TRO

General Information

Gene Name       : TRO
Gene ID             : ENSG00000067445.20
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRO)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TROENSG00000067445.200.000.010.01ENCSR000AEF
HepG2TROENSG00000067445.2013.4616.9715.21ENCSR985KAT
K562TROENSG00000067445.200.530.890.71ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRO is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRO RNA is bound by 10 proteins.  







eCLIP assay for TRO is not avaliable on ENCORE database.





10 proteins are bound to TRO RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX5495725254957334+3'-UTR,CDS,intron-Distal4.103593.97409HepG2LSM11
chrX5494909354949178+3'-UTR,CDS,intron-Distal3.226343.34920HepG2HLTF
chrX5495720454957354+3'-UTR,CDS,intron-Distal3.529384.77549HepG2PABPN1
chrX5495092154950987+5'-UTR,CDS4.512273.33922HepG2EIF3H
chrX5495110554951164+5'-UTR,CDS5.054105.37137HepG2BCLAF1
chrX5495142954951466+CDS3.430563.28366HepG2BCLAF1
chrX5495420054954215+CDS,intron-Proximal3.630113.87469HepG2BCLAF1
chrX5495419654954214+CDS3.703126.70085HepG2PPIG
chrX5495301554953036+CDS,intron-Proximal3.665304.09885HepG2BCLAF1
chrX5495411454954219+CDS,intron-Proximal4.160436.46787HepG2GRWD1
chrX5495409954954134+CDS,intron-Proximal4.384413.79199HepG2PPIG
chrX5494939054949441+CDS,intron-Distal3.763523.65594HepG2EIF3H
chrX5495503454955100+CDS,intron-Proximal4.814415.85497HepG2GRWD1
chrX5495503554955098+CDS,intron-Proximal3.160256.86395HepG2BCLAF1
chrX5495288854952923+CDS,intron-Proximal4.256607.16838HepG2BCLAF1
chrX5495346754953530+CDS,intron-Proximal3.520053.16095HepG2U2AF2
chrX5495510054955138+CDS3.835343.14999HepG2GRWD1
chrX5495509554955146+CDS,intron-Proximal4.9022210.78364HepG2PPIG
chrX5495206854952117+CDS,intron-Proximal3.559106.47196HepG2BCLAF1
chrX5495303454953122+CDS,intron-Proximal4.313738.68543HepG2PPIG
chrX5495503554955095+CDS,intron-Proximal3.9620311.41042HepG2PPIG
chrX5495317354953253+intron-Distal3.4063810.11361HepG2BCLAF1
chrX5495379254953851+intron-Distal3.53776400.00000HepG2DKC1
chrX5495377854953786+intron-Distal3.7679837.54442HepG2DKC1
chrX5495385854953868+intron-Distal3.8669744.02831HepG2DKC1
chrX5495375154953778+intron-Distal3.2003428.83839HepG2DKC1
chrX5495338654953460+intron-Proximal3.879513.25678HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRO is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRO is not available on ENCORE database.

  • 89 RBPs can affect the levels of TRO.  








The Knockdown/knockout RNA-Seq assay for TRO is not available on ENCORE database.





