TSPAN9

General Information

Gene Name       : TSPAN9
Gene ID             : ENSG00000011105.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TSPAN9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TSPAN9ENSG00000011105.130.000.080.04ENCSR000AEF
HepG2TSPAN9ENSG00000011105.1340.2922.4131.35ENCSR985KAT
K562TSPAN9ENSG00000011105.130.340.510.43ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TSPAN9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TSPAN9 RNA is bound by 25 proteins.  







eCLIP assay for TSPAN9 is not avaliable on ENCORE database.





25 proteins are bound to TSPAN9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1233931763393189+3'-UTR5.222847.48708HepG2AKAP1
chr1233929143392950+3'-UTR6.3368533.86622HepG2AKAP1
chr1233944503394541+3'-UTR4.286453.69433K562UPF1
chr1233952383395273+3'-UTR5.8295912.43282HepG2UPF1
chr1233950713395174+3'-UTR6.7675327.76482HepG2UPF1
chr1233947263394752+3'-UTR5.5615110.05440HepG2UPF1
chr1233935423393623+3'-UTR6.2937818.04243HepG2AKAP1
chr1233935323393551+3'-UTR3.810948.15141HepG2UPF1
chr1233929483393013+3'-UTR6.9718556.89306HepG2UPF1
chr1233927993392844+3'-UTR4.051033.88726HepG2TIAL1
chr1233955193395565+3'-UTR5.9102314.52363HepG2UPF1
chr1233928953392968+3'-UTR3.140597.90229HepG2TIA1
chr1233924213392482+3'-UTR5.4928616.85427HepG2UPF1
chr1233939783394040+3'-UTR5.4789817.44157HepG2UPF1
chr1233930133393152+3'-UTR5.1826933.50024HepG2UPF1
chr1233956233395669+3'-UTR4.6871713.04711HepG2AKAP1
chr1233875843387629+3'-UTR,CDS,intron-Proximal3.453436.67587HepG2DDX3X
chr1233932593393311+3'-UTR4.9656521.24485HepG2UPF1
chr1233925853392641+3'-UTR6.0627616.62098HepG2UPF1
chr1233949463394972+3'-UTR5.383809.73101HepG2AKAP1
chr1233938663393887+3'-UTR4.090856.35488HepG2AKAP1
chr1233945493394597+3'-UTR5.9377313.62786HepG2AKAP1
chr1233928843392914+3'-UTR5.5918018.84814HepG2AKAP1
chr1233929503393004+3'-UTR6.0777929.40421HepG2AKAP1
chr1233924343392456+3'-UTR5.192968.32932HepG2AKAP1
chr1233947243394768+3'-UTR4.7993111.97446HepG2AKAP1
chr1233928523392962+3'-UTR3.336216.56503HepG2FUBP3
chr1233937363393821+3'-UTR6.6689518.72324HepG2UPF1
chr1233925243392585+3'-UTR6.2847919.62541HepG2UPF1
chr1233928923392948+3'-UTR6.1148143.64147HepG2UPF1
chr1233935803393606+3'-UTR5.431198.87118HepG2UPF1
chr1233951083395187+3'-UTR5.2477114.94366HepG2AKAP1
chr1233954073395441+3'-UTR4.9135515.50467HepG2AKAP1
chr1233941593394223+3'-UTR3.301713.68924HepG2PRPF4
chr1233925253392560+3'-UTR3.863558.70465HepG2AKAP1
chr1233923553392413+3'-UTR5.8123613.99017HepG2AKAP1
chr1233930513393113+3'-UTR6.3080617.76708HepG2AKAP1
chr1233929053392993+3'-UTR4.545374.07810K562UPF1
chr1233923663392421+3'-UTR5.3426326.77657HepG2UPF1
chr1233932553393320+3'-UTR5.4916534.50337HepG2AKAP1
chr1233934053393505+3'-UTR5.9503640.05244HepG2UPF1
chr1233928913392917+3'-UTR5.065318.97012HepG2TIAL1
chr1233939773394041+3'-UTR5.4813121.33063HepG2AKAP1
chr1233941493394232+3'-UTR5.7170516.26764HepG2UPF1
chr1233941533394225+3'-UTR6.3376715.01029HepG2AKAP1
chr1233933903393502+3'-UTR4.8588523.87543HepG2AKAP1
chr1233944763394529+3'-UTR6.6039619.19429HepG2AKAP1
chr1233929173392990+3'-UTR3.5400710.46281HepG2TIAL1
chr1233931523393206+3'-UTR6.2149414.22450HepG2UPF1
