SNAPC1

General Information

Gene Name       : SNAPC1
Gene ID             : ENSG00000023608.4
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SNAPC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNAPC1ENSG00000023608.46.045.395.71ENCSR000AEF
HepG2SNAPC1ENSG00000023608.43.667.235.45ENCSR985KAT
K562SNAPC1ENSG00000023608.45.535.345.44ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNAPC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNAPC1 RNA is bound by 6 proteins.  







eCLIP assay for SNAPC1 is not avaliable on ENCORE database.





6 proteins are bound to SNAPC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr146226190162262032+3'-UTR4.173744.96658K562KHSRP
chr146226166662261724+3'-UTR,CDS,intron-Proximal3.670813.17151K562UCHL5
chr146226220062262295+3'-UTR4.054054.04290K562CSTF2T
chr146226258462262708+3'-UTR3.002624.48738K562UPF1
chr146222915662229291+5'-UTR,CDS,intron-Distal4.029497.63469K562DDX3X
chr146222917662229358+5'-UTR,CDS,intron-Distal,intron-Proximal4.683714.35676HepG2PRPF8
chr146224906362249118+CDS,intron-Proximal4.318783.36385K562UCHL5
chr146223538962235448+CDS3.204374.61143K562UCHL5
chr146225917562259289+intron-Distal3.889803.24603K562KHSRP
chr146224261562242679+intron-Distal3.152834.08064K562KHSRP
chr146224456862244690+intron-Distal4.651656.94732K562KHSRP
chr146224267962242750+intron-Distal,intron-Proximal4.353694.54401K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNAPC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNAPC1 is not available on ENCORE database.

  • 78 RBPs can affect the levels of SNAPC1.  








The Knockdown/knockout RNA-Seq assay for SNAPC1 is not available on ENCORE database.





