TSR3

General Information

Gene Name       : TSR3
Gene ID             : ENSG00000007520.3
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TSR3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TSR3ENSG00000007520.30.516.773.64ENCSR000AEF
HepG2TSR3ENSG00000007520.329.257.0618.16ENCSR985KAT
K562TSR3ENSG00000007520.315.976.9611.46ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TSR3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TSR3 RNA is bound by 11 proteins.  







eCLIP assay for TSR3 is not avaliable on ENCORE database.





11 proteins are bound to TSR3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1613993301399378-3'-UTR,intron-Distal,intron-Proximal4.3762512.80402HepG2LARP4
chr1613993351399423-3'-UTR,intron-Distal,intron-Proximal4.4172512.80875HepG2DDX55
chr1613992691399424-3'-UTR,intron-Distal,intron-Proximal3.168736.06342K562UPF1
chr1613993781399420-3'-UTR,intron-Distal,intron-Proximal5.8927615.08292HepG2LARP4
chr1613993261399427-3'-UTR,intron-Distal,intron-Proximal3.445823.02794K562DDX55
chr1613993211399444-3'-UTR,CDS,intron-Distal,intron-Proximal4.517924.70174HepG2LSM11
chr1613993811399418-3'-UTR,intron-Distal,intron-Proximal5.8537653.89726K562PABPC4
chr1613993091399345-3'-UTR,intron-Distal,intron-Proximal7.9582350.34635K562PABPC4
chr1613993201399425-3'-UTR,intron-Distal,intron-Proximal3.8086813.18673K562DDX6
chr1613993451399381-3'-UTR,intron-Distal,intron-Proximal7.61307400.00000K562PABPC4
chr1613993281399428-3'-UTR,intron-Distal,intron-Proximal3.484324.89563K562APOBEC3C
chr1614017421401848-5'-UTR,CDS,intron-Distal5.0493036.14184HepG2DDX3X
chr1614007521400811-CDS,intron-Distal,intron-Proximal3.598745.73990HepG2PRPF8
chr1614007561400809-CDS,intron-Distal,intron-Proximal4.208594.98250K562AQR
chr1614014831401523-CDS,intron-Distal,intron-Proximal6.3977511.20892HepG2DDX3X
chr1614015441401597-CDS,intron-Distal,intron-Proximal4.602449.66125HepG2DDX3X
chr1614005861400640-intron-Distal4.712618.70712HepG2XPO5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TSR3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TSR3 is not available on ENCORE database.

  • 80 RBPs can affect the levels of TSR3.  








The Knockdown/knockout RNA-Seq assay for TSR3 is not available on ENCORE database.