89 RBPs can affect the gene expression of TRO :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TROENSG00000067445.161062.54700794.685900.419002.353601.48300HepG2ABCF1
TROENSG00000067445.161110.86700838.848300.405102.405801.90640HepG2AKAP1
TROENSG00000067445.161505.626401023.384400.5569010.087108.91290HepG2AUH
TROENSG00000067445.16407.83640563.61750-0.466702.807601.90380HepG2BCLAF1
TROENSG00000067445.16325.21820659.06510-1.0190012.0747010.94340HepG2BOP1
TROENSG00000067445.16800.67510595.207400.427703.075501.77840HepG2BUD13
TROENSG00000067445.162406.851301037.645601.2137017.4782015.23190HepG2CCAR1
TROENSG00000067445.16485.88980659.42670-0.440602.676401.91570HepG2CIRBP
TROENSG00000067445.16491.33360684.65500-0.478705.510804.63200HepG2CKAP4
TROENSG00000067445.16492.00860684.05550-0.475403.302302.18930HepG2YBX3
TROENSG00000067445.16609.927301002.13960-0.7164011.3299010.20300HepG2CELF1
TROENSG00000067445.16533.07500684.96370-0.361702.711701.56310HepG2DDX1
TROENSG00000067445.161202.01960803.574400.580905.139304.31090HepG2DDX3X
TROENSG00000067445.16775.961601016.10110-0.389003.005501.65600HepG2DDX47
TROENSG00000067445.16779.88470588.820900.405303.108201.67450HepG2DDX52
TROENSG00000067445.16475.92320687.09650-0.529802.172801.31050HepG2DDX59
TROENSG00000067445.16799.64320655.170000.287402.281701.65650HepG2DKC1
TROENSG00000067445.16852.49010671.625800.343903.048602.31500HepG2DNAJC21
TROENSG00000067445.16901.32000663.591300.441603.049702.42820HepG2EIF2S1
TROENSG00000067445.16725.533201063.04750-0.551107.598206.33770HepG2EIF4G1
TROENSG00000067445.16955.77500688.246500.473603.456902.24250HepG2ESF1
TROENSG00000067445.161491.081201175.032300.343603.929103.23380HepG2ETF1
TROENSG00000067445.161109.96120802.392400.468002.700001.94020HepG2FIP1L1
TROENSG00000067445.161222.82500755.046700.695505.216303.71440HepG2FUS
TROENSG00000067445.161099.67550739.867400.571605.031504.11970HepG2FXR1
TROENSG00000067445.16883.31440686.373600.363802.114601.53010HepG2G3BP1
TROENSG00000067445.16680.52240507.708400.422502.463001.62280HepG2GEMIN5
TROENSG00000067445.161134.50840685.923500.725807.117206.12200HepG2GPKOW
TROENSG00000067445.16522.44680805.61400-0.624803.820002.51010HepG2GRSF1
TROENSG00000067445.161141.20580678.061200.751009.822208.71490HepG2HNRNPA1
TROENSG00000067445.16921.90350694.926400.407702.887602.17390HepG2HNRNPK
TROENSG00000067445.161451.50000981.387700.5645012.9710011.61090HepG2HNRNPL
TROENSG00000067445.16190.76770654.58660-1.7788027.0600025.43000HepG2HNRNPLL
TROENSG00000067445.161066.09140749.260300.508707.496706.53690HepG2HNRNPU
TROENSG00000067445.161252.75390896.832000.482102.937601.65150HepG2KRR1
TROENSG00000067445.16473.30920740.12530-0.645005.089704.20890HepG2MAGOH
TROENSG00000067445.16882.19760596.777400.563802.829001.76390HepG2METAP2
TROENSG00000067445.161113.59560761.821100.547604.371503.58310HepG2NCBP2
TROENSG00000067445.16586.56140850.54140-0.536103.149701.62390HepG2NKRF
TROENSG00000067445.16814.631201068.35790-0.391203.664202.78610HepG2NOL12
TROENSG00000067445.16518.99440795.45670-0.616103.084302.14460HepG2PABPC1
TROENSG00000067445.16429.67640678.49540-0.659105.146504.17350HepG2PABPC4
TROENSG00000067445.16410.23630780.44690-0.927806.598004.32880HepG2PNPT1
TROENSG00000067445.16476.65840668.27480-0.487504.606803.67880HepG2PPIL4
TROENSG00000067445.16930.53810722.530400.364903.739403.12460HepG2PTBP1
TROENSG00000067445.16806.114401082.69510-0.425605.834505.03800HepG2PUM1
TROENSG00000067445.161353.590601081.875300.323203.194902.47410HepG2PUM2
TROENSG00000067445.16552.87200697.51500-0.335302.952502.32150HepG2PUS1
TROENSG00000067445.161000.69410782.528600.354703.055302.40450HepG2QKI
TROENSG00000067445.16274.80420689.63380-1.3274010.176808.88800HepG2RAVER1
TROENSG00000067445.161182.68130982.099100.268002.268401.78630HepG2RBM22
TROENSG00000067445.16516.88160840.56270-0.701504.889702.87280HepG2RBM47
TROENSG00000067445.161397.39770804.111000.7972017.0409015.91980HepG2NELFE
