NDE1

General Information

Gene Name       : NDE1
Gene ID             : ENSG00000072864.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NDE1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NDE1ENSG00000072864.1467.1671.7469.45ENCSR000AEF
HepG2NDE1ENSG00000072864.1450.5867.2858.93ENCSR985KAT
K562NDE1ENSG00000072864.1428.3227.1827.75ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NDE1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NDE1 RNA is bound by 22 proteins.  







eCLIP assay for NDE1 is not avaliable on ENCORE database.





22 proteins are bound to NDE1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr161575860815758680+3'-UTR,5'-UTR,CDS3.144586.65384K562UCHL5
chr161582005715820124+3'-UTR4.335834.62831HepG2PCBP2
chr161578124815781379+3'-UTR,CDS,intron-Proximal4.129589.87150K562UCHL5
chr161581948115819520+3'-UTR3.434183.42164K562UPF1
chr161577171315771808+3'-UTR,CDS,intron-Proximal3.831896.01807K562GRWD1
chr161578499615785059+3'-UTR,CDS,intron-Proximal4.370764.12139K562DDX24
chr161581954815819617+3'-UTR4.078936.81876K562UPF1
chr161575861515758676+3'-UTR,5'-UTR,CDS3.577267.52317HepG2GRWD1
chr161581854115818594+3'-UTR3.247313.34231K562RBM15
chr161581953915819619+3'-UTR3.835315.10007K562FAM120A
chr161579386115793907+3'-UTR,intron-Distal3.493975.95678K562UPF1
chr161581930215819344+3'-UTR4.302664.07810K562UPF1
chr161578123115781327+3'-UTR,CDS,intron-Proximal3.096977.64415K562ZNF622
chr161582004515820114+3'-UTR3.429715.05294K562UPF1
chr161582008615820176+3'-UTR3.089834.09267K562FAM120A
chr161577171515771807+3'-UTR,CDS,intron-Proximal3.338756.95218K562UCHL5
chr161577173415771810+3'-UTR,CDS,intron-Proximal3.282927.04572HepG2GRWD1
chr161581938315819481+3'-UTR4.3224212.03763K562UPF1
chr161574412115744223+5'-UTR,intron-Distal,intron-Proximal4.214347.26133HepG2PRPF8
chr161575869215758721+CDS,intron-Proximal3.134685.92720K562ZNF622
chr161576123315761303+CDS,intron-Proximal3.059624.38217K562UCHL5
chr161575868015758719+CDS,intron-Proximal3.811466.77066K562UCHL5
chr161576114015761211+CDS,intron-Proximal3.102885.20917HepG2BCLAF1
chr161578802015788065+CDS,intron-Proximal3.258594.49055K562YBX3
chr161576113815761233+CDS,intron-Proximal3.8251512.59831K562UCHL5
chr161578807515788159+CDS,intron-Proximal5.444595.35117HepG2PRPF8
chr161578806515788114+CDS,intron-Proximal3.967563.83925K562YBX3
chr161576113915761213+CDS,intron-Proximal3.038654.17822HepG2PPIG
chr161578806815788116+CDS,intron-Proximal3.384415.86107HepG2PPIG
chr161575867615758719+CDS,intron-Proximal3.044416.42940HepG2GRWD1
chr161575865815758724+CDS,intron-Proximal3.613774.42776HepG2BUD13
chr161574455815744646+intron-Distal5.135806.40067K562PTBP1
chr161579498815795044+intron-Distal3.982526.24912HepG2UPF1
chr161579554515795589+intron-Distal3.267633.34822K562RBM15
chr161574452315744722+intron-Distal4.4464411.75932HepG2PCBP2
chr161579494515794990+intron-Distal3.802663.66308K562UPF1
