RABGAP1

General Information

Gene Name       : RABGAP1
Gene ID             : ENSG00000011454.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RABGAP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RABGAP1ENSG00000011454.1614.4812.6613.57ENCSR000AEF
HepG2RABGAP1ENSG00000011454.1613.2216.2014.71ENCSR985KAT
K562RABGAP1ENSG00000011454.166.918.797.85ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RABGAP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RABGAP1 RNA is bound by 26 proteins.  







eCLIP assay for RABGAP1 is not avaliable on ENCORE database.





26 proteins are bound to RABGAP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9125852554125852607+3'-UTR,CDS4.634586.76290HepG2GRWD1
chr9125866816125866856+3'-UTR4.970036.43721K562PUM2
chr9125860019125860036+3'-UTR,CDS,intron-Proximal3.980335.36555HepG2BCLAF1
chr9125860993125861055+3'-UTR,CDS,intron-Proximal3.531783.32039HepG2PPIG
chr9125866519125866577+3'-UTR4.165884.62276K562TARDBP
chr9125751644125751670+3'-UTR,CDS3.065883.94979HepG2BCLAF1
chr9125838914125839008+3'-UTR,CDS4.3262410.59420HepG2GRWD1
chr9125759520125759582+3'-UTR,CDS,intron-Proximal3.774934.36528HepG2U2AF2
chr9125836642125836684+3'-UTR,CDS3.904303.79347HepG2GRWD1
chr9125748496125748553+3'-UTR,CDS3.260013.08145HepG2HLTF
chr9125835935125835956+3'-UTR,CDS3.761624.46864HepG2BCLAF1
chr9125759576125759639+3'-UTR,CDS3.759119.50935HepG2BCLAF1
chr9125758820125758869+3'-UTR,CDS4.255783.71613K562UCHL5
chr9125832674125832705+3'-UTR,CDS,intron-Proximal3.853488.08603HepG2BCLAF1
chr9125860998125861035+3'-UTR,CDS5.438449.78817HepG2BCLAF1
chr9125832659125832750+3'-UTR,CDS,intron-Proximal4.262516.29405HepG2PRPF8
chr9125866856125866904+3'-UTR3.581575.70180K562PUM2
chr9125866954125867048+3'-UTR3.575145.20738HepG2ZC3H11A
chr9125860063125860124+3'-UTR,CDS3.318576.65904HepG2GRWD1
chr9125746925125746995+3'-UTR,CDS,intron-Distal3.5261110.92438HepG2BCLAF1
chr9125852568125852660+3'-UTR,CDS4.120227.39306HepG2PPIG
chr9125860078125860123+3'-UTR,CDS4.008148.51432HepG2BCLAF1
chr9125748595125748691+3'-UTR,CDS4.856376.46917K562ZNF622
chr9125852607125852671+3'-UTR,CDS,intron-Proximal3.274835.59833HepG2GRWD1
chr9125835924125835955+3'-UTR,CDS3.975663.82000HepG2GRWD1
chr9125758365125758429+3'-UTR,CDS5.0688018.19808HepG2BCLAF1
chr9125835776125835833+3'-UTR,CDS,intron-Proximal4.370984.77050HepG2SF3B4
chr9125832634125832673+3'-UTR,CDS3.810033.12746HepG2GRWD1
chr9125852553125852603+3'-UTR,CDS,intron-Proximal4.041143.53690K562ZNF622
chr9125748626125748690+3'-UTR,CDS3.453967.74581HepG2BCLAF1
chr9125852560125852654+3'-UTR,CDS4.6537613.76815HepG2BCLAF1
chr9125758326125758353+3'-UTR,CDS4.580347.82199HepG2BCLAF1
chr9125758817125758871+3'-UTR,CDS,intron-Proximal3.3904811.59302HepG2BCLAF1
chr9125860041125860106+3'-UTR,CDS4.059623.71613K562UCHL5
chr9125832673125832698+3'-UTR,CDS3.938423.38114HepG2GRWD1
chr9125838911125838997+3'-UTR,CDS,intron-Proximal3.814884.79276K562ZNF622
chr9125746804125746888+5'-UTR,CDS,intron-Distal5.0806428.56729HepG2BCLAF1
chr9125703296125703374+5'-UTR,intron-Distal,intron-Proximal4.168427.69153HepG2NCBP2
chr9125719434125719491+5'-UTR,CDS,intron-Proximal3.7676111.10779HepG2BCLAF1
chr9125746763125746931+5'-UTR,CDS,intron-Distal,intron-Proximal3.371867.32655K562UCHL5
chr9125827641125827727+5'-UTR,CDS4.709016.73025HepG2GRWD1
