepG2SUGP2
chr162308822023088320-intron-Distal4.090024.61500HepG2HNRNPM
chr162313259823132678-intron-Distal4.504618.02251HepG2HNRNPM
chr162312062123120684-intron-Distal3.096954.86332HepG2SUGP2
chr162312309223123133-intron-Distal5.003776.88667HepG2SUGP2
chr162312330823123350-intron-Distal5.4053712.10180HepG2SUGP2
chr162314344823143492-intron-Distal3.689934.28420HepG2HNRNPM
chr162315901923159051-intron-Distal3.9370111.36640HepG2ILF3
chr162312178723121882-intron-Distal5.4592511.25274HepG2MATR3
chr162313789223137951-intron-Distal3.084493.25288HepG2HNRNPC
chr162312598323126062-intron-Distal4.1996010.64070HepG2HNRNPM
chr162308958423089635-intron-Distal4.243223.61897HepG2HNRNPC
chr162309607823096152-intron-Distal,intron-Proximal5.495405.58036HepG2EFTUD2
chr162312618823126239-intron-Distal3.707256.25586HepG2SUGP2
chr162313433523134409-intron-Distal3.470054.23286HepG2QKI
chr162313533623135427-intron-Distal4.808325.07733HepG2PTBP1
chr162312166623121724-intron-Distal4.724215.72657HepG2MATR3
chr162314216723142267-intron-Distal3.092613.81193HepG2QKI
chr162313192423131971-intron-Distal3.724214.94624HepG2MATR3
chr162312050023120568-intron-Distal4.290864.51299HepG2SUGP2
chr162314335923143422-intron-Distal3.813895.28337HepG2HNRNPM
chr162312287723122945-intron-Distal5.240067.87294HepG2MATR3
chr162313212123132196-intron-Distal3.966925.92377HepG2MATR3
chr162310411623104192-intron-Distal3.368963.68462HepG2MATR3
chr162311980923119863-intron-Distal3.577974.97118HepG2U2AF2
chr162312467623124815-intron-Distal3.799785.36899HepG2PTBP1
chr162315905123159075-intron-Distal4.4544518.23593HepG2ILF3
chr162312177623121881-intron-Distal4.116867.62792HepG2PTBP1
chr162312537523125428-intron-Distal3.217683.26837HepG2HNRNPC
chr162310477323104832-intron-Distal3.977533.54208HepG2SUGP2
chr162312307423123201-intron-Distal3.201906.20952HepG2MATR3
chr162313258823132695-intron-Distal3.5757310.70638HepG2SUGP2
chr162314585723145936-intron-Distal4.139246.45086HepG2MATR3
chr162312477823124830-intron-Distal3.921577.23308HepG2SUGP2
chr162312343923123510-intron-Distal3.600097.91745HepG2SUGP2
chr162314581523145901-intron-Distal3.435863.68481HepG2HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for USP31 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for USP31 is not available on ENCORE database.

  • 83 RBPs can affect the levels of USP31.  








The Knockdown/knockout RNA-Seq assay for USP31 is not available on ENCORE database.





