CPB2

General Information

Gene Name       : CPB2
Gene ID             : ENSG00000080618.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CPB2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CPB2ENSG00000080618.140.000.050.03ENCSR000AEF
HepG2CPB2ENSG00000080618.14106.22180.36143.29ENCSR985KAT
K562CPB2ENSG00000080618.140.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CPB2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CPB2 RNA is bound by 8 proteins.  







eCLIP assay for CPB2 is not avaliable on ENCORE database.





8 proteins are bound to CPB2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr134662758346627649-3'-UTR,intron-Distal4.9873713.00938HepG2TIAL1
chr134662764946627663-3'-UTR,intron-Distal3.332803.82357HepG2TIAL1
chr134667907046679147-5'-UTR,CDS,intron-Distal4.022186.67587HepG2DDX3X
chr134665844046658471-CDS,intron-Distal4.109933.48040HepG2SND1
chr134663250146632516-CDS,intron-Distal3.507143.41356HepG2SND1
chr134665660146656634-CDS,intron-Distal3.946153.57831HepG2SND1
chr134665286446652967-CDS,intron-Distal,intron-Proximal5.1229315.84669HepG2PRPF8
chr134663878246638829-CDS,intron-Distal,intron-Proximal4.724345.79199HepG2SND1
chr134662781046627842-CDS,intron-Distal,intron-Proximal4.653663.48040HepG2SND1
chr134664800646648039-CDS,intron-Distal,intron-Proximal3.5206910.08874HepG2BCLAF1
chr134667900946679059-intron-Distal3.540656.04280HepG2PRPF8
chr134664553546645636-intron-Distal4.3724112.62606HepG2QKI
chr134667479446674870-intron-Distal3.510296.52138HepG2QKI
chr134665286346652909-intron-Distal,intron-Proximal4.708174.75882HepG2RBM22
chr134665202446652110-intron-Distal3.128813.06005HepG2QKI
chr134665181546651895-intron-Distal3.707136.64740HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CPB2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CPB2 is not available on ENCORE database.

  • 102 RBPs can affect the levels of CPB2.  








The Knockdown/knockout RNA-Seq assay for CPB2 is not available on ENCORE database.





