GADD45B

General Information

Gene Name       : GADD45B
Gene ID             : ENSG00000099860.8
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: GADD45B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GADD45BENSG00000099860.87.8222.9215.37ENCSR000AEF
HepG2GADD45BENSG00000099860.86.292.414.35ENCSR985KAT
K562GADD45BENSG00000099860.80.740.530.64ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GADD45B is not avaliable on ENCORE database.



Proteins bound to RNA
  • GADD45B RNA is bound by 6 proteins.  







eCLIP assay for GADD45B is not avaliable on ENCORE database.





6 proteins are bound to GADD45B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1924777582477908+3'-UTR3.504144.14074K562UPF1
chr1924772142477300+3'-UTR,CDS,intron-Proximal4.389947.13970HepG2PRPF8
chr1924777202477828+3'-UTR4.491214.81659HepG2UPF1
chr1924777332477840+3'-UTR4.610063.19379HepG2AKAP1
chr1924762082476291+5'-UTR4.892303.81597K562RBM15
chr1924764252476480+5'-UTR,intron-Proximal4.060113.48187K562RBM15
chr1924761852476356+5'-UTR4.804816.10084K562SRSF1
chr1924767082476776+intron-Distal,intron-Proximal4.017803.18939HepG2RBFOX2
chr1924766442476751+intron-Distal,intron-Proximal5.114147.58908K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GADD45B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GADD45B is not available on ENCORE database.

  • 108 RBPs can affect the levels of GADD45B.  








The Knockdown/knockout RNA-Seq assay for GADD45B is not available on ENCORE database.