chr9125746762125746804+5'-UTR,CDS,intron-Distal,intron-Proximal4.1766615.02931HepG2BCLAF1
chr9125746763125746866+5'-UTR,CDS,intron-Distal,intron-Proximal3.821887.13692K562ZNF622
chr9125703283125703359+5'-UTR,intron-Distal3.200693.90917HepG2PRPF4
chr9125827647125827726+5'-UTR,CDS5.750268.86847HepG2BCLAF1
chr9125795846125795948+5'-UTR,intron-Distal4.8399411.95660HepG2PCBP2
chr9125782587125782600+CDS,intron-Proximal5.220397.04013HepG2BCLAF1
chr9125772678125772732+CDS3.837627.58784HepG2BCLAF1
chr9125772709125772808+CDS,intron-Proximal3.403655.91739K562UCHL5
chr9125777821125777861+CDS,intron-Proximal3.833624.82082K562ZNF622
chr9125772765125772805+CDS4.130084.45558HepG2GRWD1
chr9125746955125746988+CDS,intron-Distal3.970993.12746HepG2GRWD1
chr9125782651125782701+CDS4.692755.27053HepG2PPIG
chr9125760920125760978+CDS3.478707.93794HepG2BCLAF1
chr9125777877125777915+CDS5.2635013.34895HepG2BCLAF1
chr9125759631125759665+CDS,intron-Proximal3.831154.89208K562AQR
chr9125772776125772807+CDS4.107205.36555HepG2BCLAF1
chr9125777820125777872+CDS,intron-Proximal3.7412610.57119HepG2PPIG
chr9125772755125772808+CDS,intron-Proximal3.528705.53307K562ZNF622
chr9125777823125777877+CDS3.7268512.60692HepG2BCLAF1
chr9125782589125782643+CDS4.577896.10117HepG2GRWD1
chr9125777821125777903+CDS,intron-Proximal3.508606.09767K562UCHL5
chr9125760842125760913+CDS,intron-Proximal3.286894.05586HepG2U2AF2
chr9125797941125798024+3'-UTR,intron-Distal4.371354.39969K562TARDBP
chr9125771841125771959+intron-Distal3.245613.07751K562KHSRP
chr9125719931125720096+intron-Distal4.327805.62258K562KHSRP
chr9125816914125817002+intron-Distal3.823895.09028HepG2U2AF2
chr9125759033125759094+intron-Distal3.623225.63582HepG2TIAL1
chr9125759025125759088+intron-Distal4.378394.58968K562PRPF8
chr9125832805125832863+intron-Distal4.709846.23638HepG2QKI
chr9125759039125759131+intron-Distal4.512784.96658K562KHSRP
chr9125841087125841215+intron-Distal4.172847.30204HepG2QKI
chr9125758976125759167+intron-Distal,intron-Proximal4.347575.95597K562EFTUD2
chr9125768126125768243+intron-Distal4.096463.27946HepG2HNRNPM
chr9125759814125759875+intron-Distal3.954293.07225K562U2AF1
chr9125859686125859752+intron-Distal3.089153.80334HepG2U2AF2
chr9125842008125842120+intron-Distal4.765186.89468HepG2RBFOX2
chr9125783366125783455+intron-Distal3.236535.94782HepG2U2AF2
chr9125715353125715445+intron-Distal4.163294.05848HepG2QKI
chr9125762824125762871+intron-Distal3.668263.30286HepG2PTBP1
chr9125839975125840039+intron-Distal3.506954.28919HepG2KHSRP
chr9125832753125832805+intron-Distal,intron-Proximal5.114807.43163HepG2QKI
chr9125802138125802213+intron-Distal3.661363.89405HepG2PTBP1
chr9125759836125759889+intron-Distal3.832013.00614K562U2AF2
chr9125844377125844466+intron-Distal3.495764.00631HepG2PTBP1
chr9125833353125833510+intron-Distal4.4078610.35376HepG2HNRNPL
chr9125839208125839256+intron-Distal4.277343.77802HepG2U2AF2
chr9125762797125762857+intron-Distal4.169353.42734K562PTBP1
chr9125758935125758982+intron-Proximal3.616373.91876HepG2U2AF2
chr9125759447125759510+intron-Proximal3.709314.36528HepG2U2AF2
chr9125759665125759727+intron-Proximal5.150676.22530K562AQR
chr9125851956125852003+intron-Proximal4.088304.16338HepG2RBM5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RABGAP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RABGAP1 is not available on ENCORE database.