80 RBPs can affect the gene expression of TSR3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TSR3ENSG00000007520.3291.93230187.457400.639004.179603.42050HepG2CELF1
TSR3ENSG00000007520.3301.31270201.565200.579903.927503.06850HepG2DAZAP1
TSR3ENSG00000007520.3228.34490145.673000.648402.712901.37150HepG2DDX52
TSR3ENSG00000007520.3156.8136086.224700.862802.405501.74440HepG2DNAJC21
TSR3ENSG00000007520.3188.0942085.411901.138804.206603.43420HepG2DNAJC2
TSR3ENSG00000007520.3299.66950173.742100.786303.472002.44620HepG2EEF2
TSR3ENSG00000007520.3194.02610126.094300.621602.639501.50010HepG2FAM120A
TSR3ENSG00000007520.3230.72500339.35970-0.556603.241202.39430HepG2FUBP3
TSR3ENSG00000007520.3164.36730364.15580-1.147602.279701.67230HepG2G3BP1
TSR3ENSG00000007520.3207.03580123.135200.749503.147801.69070HepG2HNRNPA0
TSR3ENSG00000007520.3306.18730183.611200.737705.911504.95800HepG2HNRNPL
TSR3ENSG00000007520.3187.3832096.171400.962203.226602.57540HepG2HNRNPU
TSR3ENSG00000007520.3194.8267098.238800.987702.613701.89860HepG2ILF2
TSR3ENSG00000007520.3213.78640138.738000.623702.525101.40000HepG2KHDRBS1
TSR3ENSG00000007520.3206.96850125.493500.721702.912201.74810HepG2LARP7
TSR3ENSG00000007520.3195.68370113.457400.786303.374901.81430HepG2NIP7
TSR3ENSG00000007520.3367.62920199.871500.879108.001606.72530HepG2NOL12
TSR3ENSG00000007520.3237.88740359.70560-0.596503.383502.55580HepG2NSUN2
TSR3ENSG00000007520.3185.07730116.612800.666302.786901.55320HepG2PKM
TSR3ENSG00000007520.3242.5802085.780201.499609.225307.92530HepG2PPIL4
TSR3ENSG00000007520.3118.12390239.40830-1.019205.579704.52130HepG2PRPF4
TSR3ENSG00000007520.3344.60650190.794100.852803.374202.72520HepG2PUF60
TSR3ENSG00000007520.3401.84240202.535600.9884010.687809.68290HepG2PUM1
TSR3ENSG00000007520.3323.50940460.38500-0.509003.466002.90430HepG2RBM22
TSR3ENSG00000007520.3319.08000151.335501.076106.673305.12600HepG2RBM27
TSR3ENSG00000007520.3199.18590122.892100.696602.367501.38880HepG2RCC2
TSR3ENSG00000007520.3253.80910137.238700.887002.157301.60770HepG2RPS19
TSR3ENSG00000007520.3313.93980139.552701.169607.931206.62190HepG2RPS2
TSR3ENSG00000007520.3283.47620146.193900.955205.366904.24580HepG2RPS3A
TSR3ENSG00000007520.3298.82580142.473201.068506.515104.87310HepG2RPS5
TSR3ENSG00000007520.3257.4282085.654901.5875012.1158010.91520HepG2SAFB2
TSR3ENSG00000007520.3375.86730182.940201.038807.858206.76740HepG2SLBP
TSR3ENSG00000007520.3232.0973099.905101.216006.530705.60850HepG2SMN1
TSR3ENSG00000007520.3239.01110149.134000.680403.100402.08030HepG2SMNDC1
TSR3ENSG00000007520.3225.08860446.74670-0.989006.035204.87510HepG2SNRNP70
TSR3ENSG00000007520.3203.99510363.34180-0.832806.706306.04800HepG2SRSF1
TSR3ENSG00000007520.3353.96230188.380400.909808.822807.78770HepG2SRSF5
TSR3ENSG00000007520.3217.64840127.216100.774603.715402.42290HepG2STIP1
TSR3ENSG00000007520.3389.59980214.241300.862708.881007.87340HepG2SUCLG1
TSR3ENSG00000007520.3141.32930326.62990-1.2086011.5125010.49150HepG2TAF15
TSR3ENSG00000007520.3200.46700127.095900.657302.635301.65910HepG2TFIP11
TSR3ENSG00000007520.3217.52120300.08160-0.464202.388101.60940HepG2TIA1
TSR3ENSG00000007520.3216.2474093.512501.209404.876104.25090HepG2TIAL1
TSR3ENSG00000007520.3291.5540094.279701.6286011.4676010.43630HepG2TRIM56
TSR3ENSG00000007520.3405.01470186.396501.119504.651103.48500HepG2TUFM
TSR3ENSG00000007520.3387.37400197.296800.973306.172304.89380HepG2UBE2L3
TSR3ENSG00000007520.3472.23010364.256600.374402.864102.31020HepG2ZNF622
TSR3ENSG00000007520.3441.60250289.194900.610605.338404.59160K562AGGF1
TSR3ENSG00000007520.3398.72070300.925300.405902.247901.65630K562AKAP8L
TSR3ENSG00000007520.3334.39190471.48350-0.495702.828102.23400K562AQR
TSR3ENSG00000007520.3475.88240315.752100.591703.370202.35270K562ATP5C1
TSR3ENSG00000007520.3277.04470180.304500.619602.471301.56720K562BCLAF1
TSR3ENSG00000007520.3219.63360136.788000.683102.262201.32590K562CSTF2
TSR3ENSG00000007520.3457.52040328.725900.476903.416302.06880K562DDX21
TSR3ENSG00000007520.3353.93560220.493800.682604.910903.46890K562DDX3X
TSR3ENSG00000007520.3815.34510488.839900.7379011.7133010.47330K562DDX47
TSR3ENSG00000007520.3165.2160078.732701.069205.904004.75480K562EIF3G
TSR3ENSG00000007520.3193.67650292.86040-0.596603.080302.17340K562FMR1
TSR3ENSG00000007520.3348.22720239.559900.539503.477302.81050K562FXR1
TSR3ENSG00000007520.313.3137058.58400-2.137605.792304.68360K562G3BP2
TSR3ENSG00000007520.3778.02580497.948600.643702.796102.03710K562GRSF1
TSR3ENSG00000007520.3436.20790286.337200.607203.586602.51490K562HNRNPM
TSR3ENSG00000007520.3247.10740119.827201.044103.375402.19930K562IGF2BP2
TSR3ENSG00000007520.3180.66530121.851500.568102.437001.33930K562IGF2BP3
TSR3ENSG00000007520.3316.24610489.76410-0.631002.721601.31150K562ILF2
TSR3ENSG00000007520.3219.78790125.862100.804204.574803.48650K562MAGOH
TSR3ENSG00000007520.3192.82790125.595900.618402.218101.39940K562MATR3
TSR3ENSG00000007520.3467.68700357.743900.386502.508801.65070K562MBNL1
TSR3ENSG00000007520.3513.30630395.189600.377202.099301.38870K562PPIG
TSR3ENSG00000007520.3247.39710140.486000.816303.840902.95800K562PRPF8
TSR3ENSG00000007520.3239.11370122.288300.967306.884405.87270K562PTBP1
TSR3ENSG00000007520.3478.66300298.400900.681705.262804.54510K562PUS1
TSR3ENSG00000007520.3397.85660290.775200.452202.930902.32340K562RBM15
TSR3ENSG00000007520.3352.88590143.043401.302604.999403.89850K562RPS19
TSR3ENSG00000007520.3176.3189086.570301.026104.010402.77600K562RPS3
TSR3ENSG00000007520.3259.97870504.56860-0.9567012.3189010.69800K562SF3A3
TSR3ENSG00000007520.3402.00280516.93690-0.362802.758301.82340K562SRPK2
TSR3ENSG00000007520.3173.73460119.891300.535101.921101.31910K562SRSF1
TSR3ENSG00000007520.3150.7796083.551400.851603.059801.93950K562SRSF4
TSR3ENSG00000007520.3184.66280113.248200.705303.178202.03890K562SRSF5
TSR3ENSG00000007520.3271.42310456.77360-0.750905.767903.75900K562SSRP1
TSR3ENSG00000007520.3267.85140121.320501.142508.619707.28150K562TARDBP
TSR3ENSG00000007520.3226.38700117.031900.951805.865604.60450K562TIA1
TSR3ENSG00000007520.3177.05060114.884100.623902.457501.44110K562TRA2A
TSR3ENSG00000007520.3232.25760146.615500.663602.845801.61630K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TSR3 is not available on ENCORE database.





1 RBPs can affect the splicing of TSR3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETSR3ENSG00000007520.3chr16-139988913999531399240139960914000581400226-0.198000.000010.00025excludedHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TSR3 is not avaliable on ENCORE database.