PTP4A1

General Information

Gene Name : PTP4A1
Gene ID : ENSG00000112245.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PTP4A1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PTP4A1	ENSG00000112245.11	65.42	53.96	59.69	ENCSR000AEF
HepG2	PTP4A1	ENSG00000112245.11	183.25	383.80	283.52	ENCSR985KAT
K562	PTP4A1	ENSG00000112245.11	41.20	45.40	43.30	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PTP4A1 is not avaliable on ENCORE database.

Proteins bound to RNA

PTP4A1 RNA is bound by 56 proteins.

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eCLIP assay for PTP4A1 is not avaliable on ENCORE database.

56 proteins are bound to PTP4A1 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	64291046	64291103	+	3'-UTR	3.65266	72.35371	HepG2	FUBP3
chr6	64289946	64290003	+	CDS,intron-Proximal	4.29803	64.36164	HepG2	U2AF2
chr6	64291233	64291264	+	3'-UTR	3.71320	52.34828	HepG2	FUBP3
chr6	64291207	64291233	+	3'-UTR	4.51099	49.31741	HepG2	FUBP3
chr6	64283255	64283343	+	intron-Distal	3.44927	48.23382	HepG2	CSTF2T
chr6	64291182	64291207	+	3'-UTR	4.80947	48.16946	HepG2	FUBP3
chr6	64239446	64239537	+	intron-Distal	5.41539	48.12529	HepG2	PTBP1
chr6	64282764	64282820	+	intron-Distal	3.66699	45.24590	HepG2	CSTF2T
chr6	64244310	64244354	+	intron-Distal	3.73027	43.69776	HepG2	HNRNPL
chr6	64291152	64291182	+	3'-UTR	5.49462	43.18392	HepG2	FUBP3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 247 entries

eCLIP assay for PTP4A1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PTP4A1 is not available on ENCORE database.
117 RBPs can affect the levels of PTP4A1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PTP4A1 is not available on ENCORE database.

117 RBPs can affect the gene expression of PTP4A1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PTP4A1	ENSG00000112245.6	3037.31640	10397.21560	-1.77530	160.24800	156.65870	HepG2	PRPF4
PTP4A1	ENSG00000112245.6	5784.63970	13374.15370	-1.20910	61.31580	59.12130	HepG2	QKI
PTP4A1	ENSG00000112245.6	22583.59980	13419.67080	0.75080	45.28220	43.87650	HepG2	SRSF1
PTP4A1	ENSG00000112245.6	6449.61400	10637.84790	-0.72190	40.62370	38.59990	HepG2	SAFB2
PTP4A1	ENSG00000112245.6	25861.86370	15678.53600	0.72190	39.83970	38.43050	HepG2	SSB
PTP4A1	ENSG00000112245.6	22372.36960	12062.05480	0.89110	39.46150	37.66720	HepG2	TAF15
PTP4A1	ENSG00000112245.6	21274.50890	12856.78070	0.72650	36.86220	35.16130	HepG2	SF3B4
PTP4A1	ENSG00000112245.6	22510.05550	13743.08400	0.71180	34.67550	33.21690	HepG2	NELFE
PTP4A1	ENSG00000112245.6	7085.13400	11710.74810	-0.72500	33.43080	31.73860	HepG2	TRIM56
PTP4A1	ENSG00000112245.6	15498.92110	10260.60750	0.59500	32.55080	30.73340	HepG2	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 134 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PTP4A1 is not available on ENCORE database.

18 RBPs can affect the splicing of PTP4A1 :

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Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	PTP4A1	ENSG00000112245.6	chr6	+	64260209	64260398			64242241	64242435	64286340	64286487	0.15500	0.00000	included	HepG2	U2AF2
SE	PTP4A1	ENSG00000112245.6	chr6	+	64242241	64242435			64237723	64237989	64286340	64286487	-0.29000	0.00000	excluded	HepG2	U2AF2
SE	PTP4A1	ENSG00000112245.6	chr6	+	64242241	64242450			64237723	64237989	64260204	64260398	-0.33400	0.00310	excluded	HepG2	NIP7
MXE	PTP4A1	ENSG00000112245.6	chr6	+	64242241	64242435	64260209	64260398	64237723	64237989	64286340	64286487	-0.17900	0.00022	2included	HepG2	U2AF1
MXE	PTP4A1	ENSG00000112245.6	chr6	+	64242241	64242435	64260241	64260398	64237723	64237989	64286340	64286487	-0.17900	0.00022	2included	HepG2	U2AF1
MXE	PTP4A1	ENSG00000112245.6	chr6	+	64242241	64242435	64260204	64260398	64237723	64237989	64286340	64286487	-0.20100	0.00000	2included	HepG2	SRSF1
MXE	PTP4A1	ENSG00000112245.6	chr6	+	64242241	64242435	64260209	64260398	64237723	64237989	64286340	64286487	-0.23400	0.00000	2included	HepG2	SRSF1
MXE	PTP4A1	ENSG00000112245.6	chr6	+	64242241	64242435	64260233	64260398	64237723	64237989	64286340	64286487	-0.23400	0.00000	2included	HepG2	SRSF1
MXE	PTP4A1	ENSG00000112245.6	chr6	+	64242241	64242450	64260204	64260398	64237723	64237989	64286340	64286487	-0.16300	0.00000	2included	HepG2	SRSF1
MXE	PTP4A1	ENSG00000112245.6	chr6	+	64242241	64242450	64260209	64260398	64237723	64237989	64286340	64286487	-0.19600	0.00000	2included	HepG2	SRSF1

Showing 1 to 10 of 51 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PTP4A1

General Information

Functions

Localization

Domains (AlphaFold: PTP4A1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PTP4A1 is not avaliable on ENCORE database.

56 proteins are bound to PTP4A1 RNA:

eCLIP assay for PTP4A1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PTP4A1 is not available on ENCORE database.

117 RBPs can affect the gene expression of PTP4A1 :

The Knockdown/knockout RNA-Seq assay for PTP4A1 is not available on ENCORE database.

18 RBPs can affect the splicing of PTP4A1 :

The Knockdown/knockout RNA-Seq assay for PTP4A1 is not avaliable on ENCORE database.