  • 65 RBPs can affect the levels of RABGAP1.  








The Knockdown/knockout RNA-Seq assay for RABGAP1 is not available on ENCORE database.





65 RBPs can affect the gene expression of RABGAP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RABGAP1ENSG00000011454.121052.933701561.54740-0.568604.928103.55190HepG2AKAP8
RABGAP1ENSG00000011454.121090.647801503.82340-0.463403.816102.89780HepG2ASCC1
RABGAP1ENSG00000011454.121393.774601201.129200.214502.296201.68190HepG2CKAP4
RABGAP1ENSG00000011454.121567.609301148.087500.449202.255001.56910HepG2CNOT7
RABGAP1ENSG00000011454.12668.613901049.86630-0.651009.804207.94580HepG2YBX3
RABGAP1ENSG00000011454.121008.870601449.76260-0.523108.064407.07470HepG2CELF1
RABGAP1ENSG00000011454.121351.934401558.75520-0.205402.173801.50440HepG2DAZAP1
RABGAP1ENSG00000011454.12706.029701030.85490-0.546007.321006.22050HepG2DNAJC21
RABGAP1ENSG00000011454.12784.020001021.80310-0.382205.126504.28310HepG2DNAJC2
RABGAP1ENSG00000011454.12854.114901437.72580-0.751308.570107.56310HepG2EIF2S1
RABGAP1ENSG00000011454.12935.391901546.98640-0.725805.908804.93100HepG2EIF4B
RABGAP1ENSG00000011454.122313.782702015.500400.199002.078701.54230HepG2ETF1
RABGAP1ENSG00000011454.12635.19300798.76470-0.330602.428301.33550HepG2FAM120A
RABGAP1ENSG00000011454.121167.873601487.10390-0.348602.224101.62460HepG2G3BP1
RABGAP1ENSG00000011454.121186.282901432.58670-0.272202.649501.73360HepG2HNRNPA2B1
RABGAP1ENSG00000011454.121101.763501505.87550-0.450804.050303.21870HepG2HNRNPK
RABGAP1ENSG00000011454.12976.107701419.87770-0.5407010.772009.51960HepG2HNRNPL
RABGAP1ENSG00000011454.12978.169701282.28730-0.390602.839702.20320HepG2HNRNPLL
RABGAP1ENSG00000011454.12674.66050972.16560-0.527005.330704.05630HepG2HNRNPM
RABGAP1ENSG00000011454.12966.187801149.98330-0.251202.425801.85520HepG2HNRNPU
RABGAP1ENSG00000011454.121002.902101511.60120-0.591905.806904.86370HepG2IGF2BP2
RABGAP1ENSG00000011454.12809.953001093.88800-0.433602.658901.49500HepG2KHDRBS1
RABGAP1ENSG00000011454.121143.677501520.42630-0.410802.410201.48500HepG2KHSRP
RABGAP1ENSG00000011454.121180.613301603.67510-0.441803.457802.72310HepG2MAGOH
RABGAP1ENSG00000011454.121194.746501612.64430-0.432703.058902.39860HepG2MATR3
RABGAP1ENSG00000011454.121287.921701650.62590-0.358002.369901.78140HepG2NCBP2
RABGAP1ENSG00000011454.12496.25890873.98590-0.816509.562807.02240HepG2NIP7
RABGAP1ENSG00000011454.12429.73360668.20150-0.636803.398801.62620HepG2PA2G4
RABGAP1ENSG00000011454.12992.880501526.04430-0.6201012.4867011.34520HepG2PCBP1
RABGAP1ENSG00000011454.12729.874801025.69030-0.490906.075405.01580HepG2PPIL4
RABGAP1ENSG00000011454.121384.142101140.156000.279702.954102.15770HepG2PRPF4
RABGAP1ENSG00000011454.121241.007701566.33670-0.335905.026904.27570HepG2PUM1
RABGAP1ENSG00000011454.121173.432701565.17340-0.415604.630303.77340HepG2PUM2
RABGAP1ENSG00000011454.12838.295301153.08110-0.460001.991301.38340HepG2RAVER1
RABGAP1ENSG00000011454.122093.051301684.572800.313103.639303.06700HepG2RBM22
RABGAP1ENSG00000011454.12822.250601165.48540-0.503303.991802.78600HepG2RBM27