78 RBPs can affect the gene expression of SNAPC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNAPC1ENSG00000023608.4140.96190227.94030-0.693402.272001.41360HepG2ABCF1
SNAPC1ENSG00000023608.4266.71570151.376500.817106.177605.34220HepG2ACO1
SNAPC1ENSG00000023608.4343.20200248.482900.465801.822401.38090HepG2AKAP1
SNAPC1ENSG00000023608.4183.29170334.23010-0.866705.914204.97230HepG2AUH
SNAPC1ENSG00000023608.4209.18710376.80460-0.849003.651602.51640HepG2CCAR1
SNAPC1ENSG00000023608.4126.92370219.15450-0.788003.804303.01070HepG2CPSF6
SNAPC1ENSG00000023608.497.60790187.76340-0.943804.567003.17240HepG2CPSF7
SNAPC1ENSG00000023608.4176.31960286.95670-0.702604.443803.53940HepG2DAZAP1
SNAPC1ENSG00000023608.472.68780153.49450-1.078402.955601.51650HepG2DDX28
SNAPC1ENSG00000023608.4159.71360238.01590-0.575602.350101.76860HepG2DDX3X
SNAPC1ENSG00000023608.4132.04600203.41640-0.623402.733201.72640HepG2DDX5
SNAPC1ENSG00000023608.4376.75050204.488700.881505.606104.75410HepG2DDX6
SNAPC1ENSG00000023608.4101.65890163.43300-0.685002.727801.74900HepG2DHX30
SNAPC1ENSG00000023608.487.61330169.44960-0.951605.053004.12820HepG2DNAJC21
SNAPC1ENSG00000023608.461.98360167.94900-1.4381010.458009.28890HepG2DNAJC2
SNAPC1ENSG00000023608.481.86240196.55210-1.263607.013206.10040HepG2EIF2S1
SNAPC1ENSG00000023608.4103.36640217.19970-1.071305.862704.93330HepG2EIF4A3
SNAPC1ENSG00000023608.4142.33050271.12820-0.929705.467604.34380HepG2EIF4G2
SNAPC1ENSG00000023608.4128.32150203.30580-0.663902.731102.06910HepG2G3BP1
SNAPC1ENSG00000023608.4105.05440248.43040-1.241707.643006.61290HepG2GPKOW
SNAPC1ENSG00000023608.481.89020171.07290-1.062804.966004.13370HepG2HNRNPA1
SNAPC1ENSG00000023608.476.83060190.28560-1.308407.307206.22190HepG2HNRNPC
SNAPC1ENSG00000023608.4135.51290215.86960-0.671703.481702.68510HepG2HNRNPF
SNAPC1ENSG00000023608.493.68470237.08150-1.339508.635407.58880HepG2HNRNPLL
SNAPC1ENSG00000023608.4115.38010189.02760-0.712203.688202.99830HepG2HNRNPU
SNAPC1ENSG00000023608.4119.89800212.57170-0.826104.567803.65690HepG2IGF2BP1
SNAPC1ENSG00000023608.4113.68060206.64830-0.862204.107603.29990HepG2IGF2BP2
SNAPC1ENSG00000023608.4117.25000193.08570-0.719704.124703.24720HepG2ILF2
SNAPC1ENSG00000023608.4264.51030397.59970-0.588002.493801.70670HepG2LARP4
SNAPC1ENSG00000023608.4133.94810225.67160-0.752603.389602.69150HepG2NCBP2
SNAPC1ENSG00000023608.4162.21860284.54060-0.810705.955404.83900HepG2NOL12
SNAPC1ENSG00000023608.4142.24750210.21690-0.563502.078201.42530HepG2NSUN2
SNAPC1ENSG00000023608.4393.09980192.442801.030406.385004.12970HepG2PNPT1
SNAPC1ENSG00000023608.4105.54430207.37640-0.974405.796705.06360HepG2PTBP1
SNAPC1ENSG00000023608.4190.07420271.59250-0.514902.708502.11780HepG2PUF60
SNAPC1ENSG00000023608.4208.67000288.27640-0.466202.902002.29800HepG2PUM1
SNAPC1ENSG00000023608.4195.01730288.08510-0.562902.473701.83970HepG2PUM2
SNAPC1ENSG00000023608.484.75320154.17950-0.863304.315403.57730HepG2PUS1
SNAPC1ENSG00000023608.4249.43590154.774400.688402.323201.67350HepG2RAVER1
SNAPC1ENSG00000023608.4326.82090226.732900.527403.028702.13430HepG2RBM15
SNAPC1ENSG00000023608.4161.25810320.71710-0.991907.917507.14550HepG2RBM22
SNAPC1ENSG00000023608.4136.84120215.45810-0.654902.569001.79800HepG2RPS3A
SNAPC1ENSG00000023608.4172.64580260.35130-0.592603.875903.06690HepG2SLBP
SNAPC1ENSG00000023608.497.72560196.31230-1.006306.590905.66350HepG2SMN1
SNAPC1ENSG00000023608.4481.69400362.249500.411003.169002.64480HepG2SRFBP1