chr161581332715813406+intron-Distal4.773695.72435K562SLTM
chr161576710015767127+intron-Distal3.390665.99660HepG2RBM22
chr161579493915795027+intron-Distal3.253519.50532K562AKAP1
chr161581431715814363+intron-Distal4.204943.36882K562SLTM
chr161576996115770065+intron-Distal3.856153.84109HepG2PCBP2
chr161574460815744713+intron-Distal3.872353.33442K562HNRNPK
chr161579992115799970+intron-Distal4.394203.75920K562SLTM
chr161574417315744299+intron-Distal,intron-Proximal4.5148513.00591HepG2EFTUD2
chr161579468215794755+intron-Distal3.498054.53184K562IGF2BP1
chr161579464515794725+intron-Distal4.092833.31982HepG2IGF2BP1
chr161576708315767105+intron-Distal4.045395.99968K562PRPF8
chr161576708415767100+intron-Distal3.805706.72755HepG2RBM22
chr161579459015794719+intron-Distal3.4800212.30326K562UPF1
chr161579526415795330+intron-Distal4.280863.73926K562RBM15
chr161579292415792987+intron-Distal3.021443.09748HepG2ILF3
chr161579924415799319+intron-Distal3.198914.70352K562SLTM
chr161579453215794617+intron-Distal3.745486.66717K562AKAP1
chr161575875515758807+intron-Proximal3.124844.77458HepG2RBM22
chr161577182315771856+intron-Proximal3.870157.16374K562AQR
chr161575875515758771+intron-Proximal4.271675.22198HepG2EFTUD2
chr161575877115758804+intron-Proximal3.968186.10859HepG2EFTUD2
chr161578522715785278+intron-Proximal3.481345.34337K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NDE1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NDE1 is not available on ENCORE database.

  • 124 RBPs can affect the levels of NDE1.  








The Knockdown/knockout RNA-Seq assay for NDE1 is not available on ENCORE database.





124 RBPs can affect the gene expression of NDE1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NDE1ENSG00000072864.81376.76270867.989000.665408.308506.56600HepG2AATF
NDE1ENSG00000072864.81017.043901783.63810-0.8104010.982709.31030HepG2ABCF1
NDE1ENSG00000072864.82221.715101371.714900.6956020.8613019.54000HepG2ACO1
NDE1ENSG00000072864.8783.106301303.74180-0.735408.920207.25560HepG2ADAR
NDE1ENSG00000072864.84586.946501402.178501.7098040.5749038.87790HepG2AKAP1
NDE1ENSG00000072864.82463.000401874.653600.393702.876601.81920HepG2AKAP8
NDE1ENSG00000072864.8590.325201378.22470-1.2232039.1052036.77070HepG2AKAP8L
NDE1ENSG00000072864.8879.383101160.15260-0.399802.772801.98790HepG2ASCC1
NDE1ENSG00000072864.81245.125801608.89190-0.369803.684602.07820HepG2ATP5C1
NDE1ENSG00000072864.82432.400501849.729100.395006.755405.75660HepG2AUH
NDE1ENSG00000072864.8684.558701018.53480-0.573204.312403.14110HepG2BCCIP
NDE1ENSG00000072864.8550.49570884.99990-0.684906.061404.78950HepG2BCLAF1
NDE1ENSG00000072864.81820.876101361.448400.419405.273404.25080HepG2CALR
NDE1ENSG00000072864.8622.430301102.23530-0.824409.669308.29830HepG2CIRBP
NDE1ENSG00000072864.8910.788501371.49510-0.5906012.8124011.59200HepG2CKAP4
NDE1ENSG00000072864.81990.621601468.396900.438904.603503.20290HepG2CPSF7