RABGAP1ENSG00000011454.12817.284601024.10100-0.325403.600902.88320HepG2SAFB2
RABGAP1ENSG00000011454.12610.26800872.87850-0.516303.893902.77830HepG2SERBP1
RABGAP1ENSG00000011454.121014.671201901.81250-0.906402.734701.39240HepG2SF1
RABGAP1ENSG00000011454.121553.321301269.247200.291302.067601.45160HepG2SF3B1
RABGAP1ENSG00000011454.121308.322701616.64750-0.305303.619702.95640HepG2SF3B4
RABGAP1ENSG00000011454.12886.153201194.25800-0.430507.043806.09070HepG2SMN1
RABGAP1ENSG00000011454.12963.734701412.24710-0.551303.187002.34710HepG2SNRNP70
RABGAP1ENSG00000011454.122200.095701687.454400.382606.656506.00000HepG2SRSF1
RABGAP1ENSG00000011454.12854.474901372.85510-0.6841014.7997013.70480HepG2SRSF9
RABGAP1ENSG00000011454.122368.483201651.903600.5197012.0167011.09540HepG2SSB
RABGAP1ENSG00000011454.12554.310201127.41670-1.0243026.5649025.04180HepG2TRIM56
RABGAP1ENSG00000011454.121129.392101441.54910-0.352103.096002.16700HepG2TUFM
RABGAP1ENSG00000011454.12379.34950550.08400-0.536103.429102.58860HepG2UCHL5
RABGAP1ENSG00000011454.121077.902701328.09530-0.301103.676902.88940HepG2UPF1
RABGAP1ENSG00000011454.121379.681701125.176200.294103.779203.01540HepG2ZC3H8
RABGAP1ENSG00000011454.121191.198501460.65110-0.294204.150803.51820HepG2ZNF622
RABGAP1ENSG00000011454.121161.90510843.068600.462703.733903.07260K562AQR
RABGAP1ENSG00000011454.12685.20150519.988600.397902.381501.57830K562BOP1
RABGAP1ENSG00000011454.121290.56930924.349500.481402.264401.32230K562CNOT7
RABGAP1ENSG00000011454.12664.78650492.129600.433803.420102.24620K562DDX3X
RABGAP1ENSG00000011454.121278.630001089.202500.231202.067001.32160K562DKC1
RABGAP1ENSG00000011454.12616.84160824.62180-0.418802.975602.19300K562GRSF1
RABGAP1ENSG00000011454.12666.20780450.740300.563603.243402.22410K562KRR1
RABGAP1ENSG00000011454.12500.90960664.50710-0.407703.100302.11990K562MATR3
RABGAP1ENSG00000011454.12661.66220515.279600.360602.241001.45380K562METAP2
RABGAP1ENSG00000011454.12667.90050513.409000.379402.809401.57020K562NCBP2
RABGAP1ENSG00000011454.12535.06560728.41510-0.445003.190402.29960K562PPIG
RABGAP1ENSG00000011454.121668.509401220.858800.450604.186403.18870K562PUF60
RABGAP1ENSG00000011454.121244.442101003.818900.309902.163301.67100K562PUS1
RABGAP1ENSG00000011454.12494.59750652.77100-0.400302.517301.48020K562NELFE
RABGAP1ENSG00000011454.12870.75580683.866400.348503.282602.39690K562SF3A3
RABGAP1ENSG00000011454.12831.45960634.227200.390503.106502.36090K562SRSF1
RABGAP1ENSG00000011454.12464.55890641.85940-0.466403.222602.45950K562TARDBP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RABGAP1 is not available on ENCORE database.





1 RBPs can affect the splicing of RABGAP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSRABGAP1ENSG00000011454.12chr9+1258609671258610771258609931258610771258599761258601240.149000.006380.03578longerK562AQR
A3SSRABGAP1ENSG00000011454.12chr9+1258600001258600321258600191258600321258524871258526640.061000.013030.06635longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RABGAP1 is not avaliable on ENCORE database.