102 RBPs can affect the gene expression of CPB2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CPB2ENSG00000080618.9802.778301593.84480-0.9894032.7200031.18290HepG2ACO1
CPB2ENSG00000080618.91378.664403862.28390-1.4862030.8118029.27710HepG2AKAP1
CPB2ENSG00000080618.91239.397801601.36890-0.369705.200204.17760HepG2AKAP8L
CPB2ENSG00000080618.94306.641303195.768400.430304.096103.14890HepG2ASCC1
CPB2ENSG00000080618.92885.557002559.739300.172801.991801.39210HepG2AUH
CPB2ENSG00000080618.91276.283901887.17700-0.564304.321903.14810HepG2BCCIP
CPB2ENSG00000080618.92271.680301639.929200.470004.426803.31340HepG2BCLAF1
CPB2ENSG00000080618.94335.054703036.183000.513705.891704.79210HepG2CIRBP
CPB2ENSG00000080618.93195.936901593.541401.0039053.1337051.09360HepG2CKAP4
CPB2ENSG00000080618.9970.957201700.99740-0.808906.192105.04850HepG2CNOT7
CPB2ENSG00000080618.91315.092501775.40440-0.433003.825403.02980HepG2CPSF6
CPB2ENSG00000080618.91518.971501165.867700.381603.434202.24740HepG2CSTF2
CPB2ENSG00000080618.91780.716703022.50950-0.7633022.6024021.12770HepG2CELF1
CPB2ENSG00000080618.92438.098003250.04360-0.4147011.069909.74320HepG2DAZAP1
CPB2ENSG00000080618.9830.600302239.08390-1.4307019.2891017.69700HepG2DDX21
CPB2ENSG00000080618.91716.192803699.88910-1.1083021.0590019.49990HepG2DDX3X
CPB2ENSG00000080618.94697.683902016.096701.220303.250502.19340HepG2DDX59
CPB2ENSG00000080618.91600.691502255.15490-0.494508.811407.61020HepG2DNAJC21
CPB2ENSG00000080618.93086.489602271.893100.442004.355103.22360HepG2EEF2
CPB2ENSG00000080618.92053.265103055.36720-0.573406.273405.39930HepG2EIF2S1
CPB2ENSG00000080618.91062.804201789.91970-0.7520012.9518010.67420HepG2EIF2S2
CPB2ENSG00000080618.92729.730701844.200100.565706.356905.02670HepG2EIF3D
CPB2ENSG00000080618.92486.726003376.66790-0.441403.455902.74260HepG2EIF4A3
CPB2ENSG00000080618.94073.940903206.278000.345402.187301.42790HepG2EIF4G1
CPB2ENSG00000080618.92496.044303071.42520-0.299302.139701.41780HepG2EIF4G2
CPB2ENSG00000080618.92784.786502043.915500.446104.880203.47170HepG2ESF1
CPB2ENSG00000080618.92489.096702938.82860-0.239603.172402.53600HepG2ETF1
CPB2ENSG00000080618.91311.377602382.38830-0.8613011.142209.74560HepG2FIP1L1
CPB2ENSG00000080618.92606.162502052.339100.344603.407102.53930HepG2FUBP3
CPB2ENSG00000080618.92146.632302943.12120-0.455302.879501.74150HepG2FUS
CPB2ENSG00000080618.92239.809603406.52900-0.604907.171406.09290HepG2FXR1
CPB2ENSG00000080618.92154.891503160.25900-0.552405.462604.54160HepG2G3BP1
CPB2ENSG00000080618.91198.732102078.16370-0.7938010.517208.49980HepG2GNB2L1
CPB2ENSG00000080618.94146.289602986.833000.4731011.151909.50910HepG2HNRNPA2B1
CPB2ENSG00000080618.92037.805801573.053900.373302.427301.75260HepG2HNRNPF
CPB2ENSG00000080618.94980.683803199.572800.638409.838708.58930HepG2HNRNPK
CPB2ENSG00000080618.93245.340001920.660900.7567011.5356010.36000HepG2HNRNPLL
CPB2ENSG00000080618.91332.690901643.88180-0.302802.474101.57140HepG2HNRNPM
CPB2ENSG00000080618.92165.295201548.993900.483105.988304.96410HepG2IGF2BP1
CPB2ENSG00000080618.92534.815303212.40670-0.341802.586701.93210HepG2IGF2BP2
CPB2ENSG00000080618.91702.132203014.41310-0.824503.943902.77080HepG2IGF2BP3
CPB2ENSG00000080618.93472.977302569.749900.4344013.5505012.06010HepG2ILF2
CPB2ENSG00000080618.91087.110703426.85220-1.6564038.3470036.20510HepG2MATR3
CPB2ENSG00000080618.9857.953401928.36550-1.1684027.9782025.84930HepG2MSI2
CPB2ENSG00000080618.92223.193801619.204000.457205.493903.79280HepG2NAA15
CPB2ENSG00000080618.92587.469203507.62500-0.439003.714002.98440HepG2NCBP2
CPB2ENSG00000080618.91037.190801638.39050-0.659605.086903.14960HepG2NKRF
CPB2ENSG00000080618.92180.926203222.73090-0.5633011.154409.66150HepG2NOL12
CPB2ENSG00000080618.93789.002901703.000801.1536021.8373020.01630HepG2NSUN2
CPB2ENSG00000080618.9929.875701554.53500-0.741404.721403.53900HepG2PABPC1
CPB2ENSG00000080618.91529.441403124.00410-1.0304017.5965015.82320HepG2PABPC4