NDE1ENSG00000072864.8899.464401336.97120-0.571808.793107.00880HepG2YBX3
NDE1ENSG00000072864.8368.53950629.10290-0.771507.492405.84820HepG2CSTF2
NDE1ENSG00000072864.82102.228901582.446300.409706.504005.59750HepG2CELF1
NDE1ENSG00000072864.8788.261101268.67580-0.6866016.1060014.47280HepG2DDX19B
NDE1ENSG00000072864.8575.00530958.13970-0.736708.955007.80710HepG2DDX21
NDE1ENSG00000072864.8583.95470937.21160-0.682508.550106.96170HepG2DDX24
NDE1ENSG00000072864.85074.588203365.320200.592403.042701.68680HepG2DDX47
NDE1ENSG00000072864.81468.600801001.445400.552304.243703.30730HepG2DDX55
NDE1ENSG00000072864.82039.368801310.617600.637803.630302.51360HepG2DDX59
NDE1ENSG00000072864.81036.222101538.51890-0.570206.090304.64700HepG2DDX5
NDE1ENSG00000072864.84324.787501153.924001.9060049.4380047.32150HepG2DDX6
NDE1ENSG00000072864.8755.558501312.37970-0.7966017.3110015.94470HepG2DKC1
NDE1ENSG00000072864.81534.022901312.803700.224602.029401.41720HepG2DNAJC21
NDE1ENSG00000072864.81072.831801301.21390-0.278403.474102.75770HepG2DNAJC2
NDE1ENSG00000072864.8840.515201249.88630-0.572505.401604.15070HepG2EEF2
NDE1ENSG00000072864.81445.819201014.565800.510904.537303.40020HepG2EIF3D
NDE1ENSG00000072864.8626.52550904.54020-0.529805.541004.08570HepG2EIF3G
NDE1ENSG00000072864.8595.209601225.64370-1.0421013.1401011.77040HepG2EIF4A3
NDE1ENSG00000072864.81212.675501608.02490-0.407103.492002.58540HepG2EIF4G2
NDE1ENSG00000072864.8910.293601544.78250-0.7630011.094509.15130HepG2ESF1
NDE1ENSG00000072864.81332.91740912.862100.546006.141604.55200HepG2FASTKD2
NDE1ENSG00000072864.82765.356501800.949000.618605.870104.79040HepG2FIP1L1
NDE1ENSG00000072864.8504.89760833.53670-0.723306.285604.45090HepG2FKBP4
NDE1ENSG00000072864.8547.153401156.12890-1.079305.709004.25360HepG2FTO
NDE1ENSG00000072864.81213.03130772.403700.651107.916906.62260HepG2FUBP3
NDE1ENSG00000072864.81618.330001236.860700.387702.874502.16900HepG2FXR1
NDE1ENSG00000072864.8869.965501218.11060-0.485604.046002.96060HepG2G3BP2
NDE1ENSG00000072864.8537.73720903.32100-0.748307.865906.39010HepG2GEMIN5
NDE1ENSG00000072864.8779.191901308.30660-0.747707.703506.66940HepG2GPKOW
NDE1ENSG00000072864.81530.908201040.863400.556503.390701.64090HepG2GTF2F1
NDE1ENSG00000072864.82190.445201309.642600.7420021.0827018.83080HepG2HDGF
NDE1ENSG00000072864.8613.541001325.38070-1.1112020.4163018.93760HepG2HNRNPA1
NDE1ENSG00000072864.8554.095501474.24190-1.4118031.6318029.58720HepG2HNRNPC
NDE1ENSG00000072864.8730.623201248.54170-0.773009.098108.02990HepG2HNRNPLL
NDE1ENSG00000072864.8864.432801464.49510-0.7606018.2858016.82980HepG2HNRNPU
NDE1ENSG00000072864.81165.848101463.20200-0.327703.063502.30390HepG2IGF2BP1
NDE1ENSG00000072864.81260.435602463.35700-0.9667012.0781010.35050HepG2LARP4
NDE1ENSG00000072864.81460.613601063.814700.457204.667303.19190HepG2LARP7
NDE1ENSG00000072864.8827.199601117.12010-0.433503.426402.06950HepG2LIN28B