chr1233949653395037+3'-UTR4.1444012.60046HepG2UPF1
chr1233925983392650+3'-UTR4.0014812.32481HepG2AKAP1
chr1233952503395288+3'-UTR5.5335411.40646HepG2AKAP1
chr1233875843387729+3'-UTR,CDS,intron-Proximal3.878065.42514HepG2RPS3
chr1233944493394475+3'-UTR5.350127.48708HepG2AKAP1
chr1233923503392366+3'-UTR5.8599612.43282HepG2UPF1
chr1231866013186720+5'-UTR,intron-Distal,intron-Proximal5.097387.34038HepG2PRPF4
chr1231865433186619+5'-UTR3.128763.65693HepG2NCBP2
chr1231865493186620+5'-UTR,intron-Proximal4.5906918.94481HepG2DDX3X
chr1233909363390983+CDS5.100217.03502HepG2SND1
chr1233903633390491+CDS,intron-Proximal4.9743814.62510HepG2SND1
chr1233896423389690+CDS,intron-Proximal4.632734.28193HepG2AQR
chr1233895533389644+CDS3.632133.19472HepG2SND1
chr1232164983216548+intron-Distal3.880344.63118HepG2HNRNPM
chr1231978963198005+intron-Distal4.586243.99130HepG2FAM120A
chr1231976413197687+intron-Distal3.080714.88853HepG2PRPF4
chr1232085153208600+intron-Distal3.431733.68462HepG2MATR3
chr1232099873210062+intron-Distal3.725833.84025HepG2SUGP2
chr1232150863215171+intron-Distal5.0678917.63732HepG2HNRNPL
chr1232407403240825+intron-Distal4.386094.31871HepG2HNRNPM
chr1232161163216199+intron-Distal3.084163.71618HepG2AGGF1
chr1232953283295395+intron-Distal4.441274.09469HepG2XPO5
chr1232206673220746+intron-Distal3.926323.50357HepG2QKI
chr1232437133243829+intron-Distal3.418744.36184HepG2PRPF4
chr1232147663214842+intron-Distal5.6175710.61445HepG2AGGF1
chr1233347063334794+intron-Distal3.849064.14792HepG2XPO5
chr1233264623326531+intron-Distal4.107813.68544HepG2EIF3D
chr1232431023243194+intron-Distal3.912763.16983HepG2FUS
chr1232223473222456+intron-Distal3.058733.30948HepG2PRPF4
chr1232076223207681+intron-Distal3.379095.10681HepG2SUGP2
chr1232153163215368+intron-Distal4.206167.13755HepG2HNRNPL
chr1232071713207192+intron-Distal3.977533.04224HepG2SUGP2
chr1231947643194841+intron-Distal3.288853.50045HepG2SFPQ
chr1232097273209814+intron-Distal3.984914.61500HepG2HNRNPM
chr1232379523238077+intron-Distal3.891188.95102HepG2HNRNPL
chr1232088943208932+intron-Distal3.490773.59523HepG2SUGP2
chr1232396283239692+intron-Distal4.058034.10336HepG2SUGP2
chr1233628563363006+intron-Distal4.205393.84437HepG2PRPF4
chr1232627853262846+intron-Distal4.587285.58765HepG2QKI
chr1232147983214894+intron-Distal3.811749.63622HepG2HNRNPL
chr1232151823215296+intron-Distal3.649559.12590HepG2AGGF1
chr1233337113333772+intron-Distal4.411833.37054HepG2XPO5
chr1233471823347277+intron-Distal5.342677.38423HepG2PCBP2
chr1232152083215257+intron-Distal4.407183.25460K562AGGF1
chr1232151873215264+intron-Distal3.148794.81355HepG2XPO5
chr1232152033215323+intron-Distal4.955376.40009HepG2GTF2F1
chr1232742143274262+intron-Distal4.460266.11036HepG2XPO5
chr1232072203207289+intron-Distal3.128483.01278HepG2MATR3
chr1232152323215302+intron-Distal4.6979524.32015HepG2HNRNPL
chr1232557983255901+intron-Distal3.758554.19039HepG2PTBP1
chr1232737743273866+intron-Distal4.320194.66899HepG2HNRNPM
chr1232153163215404+intron-Distal4.8350414.98745HepG2AGGF1
chr1232380773238128+intron-Distal4.256894.21977HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TSPAN9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TSPAN9 is not available on ENCORE database.