83 RBPs can affect the gene expression of USP31 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
USP31ENSG00000103404.101342.247101895.68570-0.498104.687803.48880HepG2ABCF1
USP31ENSG00000103404.101179.875701769.65380-0.5848013.6778012.54300HepG2ACO1
USP31ENSG00000103404.101240.092102269.70540-0.8721010.628109.65280HepG2AKAP1
USP31ENSG00000103404.101609.844302251.25910-0.483804.165402.89400HepG2AKAP8
USP31ENSG00000103404.101300.512801877.99300-0.530105.073304.02450HepG2ASCC1
USP31ENSG00000103404.102007.470302350.71730-0.227702.773802.08800HepG2AUH
USP31ENSG00000103404.101040.397801420.05420-0.448804.770103.17310HepG2BUD13
USP31ENSG00000103404.101123.675901515.91690-0.432005.153704.14130HepG2CALR
USP31ENSG00000103404.101513.545002008.08280-0.407902.533801.60540HepG2CCAR1
USP31ENSG00000103404.101392.163101769.33350-0.345905.837204.93570HepG2CKAP4
USP31ENSG00000103404.10990.666902054.10950-1.0520010.103308.67420HepG2CNOT7
USP31ENSG00000103404.101600.466901895.15800-0.243803.329602.52960HepG2DAZAP1
USP31ENSG00000103404.101067.284001636.70580-0.6169015.1858013.57730HepG2DDX19B
USP31ENSG00000103404.101170.359402174.21120-0.8935012.7887011.53520HepG2DDX3X
USP31ENSG00000103404.10701.343001173.17630-0.742206.954205.79650HepG2DDX55
USP31ENSG00000103404.102371.497001292.801600.875206.358504.90480HepG2DDX59
USP31ENSG00000103404.101412.599201693.09580-0.261302.886802.19510HepG2DKC1
USP31ENSG00000103404.101053.975601285.46690-0.286503.655502.92550HepG2DNAJC2
USP31ENSG00000103404.10800.110501302.49940-0.703007.710706.25450HepG2EEF2
USP31ENSG00000103404.10800.525801085.84860-0.439803.377902.15000HepG2EFTUD2
USP31ENSG00000103404.10693.677101057.35170-0.608104.933003.75250HepG2EIF3D
USP31ENSG00000103404.101408.726601984.19840-0.494203.911303.15510HepG2EIF4A3
USP31ENSG00000103404.102373.470801869.680400.344105.468904.35840HepG2EIF4G1
USP31ENSG00000103404.101293.182101641.95290-0.344502.899201.78190HepG2ESF1
USP31ENSG00000103404.102364.093202699.02900-0.191202.002201.47290HepG2ETF1
USP31ENSG00000103404.10650.35530944.98520-0.539106.019504.25440HepG2FAM120A
USP31ENSG00000103404.101347.737201066.489000.337602.739701.95800HepG2FUBP3
USP31ENSG00000103404.10916.445301732.35950-0.918608.211306.39900HepG2FUS
USP31ENSG00000103404.101552.987202001.95540-0.366402.760702.06970HepG2FXR1
USP31ENSG00000103404.101040.691901857.11640-0.8355010.444309.19380HepG2G3BP1
USP31ENSG00000103404.10585.00830941.43880-0.686406.971105.55810HepG2GEMIN5
USP31ENSG00000103404.10803.155301248.28200-0.636205.937404.42370HepG2GNB2L1
USP31ENSG00000103404.10925.117901290.55030-0.480303.590102.87000HepG2GPKOW
USP31ENSG00000103404.101269.798101901.68050-0.582703.998502.66020HepG2GRSF1
USP31ENSG00000103404.10849.316301309.39250-0.624507.620406.62830HepG2HNRNPA1
USP31ENSG00000103404.101485.011001741.69930-0.230002.347001.47820HepG2HNRNPA2B1
USP31ENSG00000103404.10924.452801456.44110-0.655808.251007.10300HepG2HNRNPC
USP31ENSG00000103404.101268.256501726.34720-0.444909.102007.94620HepG2HNRNPL
USP31ENSG00000103404.10968.492901446.81320-0.5791011.5106010.34430HepG2HNRNPU
USP31ENSG00000103404.101628.995202451.56410-0.589705.025803.38400HepG2HSPD1
USP31ENSG00000103404.101799.070601476.214400.285202.410701.73300HepG2IGF2BP1
USP31ENSG00000103404.101609.994602120.50400-0.397402.504201.71550HepG2LARP4
USP31ENSG00000103404.101455.906402323.05410-0.674105.548103.53000HepG2NKRF
USP31ENSG00000103404.101584.524801879.23420-0.246102.270301.57980HepG2NOL12
USP31ENSG00000103404.103120.524201835.738000.7653010.381409.00490HepG2PABPC4
USP31ENSG00000103404.101081.639101432.11740-0.404905.679204.52480HepG2PARN
USP31ENSG00000103404.101164.769301640.00230-0.493702.935801.86680HepG2PCBP2
USP31ENSG00000103404.10687.09190874.40130-0.347802.769201.53890HepG2PKM
USP31ENSG00000103404.101065.244501290.44450-0.276702.592801.87780HepG2PPIL4
USP31ENSG00000103404.101891.639001557.750200.280103.284602.44900HepG2PRPF4