NDE1ENSG00000072864.8975.344601237.29350-0.343202.199701.61240HepG2MAGOH
NDE1ENSG00000072864.8800.190601244.17990-0.636805.528904.66160HepG2MATR3
NDE1ENSG00000072864.81466.769001061.789800.466002.383101.40310HepG2METAP2
NDE1ENSG00000072864.8817.519201273.36560-0.639304.063802.87910HepG2MTPAP
NDE1ENSG00000072864.8914.851601273.45590-0.477103.588302.87130HepG2NCBP2
NDE1ENSG00000072864.8720.91150961.92300-0.416103.084501.59090HepG2NIP7
NDE1ENSG00000072864.82126.248401687.165700.333603.952703.04070HepG2NOL12
NDE1ENSG00000072864.8704.135201107.07610-0.652806.695905.55830HepG2NSUN2
NDE1ENSG00000072864.84435.618002345.270900.919306.971905.52030HepG2PABPC1
NDE1ENSG00000072864.81423.072701141.835300.317603.898903.20430HepG2PCBP1
NDE1ENSG00000072864.8930.401401306.21240-0.489506.818705.70260HepG2PPIL4
NDE1ENSG00000072864.8888.615301370.88330-0.625508.419407.17120HepG2PRPF4
NDE1ENSG00000072864.8503.34370772.45970-0.617904.954403.90750HepG2PRPF8
NDE1ENSG00000072864.81545.125801161.900900.411106.167905.41420HepG2PTBP1
NDE1ENSG00000072864.8797.006301610.56390-1.0149019.9198018.51500HepG2PUF60
NDE1ENSG00000072864.8795.055901397.19210-0.8134021.4074019.98860HepG2PUS1
NDE1ENSG00000072864.81572.107901258.280500.321103.324102.64840HepG2QKI
NDE1ENSG00000072864.82608.487501008.704901.3706014.6862013.18280HepG2RAVER1
NDE1ENSG00000072864.83072.814601793.715200.7765018.3392016.46510HepG2RBM15
NDE1ENSG00000072864.81221.141201775.08900-0.539708.994408.18230HepG2RBM22
NDE1ENSG00000072864.8838.975201282.77240-0.612606.118104.63260HepG2RBM27
NDE1ENSG00000072864.8794.723901041.66630-0.390402.293301.32960HepG2RCC2
NDE1ENSG00000072864.8525.04870991.03510-0.916507.392905.90990HepG2RPS10
NDE1ENSG00000072864.8489.71820987.28290-1.0115016.9166015.58310HepG2RPS19
NDE1ENSG00000072864.8657.434401183.08330-0.8476010.725709.23430HepG2RPS2
NDE1ENSG00000072864.8669.874502578.29910-1.944507.596706.28860HepG2RPS3A
NDE1ENSG00000072864.8920.544501207.64200-0.391602.782401.70650HepG2RPS5
NDE1ENSG00000072864.81093.97060764.115200.517603.703402.81130HepG2RRP9
NDE1ENSG00000072864.8884.490501235.80560-0.482504.436703.56210HepG2SF3B1
NDE1ENSG00000072864.81153.304501544.31960-0.421205.699404.75360HepG2SLBP
NDE1ENSG00000072864.81312.585601520.91330-0.212502.497801.88210HepG2SMN1
NDE1ENSG00000072864.81510.377501029.024300.553503.864802.71670HepG2SMNDC1
NDE1ENSG00000072864.8947.900701375.05180-0.536703.170702.33220HepG2SNRNP70
NDE1ENSG00000072864.83977.744502004.875200.9883038.2059036.90500HepG2SRFBP1
NDE1ENSG00000072864.81316.401001590.22050-0.272602.968002.32140HepG2SRSF5
NDE1ENSG00000072864.82452.772201027.223501.2556061.8972059.98840HepG2SRSF9
NDE1ENSG00000072864.8753.489201740.66710-1.2080045.6359044.16740HepG2SSB
NDE1ENSG00000072864.81653.58030942.685700.810606.730204.89340HepG2SUB1
NDE1ENSG00000072864.8731.04030996.90190-0.447502.978302.28030HepG2SUPV3L1
NDE1ENSG00000072864.81393.854401134.962900.296303.106002.51680HepG2TAF15