SNAPC1ENSG00000023608.4137.88380212.07860-0.621102.434901.77900HepG2SRSF7
SNAPC1ENSG00000023608.4158.82100314.53810-0.985808.931208.11170HepG2SSB
SNAPC1ENSG00000023608.4298.02790188.730600.659003.458302.04080HepG2SSRP1
SNAPC1ENSG00000023608.4278.80390187.412800.572902.611601.54700HepG2STIP1
SNAPC1ENSG00000023608.4103.23020155.46360-0.590702.198301.35610HepG2SUPT6H
SNAPC1ENSG00000023608.4277.79450202.561700.455602.223201.71140HepG2TAF15
SNAPC1ENSG00000023608.4104.58660231.07670-1.143707.036605.95280HepG2TARDBP
SNAPC1ENSG00000023608.492.08430183.68100-0.996205.541004.88190HepG2TIAL1
SNAPC1ENSG00000023608.4103.99910164.80150-0.664202.842502.13560HepG2UPF1
SNAPC1ENSG00000023608.4107.49340198.47960-0.884702.216801.56190HepG2XRN2
SNAPC1ENSG00000023608.485.01240171.70240-1.014205.895804.97180HepG2ZC3H8
SNAPC1ENSG00000023608.4132.81960181.24960-0.448501.828901.35910HepG2ZNF622
SNAPC1ENSG00000023608.4277.18390154.566900.842504.544902.85290HepG2ZRANB2
SNAPC1ENSG00000023608.4548.70940375.838600.545804.023803.36270K562AGGF1
SNAPC1ENSG00000023608.4417.17510543.85580-0.382602.639501.43040K562APOBEC3C
SNAPC1ENSG00000023608.4544.09330293.695800.889407.868606.36710K562BOP1
SNAPC1ENSG00000023608.473.72950129.15570-0.808802.876001.79800K562CCAR1
SNAPC1ENSG00000023608.4643.68410440.961900.545604.458502.57870K562DDX19B
SNAPC1ENSG00000023608.4239.61660330.35380-0.463302.496701.50960K562DDX3X
SNAPC1ENSG00000023608.4575.39720420.806900.451303.990002.91280K562DKC1
SNAPC1ENSG00000023608.4138.55270206.04380-0.572502.220001.40240K562EFTUD2
SNAPC1ENSG00000023608.468.34290131.37590-0.942802.647701.66930K562EIF3A
SNAPC1ENSG00000023608.4196.07290265.62390-0.438002.195701.48110K562EIF3G
SNAPC1ENSG00000023608.4233.41100345.14540-0.564303.345902.44820K562EIF4A3
SNAPC1ENSG00000023608.4215.18350310.82910-0.530603.316402.02730K562EIF4B
SNAPC1ENSG00000023608.4472.33580616.39480-0.384002.484501.59050K562EIF4G2
SNAPC1ENSG00000023608.4372.49530269.367800.467502.303101.47320K562FTO
SNAPC1ENSG00000023608.4177.41960358.93790-1.016609.899208.83770K562FXR1
SNAPC1ENSG00000023608.4100.54780271.85520-1.4350011.6698010.51720K562HNRNPC
SNAPC1ENSG00000023608.4579.76610415.021100.482203.408602.48080K562KIF1C
SNAPC1ENSG00000023608.4255.22820337.85780-0.404602.369201.62060K562MTPAP
SNAPC1ENSG00000023608.4567.64000325.883700.800503.493902.47630K562NAA15
SNAPC1ENSG00000023608.4479.97460674.33230-0.490503.464501.77370K562NOL12
SNAPC1ENSG00000023608.4165.00000243.73940-0.562902.312101.49150K562PSIP1
SNAPC1ENSG00000023608.4104.42570462.64580-2.147409.696208.50780K562PTBP1
SNAPC1ENSG00000023608.4281.55520387.81740-0.462002.142101.65200K562PUS1
SNAPC1ENSG00000023608.4494.27490377.892500.387202.263001.71770K562RBM15
SNAPC1ENSG00000023608.4280.26380409.36470-0.546603.521701.59270K562RECQL
SNAPC1ENSG00000023608.4174.16770297.76920-0.773704.040002.80050K562RPS3
SNAPC1ENSG00000023608.4230.63350440.72610-0.934305.866603.27630K562SMN1
SNAPC1ENSG00000023608.4255.44730453.49610-0.828102.814202.10230K562SRSF1
SNAPC1ENSG00000023608.4582.60060366.177400.669905.443203.49500K562SSRP1
SNAPC1ENSG00000023608.4190.11870459.07750-1.271804.620603.70020K562TARDBP
SNAPC1ENSG00000023608.4272.82230442.80330-0.698702.210201.48530K562TIA1
SNAPC1ENSG00000023608.4359.21860554.80580-0.627104.441102.79610K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNAPC1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SNAPC1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SNAPC1 is not avaliable on ENCORE database.