USP31ENSG00000103404.101257.630201724.11530-0.455102.495801.33380HepG2PRPF6
USP31ENSG00000103404.101230.691601793.89040-0.543606.871805.98780HepG2PUF60
USP31ENSG00000103404.101532.388801902.90160-0.312403.162902.44570HepG2PUM2
USP31ENSG00000103404.101481.480701802.51660-0.283003.900703.19420HepG2PUS1
USP31ENSG00000103404.102454.335001963.866300.321504.013003.28060HepG2QKI
USP31ENSG00000103404.102601.082002255.869800.205301.978001.52040HepG2RBM22
USP31ENSG00000103404.102195.544401782.428000.300602.923002.23230HepG2RBM25
USP31ENSG00000103404.101369.188202018.20410-0.559808.445907.59420HepG2NELFE
USP31ENSG00000103404.102202.192501615.098200.447204.331503.50650HepG2RPLP0
USP31ENSG00000103404.10721.498001028.84170-0.512005.172604.36220HepG2RPS19
USP31ENSG00000103404.101047.790501360.02110-0.376302.821402.01350HepG2RPS2
USP31ENSG00000103404.101191.453102063.52640-0.792407.592806.28550HepG2RPS3A
USP31ENSG00000103404.102111.700801219.045700.7926012.7475011.34220HepG2SF3B1
USP31ENSG00000103404.101134.964801502.57860-0.404807.357206.38610HepG2SMN1
USP31ENSG00000103404.10875.680801356.39830-0.631302.531001.78440HepG2SNRNP70
USP31ENSG00000103404.101355.211801970.67050-0.540208.275007.55720HepG2SRSF1
USP31ENSG00000103404.101499.631601771.20120-0.240102.600401.98940HepG2SRSF5
USP31ENSG00000103404.101734.753301472.891700.236002.222301.59190HepG2SRSF7
USP31ENSG00000103404.101715.205602212.11180-0.367006.445805.72330HepG2SSB
USP31ENSG00000103404.101690.326202014.34740-0.253003.558202.86950HepG2SUCLG1
USP31ENSG00000103404.10888.178201167.87490-0.395002.394201.75920HepG2SUPV3L1
USP31ENSG00000103404.102060.433501771.550300.217802.254401.73940HepG2TAF15
USP31ENSG00000103404.101353.605602398.85230-0.825504.392503.07110HepG2TBRG4
USP31ENSG00000103404.101064.012301405.90940-0.402004.390403.79050HepG2TIAL1
USP31ENSG00000103404.101076.183601418.41270-0.398405.833805.06890HepG2TRIM56
USP31ENSG00000103404.101460.329701752.54910-0.263202.116601.36050HepG2TUFM
USP31ENSG00000103404.101463.678701934.57430-0.402406.230604.71920HepG2UTP18
USP31ENSG00000103404.101284.468601740.51240-0.438302.562301.54600HepG2XRCC6
USP31ENSG00000103404.10803.703001149.64490-0.516504.186303.30090HepG2XRN2
USP31ENSG00000103404.102383.262302070.018200.203202.911102.35380HepG2ZNF622
USP31ENSG00000103404.10592.80940428.676500.467604.257903.47340K562DDX47
USP31ENSG00000103404.10278.43240363.77150-0.385702.142501.49540K562EIF2S2
USP31ENSG00000103404.10380.13700262.578500.533703.619602.94230K562FXR1
USP31ENSG00000103404.10784.89330576.549900.445003.609302.68040K562PUF60
USP31ENSG00000103404.10756.90800613.144800.303802.392501.40620K562PUM1
USP31ENSG00000103404.10341.26770245.508600.475002.145501.43090K562RPS19
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for USP31 is not available on ENCORE database.





7 RBPs can affect the splicing of USP31 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUSP31ENSG00000103404.10chr16-230937582309387823091076230914922309618023096310-0.267000.000250.00622excludedHepG2U2AF1
SEUSP31ENSG00000103404.10chr16-2311865123118735231177192311780823119366231195040.080000.000830.06309includedHepG2TBRG4
SEUSP31ENSG00000103404.10chr16-230937582309387823091076230914922309618023096310-0.205000.009040.08428excludedHepG2U2AF2
SEUSP31ENSG00000103404.10chr16-2311865123118735231177192311780823119366231195040.195000.000510.02540includedHepG2MATR3
SEUSP31ENSG00000103404.10chr16-2311865123118735231177192311780823119366231195040.118000.000000.00284includedHepG2PPIG
SEUSP31ENSG00000103404.10chr16-2311865123118735231177192311780823119366231195040.240000.000480.03855includedHepG2TIAL1
SEUSP31ENSG00000103404.10chr16-2311865123118735231177192311780823119366231195040.275000.000010.02492includedHepG2NIP7

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for USP31 is not avaliable on ENCORE database.