TROENSG00000067445.161031.55670748.912800.461905.715804.86990HepG2RECQL
TROENSG00000067445.16656.96220889.18530-0.436703.598702.83740HepG2RPLP0
TROENSG00000067445.16460.87210677.60750-0.556102.892401.92860HepG2RPS10
TROENSG00000067445.16810.27150554.891100.546105.041604.23930HepG2RPS19
TROENSG00000067445.161087.67050862.650900.334302.453101.69580HepG2RPS2
TROENSG00000067445.16280.45970486.59390-0.794905.742704.65050HepG2RRP9
TROENSG00000067445.16476.04400823.08370-0.789906.668004.66080HepG2SART3
TROENSG00000067445.16882.09970417.805901.078003.409701.86530HepG2SF1
TROENSG00000067445.16557.98840926.48270-0.731505.794004.79600HepG2SF3A3
TROENSG00000067445.16197.44980647.92920-1.7143027.0204025.08870HepG2SF3B1
TROENSG00000067445.16769.65230978.00230-0.345602.957402.23410HepG2SLBP
TROENSG00000067445.16948.61140778.072500.285803.039702.36980HepG2SMN1
TROENSG00000067445.161333.954701109.226400.266102.860102.35280HepG2SRFBP1
TROENSG00000067445.16495.52050697.12360-0.492502.626701.65450HepG2SRSF3
TROENSG00000067445.16822.206401007.03960-0.292502.518201.91680HepG2SRSF5
TROENSG00000067445.16673.89330810.90960-0.267002.337201.69350HepG2SRSF7
TROENSG00000067445.16522.69590638.79000-0.289402.173901.67260HepG2SRSF9
TROENSG00000067445.161149.17970963.038900.254802.409901.92430HepG2SSB
TROENSG00000067445.16561.96990760.42900-0.436302.391201.37900HepG2STIP1
TROENSG00000067445.16409.39160541.62650-0.403803.065202.08040HepG2SUPT6H
TROENSG00000067445.161290.82920705.748600.8710018.1922016.93680HepG2TAF15
TROENSG00000067445.16581.27550734.56230-0.337702.651002.09570HepG2TRIM56
TROENSG00000067445.16511.34540686.27020-0.424502.811402.17820HepG2U2AF1
TROENSG00000067445.16780.085201054.78350-0.435202.502901.70910HepG2UBE2L3
TROENSG00000067445.16559.93750821.65020-0.553306.793005.77760HepG2UPF1
TROENSG00000067445.161139.37860581.293200.970808.432806.63400HepG2UPF2
TROENSG00000067445.161116.25300844.529100.402304.707903.37830HepG2UTP18
TROENSG00000067445.16997.46680624.990600.674305.766104.73110HepG2XRN2
TROENSG00000067445.16856.07290640.054000.419404.986304.12920HepG2ZC3H8
TROENSG00000067445.16168.73570903.65560-2.4210096.5402094.56100HepG2ZNF622
TROENSG00000067445.1668.2301019.753201.788204.494603.09760K562CNOT7
TROENSG00000067445.1654.9463026.304801.062602.323501.71760K562DDX47
TROENSG00000067445.1669.6747028.374801.295902.954202.17420K562GRSF1
TROENSG00000067445.1661.6574017.601201.808505.431403.94680K562HNRNPA1
TROENSG00000067445.1641.5889010.720301.955703.584602.91700K562HNRNPC
TROENSG00000067445.1667.7349019.487701.797205.741904.44330K562HNRNPU
TROENSG00000067445.1665.8843021.003101.649204.798303.75620K562MTPAP
TROENSG00000067445.16113.0521039.694101.509905.833504.62070K562PCBP3
TROENSG00000067445.1688.8258030.442501.544805.682704.53700K562POLR2G
TROENSG00000067445.1641.2981013.423801.621202.516901.73960K562RPS19
TROENSG00000067445.1635.771109.245401.951903.277802.25390K562TIAL1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRO is not available on ENCORE database.





5 RBPs can affect the splicing of TRO :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETROENSG00000067445.16chrX+549571735495746454955035549551435495763654957864-0.529000.000000.00000excludedHepG2SRSF1
A5SSTROENSG00000067445.16chrX+549550355495746454955035549551435495763654957864-0.429000.000000.00003shorterHepG2SRSF1
RITROENSG00000067445.16chrX+549550355495746454955035549551435495717354957464-0.266000.000740.05857excludedHepG2HNRNPL
RITROENSG00000067445.16chrX+549550355495746454955035549551435495717354957464-0.290000.003680.09067excludedHepG2TIA1
RITROENSG00000067445.16chrX+549550355495746454955035549551435495717354957464-0.241000.007780.07075excludedHepG2QKI
RITROENSG00000067445.16chrX+5495503554957464549550355495514354957173549574640.204000.008580.06771includedHepG2RBM22

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TRO is not avaliable on ENCORE database.