CPB2ENSG00000080618.92087.328302490.13800-0.254603.245202.33490HepG2PARN
CPB2ENSG00000080618.91360.461002786.15070-1.0342011.254009.37350HepG2PCBP2
CPB2ENSG00000080618.9738.997601525.29440-1.045409.425206.79040HepG2PNPT1
CPB2ENSG00000080618.94146.926501755.529601.2400065.3610062.66570HepG2PRPF4
CPB2ENSG00000080618.92290.857703398.01200-0.5688015.2674014.18200HepG2PTBP1
CPB2ENSG00000080618.92144.055203076.34980-0.520907.452406.53570HepG2PUF60
CPB2ENSG00000080618.92704.026103263.28300-0.271202.470101.83680HepG2PUM2
CPB2ENSG00000080618.92968.199801623.440600.8704022.2673020.82720HepG2PUS1
CPB2ENSG00000080618.91572.819902688.86470-0.773605.303504.34470HepG2RAVER1
CPB2ENSG00000080618.91654.818402456.33670-0.569805.877105.19160HepG2RBM22
CPB2ENSG00000080618.94046.151003339.977100.276602.704002.03640HepG2RBM25
CPB2ENSG00000080618.91721.691102454.74700-0.511705.019503.66510HepG2RBM27
CPB2ENSG00000080618.92194.156603781.67710-0.7854028.3577026.99970HepG2NELFE
CPB2ENSG00000080618.9679.097401794.56420-1.4019038.8879037.05540HepG2RPS19
CPB2ENSG00000080618.91307.979302263.99910-0.7915011.5592010.01840HepG2RPS2
CPB2ENSG00000080618.91675.645402310.97430-0.463804.260402.91330HepG2RPS5
CPB2ENSG00000080618.91901.887601416.231900.425303.471202.60450HepG2RRP9
CPB2ENSG00000080618.91270.366402240.37440-0.8185028.7491026.98510HepG2SAFB2
CPB2ENSG00000080618.91379.315601801.00400-0.384803.133802.12970HepG2SERBP1
CPB2ENSG00000080618.93504.024502739.593100.355002.212101.60810HepG2SF3A3
CPB2ENSG00000080618.93938.251301901.100701.0506020.6407018.91090HepG2SF3B1
CPB2ENSG00000080618.91835.321103537.80360-0.9468039.9513038.20610HepG2SF3B4
CPB2ENSG00000080618.91379.620802612.63810-0.9212043.9662041.96750HepG2SMN1
CPB2ENSG00000080618.91488.374602774.37670-0.8984035.5680034.30330HepG2SRFBP1
CPB2ENSG00000080618.92342.055001767.311900.406103.333301.54740HepG2SRP68
CPB2ENSG00000080618.93034.948503692.68690-0.283005.166304.57140HepG2SRSF1
CPB2ENSG00000080618.92609.862402045.517500.351402.242001.35300HepG2SRSF3
CPB2ENSG00000080618.92143.661103037.40670-0.5028011.8965010.72530HepG2SRSF5
CPB2ENSG00000080618.92004.570501545.525800.375103.716502.92700HepG2SRSF7
CPB2ENSG00000080618.92203.096603004.18540-0.4474010.608309.65170HepG2SRSF9
CPB2ENSG00000080618.92816.350402408.876800.225403.119602.58220HepG2SSB
CPB2ENSG00000080618.91062.326901591.47510-0.583104.068202.59320HepG2STAU1
CPB2ENSG00000080618.92464.391703454.40300-0.4872014.2043012.97520HepG2SUCLG1
CPB2ENSG00000080618.91012.185101847.14510-0.867809.816408.67160HepG2SUPV3L1
CPB2ENSG00000080618.92936.370503319.09200-0.176801.774801.30640HepG2TAF15
CPB2ENSG00000080618.93414.897601871.931100.8672016.5497015.03370HepG2TARDBP
CPB2ENSG00000080618.91909.926003049.83480-0.6752013.0968011.30500HepG2TIA1
CPB2ENSG00000080618.91358.491902444.45470-0.8475020.0350018.91630HepG2TIAL1
CPB2ENSG00000080618.91680.268902466.37520-0.5537013.3026012.19820HepG2TRIM56
CPB2ENSG00000080618.92319.394003005.40810-0.373803.600302.59110HepG2TUFM
CPB2ENSG00000080618.91633.870902038.10150-0.318902.388701.80100HepG2U2AF1
CPB2ENSG00000080618.92206.851603181.14080-0.527605.222004.05110HepG2UBE2L3
CPB2ENSG00000080618.9607.204001091.23290-0.845709.780408.35450HepG2UCHL5
CPB2ENSG00000080618.93193.149002429.594000.394208.517507.40330HepG2UPF1
CPB2ENSG00000080618.91144.355401691.67940-0.563903.417402.29520HepG2UPF2
CPB2ENSG00000080618.93205.263802497.329400.360006.013604.52480HepG2UTP18
CPB2ENSG00000080618.93496.557302345.687000.5758016.9658015.66940HepG2UTP3
CPB2ENSG00000080618.9988.754801529.39680-0.629304.809603.34910HepG2XPO5
CPB2ENSG00000080618.91689.578102956.88020-0.807407.760606.06560HepG2XRCC6
CPB2ENSG00000080618.92364.533501818.308800.378903.460002.65440HepG2XRN2
CPB2ENSG00000080618.92125.810102672.09710-0.330007.044606.27700HepG2ZNF622
CPB2ENSG00000080618.90.0000011.87050-99999.999992.146301.50750K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CPB2 is not available on ENCORE database.