  • 108 RBPs can affect the levels of TSPAN9.  








The Knockdown/knockout RNA-Seq assay for TSPAN9 is not available on ENCORE database.





108 RBPs can affect the gene expression of TSPAN9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TSPAN9ENSG00000011105.7534.37530890.22540-0.736308.268106.53080HepG2AATF
TSPAN9ENSG00000011105.7717.938101379.61780-0.9423017.3041016.06070HepG2ACO1
TSPAN9ENSG00000011105.71017.382203776.34810-1.8921045.3258043.56620HepG2AKAP1
TSPAN9ENSG00000011105.71060.693701631.37270-0.621103.573002.39560HepG2AKAP8
TSPAN9ENSG00000011105.7850.716601385.90130-0.7041011.8727010.43090HepG2AKAP8L
TSPAN9ENSG00000011105.71741.496203124.45080-0.8433012.9283011.33680HepG2ASCC1
TSPAN9ENSG00000011105.72135.399301545.792900.466108.698507.59400HepG2AUH
TSPAN9ENSG00000011105.71120.75990637.058300.814907.329805.94740HepG2BCLAF1
TSPAN9ENSG00000011105.7689.69770358.299800.944707.475406.55060HepG2BOP1
TSPAN9ENSG00000011105.7811.82940630.791100.363902.864202.08110HepG2CALR
TSPAN9ENSG00000011105.72055.628702968.49510-0.530205.889004.78990HepG2CIRBP
TSPAN9ENSG00000011105.7980.630301379.07950-0.491906.903005.93810HepG2CKAP4
TSPAN9ENSG00000011105.7706.72490328.926401.1033012.8337011.47310HepG2CPSF6
TSPAN9ENSG00000011105.7868.02690669.855200.373802.989701.92970HepG2YBX3
TSPAN9ENSG00000011105.7617.50010911.71850-0.562103.539301.92990HepG2CSTF2T
TSPAN9ENSG00000011105.7916.750101131.53040-0.303702.869002.21690HepG2CELF1
TSPAN9ENSG00000011105.72180.400601216.626300.8416032.3891030.39270HepG2DAZAP1
TSPAN9ENSG00000011105.71038.797401275.83920-0.296503.058502.18510HepG2DDX19B
TSPAN9ENSG00000011105.7669.62410981.64530-0.551905.375504.46150HepG2DDX21
TSPAN9ENSG00000011105.7767.22320961.06580-0.325002.367501.52790HepG2DDX24
TSPAN9ENSG00000011105.71687.429701212.223300.477104.948403.24350HepG2DDX47
TSPAN9ENSG00000011105.7541.30220763.77800-0.496703.357201.86190HepG2DDX52
TSPAN9ENSG00000011105.71490.04890923.813600.689603.475102.35080HepG2DDX5
TSPAN9ENSG00000011105.72361.803503107.98370-0.396102.916002.28380HepG2DDX6
TSPAN9ENSG00000011105.71596.64800634.350901.3316031.4993028.92670HepG2DHX30
TSPAN9ENSG00000011105.71068.359701319.85870-0.305003.172802.45530HepG2DKC1
TSPAN9ENSG00000011105.71355.20740657.673701.0430010.851909.53530HepG2DNAJC21
TSPAN9ENSG00000011105.7522.72980911.11520-0.801607.104705.69900HepG2EEF2
TSPAN9ENSG00000011105.71825.446402986.97650-0.710409.181208.13960HepG2EIF2S1
TSPAN9ENSG00000011105.7503.02640739.52710-0.556004.113103.02500HepG2EIF3D
TSPAN9ENSG00000011105.71224.919503214.31150-1.3918021.5463019.76180HepG2EIF4B
TSPAN9ENSG00000011105.71402.726701200.316700.224702.247901.47940HepG2EIF4G1
TSPAN9ENSG00000011105.71702.115401149.819400.565806.417305.19890HepG2EIF4G2
TSPAN9ENSG00000011105.72156.703601774.791500.281103.360202.70750HepG2ETF1
TSPAN9ENSG00000011105.7851.53210600.085600.504802.781801.50840HepG2FKBP4
TSPAN9ENSG00000011105.71319.511303331.31450-1.3361030.4111028.42820HepG2FXR1
TSPAN9ENSG00000011105.71840.921503089.66390-0.747009.496308.30110HepG2G3BP1
TSPAN9ENSG00000011105.72019.733603280.88290-0.699909.731708.06340HepG2G3BP2