108 RBPs can affect the gene expression of GADD45B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GADD45BENSG00000099860.4583.84860277.770701.071609.105708.20310HepG2AKAP1
GADD45BENSG00000099860.4309.43680228.802500.435402.328301.68960HepG2AUH
GADD45BENSG00000099860.4103.82640218.33690-1.072402.868102.08150HepG2CIRBP
GADD45BENSG00000099860.4201.80440423.69340-1.070102.278901.58940HepG2CNOT7
GADD45BENSG00000099860.4147.0670089.403600.718002.125501.51400HepG2CPSF6
GADD45BENSG00000099860.4341.50340206.390000.726404.134202.79640HepG2CPSF7
GADD45BENSG00000099860.4285.97740119.365501.2604012.4905011.31550HepG2CELF1
GADD45BENSG00000099860.4173.6405079.210201.132204.651503.67720HepG2DDX55
GADD45BENSG00000099860.4215.52380101.525701.085904.615403.36400HepG2DDX59
GADD45BENSG00000099860.4922.48090228.669302.0122034.4725032.64980HepG2DDX6
GADD45BENSG00000099860.4282.29960200.024700.496902.675302.00820HepG2DKC1
GADD45BENSG00000099860.478.79220145.84350-0.888303.614502.33550HepG2EFTUD2
GADD45BENSG00000099860.4455.72550219.671801.052705.611104.78330HepG2EIF2S1
GADD45BENSG00000099860.4179.09720121.292600.562202.140101.41810HepG2EIF4G2
GADD45BENSG00000099860.4392.03930262.701800.577504.548103.81210HepG2ETF1
GADD45BENSG00000099860.4403.92810253.244200.673502.138701.45810HepG2FIP1L1
GADD45BENSG00000099860.457.80940105.53410-0.868302.523201.45480HepG2FUS
GADD45BENSG00000099860.4125.81460245.08760-0.962002.516101.85490HepG2FXR1
GADD45BENSG00000099860.478.11250241.39520-1.627804.677203.50590HepG2G3BP2
GADD45BENSG00000099860.476.63140126.45160-0.722602.504701.65690HepG2GEMIN5
GADD45BENSG00000099860.4184.9392088.985901.055305.212603.80860HepG2GNB2L1
GADD45BENSG00000099860.4274.21730199.582200.458202.590801.63980HepG2HDGF
GADD45BENSG00000099860.4298.55640143.075101.061109.890908.64060HepG2HNRNPF
GADD45BENSG00000099860.4371.60440230.373500.689701.921201.33340HepG2HNRNPK
GADD45BENSG00000099860.4221.29410116.898800.920606.560905.56690HepG2HNRNPL
GADD45BENSG00000099860.4292.93310543.37080-0.891406.775904.88820HepG2HSPD1
GADD45BENSG00000099860.4314.98030140.887701.1606010.738809.40330HepG2IGF2BP1
GADD45BENSG00000099860.4297.63710191.094800.639204.739203.41290HepG2KIF1C
GADD45BENSG00000099860.4264.16180542.90780-1.039308.112106.00620HepG2KRR1
GADD45BENSG00000099860.4322.39710223.344700.529502.278601.53120HepG2LARP4
GADD45BENSG00000099860.485.31210245.17420-1.523004.383003.56020HepG2MAGOH
GADD45BENSG00000099860.4136.98900246.50990-0.847601.833901.31500HepG2MATR3
GADD45BENSG00000099860.4128.98710204.79870-0.667002.305301.56390HepG2MSI2
GADD45BENSG00000099860.4324.42390172.008600.915306.679204.81430HepG2NAA15
GADD45BENSG00000099860.4211.38930127.256700.732104.074703.14930HepG2NOL12
GADD45BENSG00000099860.4140.0434085.757100.707402.257401.58020HepG2NSUN2
GADD45BENSG00000099860.496.26230235.38860-1.2900010.602709.53860HepG2PCBP1
GADD45BENSG00000099860.4316.68120198.807800.671604.154602.05270HepG2PES1
GADD45BENSG00000099860.4790.37840380.097001.056103.087601.48120HepG2PNPT1
GADD45BENSG00000099860.4148.7618086.820000.776803.413202.60180HepG2PPIL4
GADD45BENSG00000099860.4127.46990239.53330-0.910104.311803.66200HepG2PTBP1
GADD45BENSG00000099860.469.70020121.48120-0.801502.619502.03720HepG2PUF60
GADD45BENSG00000099860.4196.77480128.961900.609503.158202.53440HepG2PUM1
GADD45BENSG00000099860.4199.14930128.865100.627902.851702.17160HepG2PUM2
GADD45BENSG00000099860.481.17420212.96070-1.391509.112108.10160HepG2PUS1
GADD45BENSG00000099860.4244.0204096.397601.339806.441005.39050HepG2RAVER1
GADD45BENSG00000099860.4533.33540272.350000.9695011.510009.94600HepG2RBM15
GADD45BENSG00000099860.4299.74580219.568800.449002.395301.90370HepG2RBM22
GADD45BENSG00000099860.4487.56820266.563800.871009.411708.52110HepG2NELFE
GADD45BENSG00000099860.4437.86730154.133701.506207.707406.65540HepG2RPLP0
GADD45BENSG00000099860.4177.3145098.970100.841103.470102.26320HepG2RPS5
GADD45BENSG00000099860.4110.8931060.450500.875202.471401.72450HepG2RRP9
GADD45BENSG00000099860.4836.68570191.715802.1256024.6278022.56790HepG2SF3A3
GADD45BENSG00000099860.4169.0389095.714700.820403.336202.56870HepG2SF3B1
GADD45BENSG00000099860.4195.58610116.490200.747504.195003.35660HepG2SLBP
GADD45BENSG00000099860.4247.0766094.068601.393103.875801.99650HepG2SLTM
GADD45BENSG00000099860.4373.28040106.501601.8093014.5484012.77640HepG2SNRNP70
GADD45BENSG00000099860.41146.12350247.992702.2083087.8692086.06770HepG2SRFBP1
GADD45BENSG00000099860.477.20820260.28510-1.7533016.6640015.71090HepG2SRSF1
GADD45BENSG00000099860.4205.82690103.007000.998604.437203.14050HepG2SRSF3
GADD45BENSG00000099860.4177.75180119.950100.567302.512301.91180HepG2SRSF5