NDE1ENSG00000072864.8751.766501216.96030-0.694908.164607.00670HepG2TARDBP
NDE1ENSG00000072864.8699.033601997.53970-1.5148012.5763010.50550HepG2TBRG4
NDE1ENSG00000072864.81868.732601042.788500.841507.607206.23520HepG2TIA1
NDE1ENSG00000072864.8576.134401423.02720-1.3045034.6512033.24270HepG2TIAL1
NDE1ENSG00000072864.81105.978301573.48440-0.508606.111904.74480HepG2TUFM
NDE1ENSG00000072864.81139.446501540.35050-0.434904.166003.40250HepG2U2AF1
NDE1ENSG00000072864.82436.612201665.529300.548805.317304.13850HepG2UBE2L3
NDE1ENSG00000072864.8747.537601047.13480-0.486203.184002.44500HepG2UPF1
NDE1ENSG00000072864.8565.56210912.79990-0.690604.865003.51380HepG2UPF2
NDE1ENSG00000072864.8677.950301076.26360-0.666805.541104.10360HepG2UTP18
NDE1ENSG00000072864.81570.56150992.082100.662604.850803.16590HepG2XRCC5
NDE1ENSG00000072864.8615.59100981.34120-0.672806.336705.25480HepG2XRN2
NDE1ENSG00000072864.8600.940101007.95730-0.746106.017904.01140HepG2ZRANB2
NDE1ENSG00000072864.81457.485401169.231200.317803.610702.97800K562AGGF1
NDE1ENSG00000072864.81060.61930807.368400.393502.888701.82460K562DDX3X
NDE1ENSG00000072864.8743.616901230.52610-0.7266014.7790013.38750K562DDX47
NDE1ENSG00000072864.81052.00610807.419900.381703.961903.12500K562EIF2S2
NDE1ENSG00000072864.8302.08780492.30400-0.704603.490702.34830K562EIF3A
NDE1ENSG00000072864.8465.60340704.90040-0.598304.141002.84440K562EIF3D
NDE1ENSG00000072864.8652.37610877.23820-0.427304.251703.52460K562FXR1
NDE1ENSG00000072864.81099.13090826.728300.410803.661101.97620K562G3BP1
NDE1ENSG00000072864.8552.80090735.35760-0.411702.135001.52570K562G3BP2
NDE1ENSG00000072864.8803.079001075.87680-0.421903.631602.76930K562GRSF1
NDE1ENSG00000072864.8504.63720721.61940-0.516004.294303.56740K562HNRNPC
NDE1ENSG00000072864.8618.41420863.57660-0.481803.621002.18590K562HNRNPK
NDE1ENSG00000072864.81195.90090864.932400.467303.177802.05250K562IGF2BP2
NDE1ENSG00000072864.8587.43750808.54770-0.460903.584402.47380K562PCBP2
NDE1ENSG00000072864.8835.592901145.05440-0.454503.294002.38710K562PCBP3
NDE1ENSG00000072864.8610.66380878.30740-0.524305.555104.42190K562POLR2G
NDE1ENSG00000072864.8411.20180640.76250-0.639905.115004.09620K562PRPF8
NDE1ENSG00000072864.81266.548101586.28820-0.324803.142402.27540K562PUF60
NDE1ENSG00000072864.81788.441401206.478100.567806.594905.79830K562PUS1
NDE1ENSG00000072864.81479.947601175.620700.332003.674503.00500K562RBM15
NDE1ENSG00000072864.8394.10640652.60650-0.727605.629104.46080K562RPS19
NDE1ENSG00000072864.8750.278301127.82820-0.588005.092503.67610K562RPS3
NDE1ENSG00000072864.8683.26180880.94910-0.366602.967702.11460K562SYNCRIP
NDE1ENSG00000072864.8559.51280735.74550-0.395002.126901.42300K562U2AF2
NDE1ENSG00000072864.81257.11020963.525500.383602.826301.94000K562WDR3
NDE1ENSG00000072864.81697.052001369.711800.309102.770001.47960K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NDE1 is not available on ENCORE database.