TSPAN9ENSG00000011105.7484.44910658.42510-0.442702.826201.91760HepG2GEMIN5
TSPAN9ENSG00000011105.71589.323401316.995400.271102.775501.79790HepG2HDGF
TSPAN9ENSG00000011105.7403.86580888.36860-1.137308.848906.30010HepG2HLTF
TSPAN9ENSG00000011105.71024.53810738.585700.472004.079603.24980HepG2HNRNPC
TSPAN9ENSG00000011105.71275.58660898.672500.505203.204101.56850HepG2HNRNPD
TSPAN9ENSG00000011105.71130.98820580.091900.9631023.0646021.27350HepG2HNRNPF
TSPAN9ENSG00000011105.71682.588103130.00930-0.8955015.8912014.35760HepG2HNRNPK
TSPAN9ENSG00000011105.71054.47260355.801701.5673028.7768027.10120HepG2HNRNPLL
TSPAN9ENSG00000011105.7503.64140845.75590-0.747802.399501.51230HepG2HNRNPM
TSPAN9ENSG00000011105.7441.07330733.70000-0.734207.211706.26920HepG2HNRNPU
TSPAN9ENSG00000011105.71058.140501775.65260-0.746803.973602.49130HepG2HSPD1
TSPAN9ENSG00000011105.71095.44990571.226600.9393016.8523015.23990HepG2IGF2BP1
TSPAN9ENSG00000011105.72047.465203140.35570-0.617107.558506.49910HepG2IGF2BP2
TSPAN9ENSG00000011105.7951.890002947.97490-1.6309010.757808.93030HepG2IGF2BP3
TSPAN9ENSG00000011105.71971.110901011.529000.962409.683507.16130HepG2ILF3
TSPAN9ENSG00000011105.71661.390101260.995300.397703.308602.19620HepG2KIF1C
TSPAN9ENSG00000011105.71169.73000903.104600.373102.953401.69920HepG2LIN28B
TSPAN9ENSG00000011105.71536.809703332.48280-1.1167018.5740016.95590HepG2MAGOH
TSPAN9ENSG00000011105.71297.245303350.94300-1.3691027.3089025.50210HepG2MATR3
TSPAN9ENSG00000011105.7488.34180773.91430-0.664303.791002.56590HepG2METAP2
TSPAN9ENSG00000011105.7621.66200362.945000.776304.782703.48730HepG2MTPAP
TSPAN9ENSG00000011105.71330.54260833.077700.675403.552402.17690HepG2NAA15
TSPAN9ENSG00000011105.71573.642203429.72090-1.1240020.6983019.06960HepG2NCBP2
TSPAN9ENSG00000011105.71166.52500777.663500.584906.261804.13230HepG2NIP7
TSPAN9ENSG00000011105.7750.06080315.510701.2492017.3065015.62620HepG2NSUN2
TSPAN9ENSG00000011105.72221.19650948.483901.227508.713407.09370HepG2PABPC1
TSPAN9ENSG00000011105.7568.92600726.19270-0.352102.175501.41630HepG2PARN
TSPAN9ENSG00000011105.71369.601903186.01170-1.2180059.6610057.52700HepG2PCBP1
TSPAN9ENSG00000011105.71122.34300654.395600.7782010.489909.10290HepG2PPIL4
TSPAN9ENSG00000011105.71267.24570799.155100.665006.586505.45080HepG2PRPF4
TSPAN9ENSG00000011105.7654.70710921.51020-0.493202.541101.36940HepG2PRPF6
TSPAN9ENSG00000011105.71098.743303242.03200-1.5610067.7363065.88750HepG2PTBP1
TSPAN9ENSG00000011105.72068.858301151.633600.8451015.9175014.64790HepG2PUF60
TSPAN9ENSG00000011105.7980.179901222.52500-0.318704.019903.33350HepG2PUM1
TSPAN9ENSG00000011105.71075.716501405.19530-0.385504.240003.50620HepG2PUS1
TSPAN9ENSG00000011105.7474.86100845.80090-0.832805.007104.07360HepG2RAVER1
TSPAN9ENSG00000011105.71183.498301483.39430-0.325803.312602.75970HepG2RBM22
TSPAN9ENSG00000011105.71052.422503607.94910-1.77750111.50330109.39690HepG2NELFE
TSPAN9ENSG00000011105.71330.836303360.53430-1.3364069.3012067.10390HepG2RECQL
TSPAN9ENSG00000011105.7836.59410624.876400.420903.289902.55470HepG2RPLP0
TSPAN9ENSG00000011105.71134.26510831.157400.448502.292601.43110HepG2RPS10