GADD45BENSG00000099860.4241.70970140.568100.781905.234504.32490HepG2SRSF7
GADD45BENSG00000099860.4504.78510211.766301.2531021.2830020.01580HepG2SRSF9
GADD45BENSG00000099860.4356.11390215.312600.725806.279705.56470HepG2SSB
GADD45BENSG00000099860.4296.15700169.003300.809204.043302.57280HepG2STAU1
GADD45BENSG00000099860.4175.9795090.088300.965903.304001.98370HepG2SUB1
GADD45BENSG00000099860.4329.03370170.864900.945304.288103.12890HepG2SUPT6H
GADD45BENSG00000099860.4370.5360078.854102.2323021.8033020.23180HepG2SUPV3L1
GADD45BENSG00000099860.453.0238094.28790-0.830402.179501.52470HepG2TARDBP
GADD45BENSG00000099860.4131.09270531.67720-2.0200016.2368013.94130HepG2TBRG4
GADD45BENSG00000099860.4109.2764052.854101.047803.643702.51920HepG2TFIP11
GADD45BENSG00000099860.4172.7633094.557800.869404.238303.64730HepG2TIAL1
GADD45BENSG00000099860.4231.4566095.433301.2781011.2734010.24850HepG2TRIM56
GADD45BENSG00000099860.4155.1923046.582601.7361010.864909.37390HepG2UCHL5
GADD45BENSG00000099860.4142.4232072.210200.979803.271602.17650HepG2UPF2
GADD45BENSG00000099860.4108.16780174.75300-0.692003.148402.03880HepG2UTP18
GADD45BENSG00000099860.4367.47300186.992000.9746011.1474010.23050HepG2ZNF622
GADD45BENSG00000099860.4175.6110038.274702.1978018.1020016.77290K562AGGF1
GADD45BENSG00000099860.4177.1860039.829502.1533010.374009.00370K562AKAP8L
GADD45BENSG00000099860.4987.5928037.686104.7117026.5622024.94290K562AQR
GADD45BENSG00000099860.444.6512015.853301.493802.822501.38970K562BUD13
GADD45BENSG00000099860.462.0078027.913201.151402.996101.42460K562CEBPZ
GADD45BENSG00000099860.483.3844044.906900.892702.820401.34170K562DDX19B
GADD45BENSG00000099860.474.3508042.841200.795202.252201.47300K562DKC1
GADD45BENSG00000099860.474.9611030.229401.310103.937503.10260K562EIF2S2
GADD45BENSG00000099860.472.1951024.191001.577304.008102.44640K562EXOSC5
GADD45BENSG00000099860.489.0077029.889601.574205.264804.07930K562FMR1
GADD45BENSG00000099860.458.1436025.335901.198302.554501.67840K562FTO
GADD45BENSG00000099860.470.3584028.041601.327102.724001.93530K562GPKOW
GADD45BENSG00000099860.4150.0691040.274601.897606.076604.95050K562GRSF1
GADD45BENSG00000099860.4148.8788052.514301.503305.480603.54350K562HNRNPA2B1
GADD45BENSG00000099860.439.1759013.813601.503802.427801.86410K562HNRNPC
GADD45BENSG00000099860.4159.4779056.513301.496604.651501.80850K562HNRNPUL1
GADD45BENSG00000099860.465.3780022.181401.559404.038903.08320K562HSPD1
GADD45BENSG00000099860.480.1336032.088001.320303.787701.60180K562IGF2BP1
GADD45BENSG00000099860.442.2424016.272201.376202.315401.40030K562IGF2BP2
GADD45BENSG00000099860.441.4922016.537201.327002.713701.53570K562IGF2BP3
GADD45BENSG00000099860.4126.5445042.258901.582206.092504.75960K562KIF1C
GADD45BENSG00000099860.4101.1511040.460401.321802.284201.33750K562MAK16
GADD45BENSG00000099860.478.8637027.372401.526504.811903.63640K562METAP2
GADD45BENSG00000099860.462.4941026.217901.253103.196302.32750K562MTPAP
GADD45BENSG00000099860.4100.7784033.184201.602505.840904.38860K562NAA15
GADD45BENSG00000099860.4217.9600029.127602.903503.776802.92060K562NSUN2
GADD45BENSG00000099860.4182.9938045.941701.993809.235107.05610K562PABPN1
GADD45BENSG00000099860.447.6171018.572501.358202.904102.06070K562PPIG
GADD45BENSG00000099860.4162.4880054.625901.572605.807403.45490K562PPP1R8
GADD45BENSG00000099860.467.6269016.930201.997905.177604.15230K562PRPF8
GADD45BENSG00000099860.439.2856012.386101.665202.982702.03840K562PSIP1
GADD45BENSG00000099860.4341.8666039.479203.1142041.9956039.82820K562PUS1
GADD45BENSG00000099860.4184.4130038.483702.260504.255303.53530K562RBM15
GADD45BENSG00000099860.481.2464015.883802.354609.955108.20780K562RBM22
GADD45BENSG00000099860.4187.8900056.521601.732905.886703.42620K562RBM39
GADD45BENSG00000099860.430.0982069.56410-1.208702.654501.67470K562RPS3
GADD45BENSG00000099860.476.9501028.745601.420504.671103.63460K562SF3A3
GADD45BENSG00000099860.489.3308026.674601.743605.730804.29770K562SF3B1
GADD45BENSG00000099860.4137.9611048.249901.515605.125003.28280K562SNRNP200
GADD45BENSG00000099860.464.0986028.620501.163103.222001.95350K562SRSF7
GADD45BENSG00000099860.455.8019019.633501.506903.405201.98830K562STAU1
GADD45BENSG00000099860.470.8403026.229901.433303.961402.51580K562UTP3
GADD45BENSG00000099860.4139.3143056.786901.294603.299701.52050K562YTHDC2
GADD45BENSG00000099860.480.1465042.448900.916802.596301.76550K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GADD45B is not available on ENCORE database.






No RBPs affect the alternative splcing events of GADD45B on ENCORE database.





The Knockdown/knockout RNA-Seq assay for GADD45B is not avaliable on ENCORE database.