13 RBPs can affect the splicing of NDE1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENDE1ENSG00000072864.8chr16+157935851579369915790565157907171581804715820210-0.290000.004550.08921excludedHepG2HNRNPK
SENDE1ENSG00000072864.8chr16+157935851579369915790565157907171581804715820210-0.228000.001940.09394excludedHepG2AKAP1
SENDE1ENSG00000072864.8chr16+157935851579371115790565157907171581804715818079-0.324000.000400.02941excludedHepG2NCBP2
SENDE1ENSG00000072864.8chr16+157935851579371115790565157907171581804715818079-0.282000.000340.02219excludedHepG2PTBP1
SENDE1ENSG00000072864.8chr16+157935851579371115790565157907171581804715818079-0.244000.001960.07955excludedHepG2PCBP1
SENDE1ENSG00000072864.8chr16+157935851579371115790565157907171581804715818079-0.429000.000790.03743excludedK562HNRNPK
A3SSNDE1ENSG00000072864.8chr16+1579345315793699157935851579369915790565157907170.397000.000000.00002longerHepG2HNRNPK
MXENDE1ENSG00000072864.8chr16+1578802115788113157905651579071715785098157851801579358515793711-0.158000.001330.071012includedK562LARP4
MXENDE1ENSG00000072864.8chr16+15785000157851801578802115788113157812311578136815790565157907170.109000.000090.034201includedHepG2EIF3H
MXENDE1ENSG00000072864.8chr16+15788021157881131579056515790717157850981578518015793585157937110.202000.000110.006751includedHepG2PTBP1
MXENDE1ENSG00000072864.8chr16+1578802115788113157905651579071715785000157851801581804715820210-0.116000.000640.013612includedK562DROSHA
MXENDE1ENSG00000072864.8chr16+1578802115788113157905651579071715785098157851801579358515793711-0.208000.000030.001282includedK562DROSHA
MXENDE1ENSG00000072864.8chr16+1578123115781368157850001578518015771781157718061578802115788113-0.265000.000810.056722includedHepG2NOLC1
MXENDE1ENSG00000072864.8chr16+15788021157881131579056515790717157850981578518015793585157937110.220000.005440.032601includedHepG2U2AF2
MXENDE1ENSG00000072864.8chr16+1578123115781368157850001578518015771781157718061578802115788113-0.153000.018840.088722includedHepG2U2AF2
MXENDE1ENSG00000072864.8chr16+15788021157881131579056515790717157850981578518015793585157937110.190000.000280.012531includedHepG2PCBP1
MXENDE1ENSG00000072864.8chr16+1578500015785180157880211578811315781231157813681579056515790717-0.132000.000650.036362includedHepG2DROSHA
MXENDE1ENSG00000072864.8chr16+1578123115781368157850001578518015771781157718061578802115788113-0.185000.001800.047152includedK562SBDS
MXENDE1ENSG00000072864.8chr16+15788021157881131579056515790717157850981578518015793585157937110.174000.003600.083121includedHepG2HNRNPU
MXENDE1ENSG00000072864.8chr16+15788021157881131579056515790717157850981578518015793585157937110.200000.000830.023781includedHepG2HNRNPK
MXENDE1ENSG00000072864.8chr16+1578802115788113157905651579071715785000157851801579345315793787-0.130000.000770.022442includedHepG2HNRNPK
MXENDE1ENSG00000072864.8chr16+15788021157881131579056515790717157850001578518015818047158202100.163000.000270.013921includedHepG2HNRNPL

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NDE1 is not avaliable on ENCORE database.