TSPAN9ENSG00000011105.7457.10800719.68840-0.654805.566504.72840HepG2RPS19
TSPAN9ENSG00000011105.71236.01870653.371300.9196024.7322023.07320HepG2SAFB2
TSPAN9ENSG00000011105.71376.37190981.754700.487303.257101.84290HepG2SART3
TSPAN9ENSG00000011105.71046.340901389.27560-0.409002.400701.77350HepG2SF3A3
TSPAN9ENSG00000011105.71017.61850352.153901.5308023.3522021.53120HepG2SF3B1
TSPAN9ENSG00000011105.71051.093903375.11200-1.68300105.43240102.80910HepG2SF3B4
TSPAN9ENSG00000011105.72147.836301104.268100.9597039.7669037.77160HepG2SLBP
TSPAN9ENSG00000011105.7505.13640761.90580-0.592905.556404.69550HepG2SMN1
TSPAN9ENSG00000011105.7713.36270391.840000.864305.699504.56880HepG2SNRNP70
TSPAN9ENSG00000011105.71044.139203522.99310-1.75450104.80600102.90790HepG2SRSF1
TSPAN9ENSG00000011105.71346.470701137.088500.243702.501301.90170HepG2SRSF5
TSPAN9ENSG00000011105.71082.95890569.915400.9261021.0411019.45030HepG2SRSF7
TSPAN9ENSG00000011105.71763.960102866.23460-0.7003022.6035021.30530HepG2SRSF9
TSPAN9ENSG00000011105.7956.436601454.66400-0.6049012.2048011.27790HepG2SSB
TSPAN9ENSG00000011105.71133.510901769.87760-0.642903.770002.29250HepG2SSRP1
TSPAN9ENSG00000011105.7502.05030907.23180-0.853603.833302.51990HepG2STIP1
TSPAN9ENSG00000011105.7761.471001293.16740-0.7640018.1277016.76130HepG2SUCLG1
TSPAN9ENSG00000011105.71464.89560827.526500.823804.690003.48000HepG2SUPT6H
TSPAN9ENSG00000011105.71349.996203166.90010-1.2301033.2671031.60260HepG2TAF15
TSPAN9ENSG00000011105.7580.81850346.885700.743506.429105.38550HepG2TARDBP
TSPAN9ENSG00000011105.7977.50790712.792700.455503.671703.11310HepG2TIAL1
TSPAN9ENSG00000011105.71205.13420719.308400.744407.074406.24510HepG2TRIM56
TSPAN9ENSG00000011105.72249.592301232.076500.8685030.3357028.54030HepG2UPF1
TSPAN9ENSG00000011105.7755.460701189.51920-0.6549012.3880011.25950HepG2UTP3
TSPAN9ENSG00000011105.71569.35390933.896900.748706.476304.80400HepG2XPO5
TSPAN9ENSG00000011105.7564.56200832.02690-0.559502.970701.66170HepG2XRCC5
TSPAN9ENSG00000011105.7667.03760930.32960-0.480002.625201.59670HepG2XRCC6
TSPAN9ENSG00000011105.72882.828901355.046201.0890055.9291054.28840HepG2ZNF622
TSPAN9ENSG00000011105.718.8094046.00750-1.290402.435001.86020K562FXR1
TSPAN9ENSG00000011105.78.8385027.90350-1.658602.267801.63580K562G3BP2
TSPAN9ENSG00000011105.751.3207017.682501.537103.141502.16940K562PSIP1
TSPAN9ENSG00000011105.735.6886086.78780-1.282003.302802.71760K562PUS1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TSPAN9 is not available on ENCORE database.





3 RBPs can affect the splicing of TSPAN9 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETSPAN9ENSG00000011105.7chr12+339089933909833390363339049533922103395724-0.134000.002350.04156excludedHepG2U2AF1
SETSPAN9ENSG00000011105.7chr12+339089933909833390363339049533922103395724-0.402000.000000.00013excludedHepG2U2AF2
SETSPAN9ENSG00000011105.7chr12+339089933909833390363339049533922103395730-0.060000.001030.04711excludedHepG2SF3B4
SETSPAN9ENSG00000011105.7chr12+319281831928853186542318661933103423310422-0.310000.000000.00004excludedHepG2SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TSPAN9 is not avaliable on ENCORE database.