13 RBPs can affect the splicing of CPB2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECPB2ENSG00000080618.9chr13-466529344665303646648007466481124665657546656732-0.103000.000000.00000excludedHepG2U2AF1
SECPB2ENSG00000080618.9chr13-466414414664155246638782466388764664800746648112-0.105000.000020.00084excludedHepG2HNRNPK
SECPB2ENSG00000080618.9chr13-466414414664155246638782466388764664800746648112-0.189000.000000.00000excludedHepG2AKAP1
SECPB2ENSG00000080618.9chr13-466565754665673246652934466530364665835346658478-0.063000.001070.08501excludedHepG2SRSF7
SECPB2ENSG00000080618.9chr13-466387824663887646632313466325164664800746648112-0.054000.000400.03808excludedHepG2DDX6
SECPB2ENSG00000080618.9chr13-466414414664155246638782466388764664800746648112-0.081000.005090.08936excludedHepG2SRSF1
SECPB2ENSG00000080618.9chr13-466387824663887646632313466325164664800746648112-0.101000.000020.00141excludedHepG2SF3A3
SECPB2ENSG00000080618.9chr13-466565754665668446652934466530364665835346658478-0.091000.000000.00000excludedHepG2SF3A3
SECPB2ENSG00000080618.9chr13-466565754665673246652934466530364665835346658478-0.054000.002880.08663excludedHepG2HNRNPC
SECPB2ENSG00000080618.9chr13-466565754665668446652934466530364665835346658478-0.055000.000150.05785excludedHepG2DROSHA
SECPB2ENSG00000080618.9chr13-466414414664155246638782466388764664800746648112-0.084000.000840.08796excludedHepG2KHSRP
A3SSCPB2ENSG00000080618.9chr13-4665657546656732466565754665668446658353466584780.122000.000000.00000longerHepG2U2AF2
A3SSCPB2ENSG00000080618.9chr13-4665657546656732466565754665668446658353466584780.185000.000000.00000longerHepG2U2AF1
MXECPB2ENSG00000080618.9chr13-46652934466530364665657546656786466480074664811246658353466584780.125000.000000.000001includedHepG2U2AF1
MXECPB2ENSG00000080618.9chr13-46652934466530364665657546656732466480074664811246658353466584780.221000.000000.000001includedHepG2U2AF1
MXECPB2ENSG00000080618.9chr13-46652934466530364665657546656708466480074664811246658353466584780.146000.000000.000001includedHepG2U2AF1
MXECPB2ENSG00000080618.9chr13-4664800746648112466529344665303646638782466388764665657546656684-0.073000.003660.057622includedHepG2U2AF1
MXECPB2ENSG00000080618.9chr13-46652934466530364665657546656684466480074664811246658353466584780.260000.000000.000001includedHepG2U2AF2
MXECPB2ENSG00000080618.9chr13-46652934466530364665657546656732466480074664811246658353466584780.181000.000000.000001includedHepG2U2AF2
MXECPB2ENSG00000080618.9chr13-46652934466530364665657546656708466480074664811246658353466584780.066000.000000.000071includedHepG2U2AF2
MXECPB2ENSG00000080618.9chr13-46652934466530364665657546656684466480074664811246658353466584780.131000.001370.044331includedHepG2RBFOX2
MXECPB2ENSG00000080618.9chr13-46652934466530364665657546656684466480074664811246658353466584780.165000.000620.013461includedHepG2HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CPB2 is not avaliable on ENCORE database.