HOXA3

General Information

Gene Name       : HOXA3
Gene ID             : ENSG00000105997.22
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HOXA3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HOXA3ENSG00000105997.220.000.000.00ENCSR000AEF
HepG2HOXA3ENSG00000105997.227.122.895.00ENCSR985KAT
K562HOXA3ENSG00000105997.220.020.010.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HOXA3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HOXA3 RNA is bound by 12 proteins.  







eCLIP assay for HOXA3 is not avaliable on ENCORE database.





12 proteins are bound to HOXA3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr72714653027146621-3'-UTR,intron-Distal,intron-Proximal3.023713.07069HepG2CSTF2
chr72715334827153419-5'-UTR,intron-Distal3.655045.75313HepG2NKRF
chr72715341727153464-5'-UTR,intron-Distal4.2214023.71381HepG2FAM120A
chr72715343127153481-5'-UTR,intron-Distal,intron-Proximal3.653638.32031HepG2GTF2F1
chr72715327827153365-5'-UTR,intron-Distal3.268156.68106HepG2CSTF2T
chr72715343127153480-5'-UTR,intron-Distal,intron-Proximal3.254993.81185HepG2FASTKD2
chr72715341927153486-5'-UTR,intron-Distal,intron-Proximal4.7748021.26138HepG2PRPF4
chr72715337827153417-5'-UTR,intron-Distal4.651446.33281HepG2FAM120A
chr72715342827153483-5'-UTR,intron-Distal,intron-Proximal4.8586717.87148HepG2CSTF2T
chr72715337027153397-5'-UTR,intron-Distal3.378994.21158HepG2CSTF2T
chr72715340427153428-5'-UTR,intron-Distal4.516304.92128HepG2CSTF2T
chr72715341927153484-5'-UTR,intron-Distal,intron-Proximal3.1681117.43453HepG2NKRF
chr72714965927149738-CDS,intron-Distal,intron-Proximal3.355585.62208HepG2PRPF8
chr72714982127149949-CDS,intron-Distal,intron-Proximal3.469636.22789HepG2PCBP2
chr72715346427153491-intron-Distal,intron-Proximal3.8006219.28591HepG2FAM120A
chr72716873227168824-3'-UTR,intron-Distal5.125105.77028HepG2PCBP2
chr72715726927157383-intron-Distal3.161065.64015HepG2RBFOX2
chr72716097727161021-intron-Distal5.366939.71039HepG2HNRNPL
chr72715727627157371-intron-Distal4.771376.78736HepG2PRPF4
chr72716081727160956-intron-Distal4.7233364.23653HepG2HNRNPL
chr72715766227157750-intron-Distal4.020135.51953HepG2SFPQ
chr72715289327152955-intron-Distal3.100104.07062HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HOXA3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HOXA3 is not available on ENCORE database.

  • 46 RBPs can affect the levels of HOXA3.  








The Knockdown/knockout RNA-Seq assay for HOXA3 is not available on ENCORE database.





46 RBPs can affect the gene expression of HOXA3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HOXA3ENSG00000105997.18206.47420273.21780-0.404102.084901.54270HepG2ACO1
HOXA3ENSG00000105997.18271.22860185.307300.549502.626401.65290HepG2ADAR
HOXA3ENSG00000105997.18115.85020268.74880-1.214007.337606.51630HepG2AKAP1
HOXA3ENSG00000105997.18263.73300372.94620-0.499903.346902.60410HepG2AUH
HOXA3ENSG00000105997.18333.79990209.097600.674702.851701.89870HepG2BCCIP
HOXA3ENSG00000105997.18203.69840367.03700-0.849505.797204.96930HepG2BOP1
HOXA3ENSG00000105997.18151.36300344.95120-1.1884010.954609.57990HepG2CALR
HOXA3ENSG00000105997.18752.78500539.074100.481702.659701.70750HepG2CCAR1
HOXA3ENSG00000105997.18497.52440356.774700.479703.135601.95860HepG2CPSF7
HOXA3ENSG00000105997.18229.75490343.89070-0.581903.927803.18600HepG2CELF1
HOXA3ENSG00000105997.18398.27990212.088700.909007.634506.56410HepG2DDX21
HOXA3ENSG00000105997.18321.18860183.421400.808205.624603.77300HepG2DDX52
HOXA3ENSG00000105997.18274.52830409.18220-0.575803.575002.43140HepG2DDX5
HOXA3ENSG00000105997.18530.77250261.410101.021706.012805.08760HepG2DKC1
HOXA3ENSG00000105997.18432.68220218.801900.983604.057802.96410HepG2EEF2
HOXA3ENSG00000105997.18467.32580228.752401.030506.996705.93140HepG2EIF4B
HOXA3ENSG00000105997.18372.17400237.100900.650402.819002.11990HepG2FXR1
HOXA3ENSG00000105997.18353.39640219.868700.684503.671402.90900HepG2G3BP1
HOXA3ENSG00000105997.18280.44320158.117300.826604.877303.68550HepG2GEMIN5
HOXA3ENSG00000105997.18695.64360381.910000.865003.680102.95060HepG2GPKOW
HOXA3ENSG00000105997.18554.35150188.394301.5569022.0111020.48800HepG2HNRNPA1
HOXA3ENSG00000105997.18379.72880238.488000.671003.560302.85250HepG2MATR3
HOXA3ENSG00000105997.18222.29330113.273400.972603.958702.24870HepG2NOLC1
HOXA3ENSG00000105997.18491.04980323.201200.603303.876102.99430HepG2NSUN2
HOXA3ENSG00000105997.18267.78560203.105100.398802.024501.49200HepG2PCBP1
HOXA3ENSG00000105997.1890.17680165.82200-0.878803.317701.65580HepG2PNPT1
HOXA3ENSG00000105997.18300.37010223.804700.424402.094301.53920HepG2QKI
HOXA3ENSG00000105997.18335.43280522.40560-0.639102.683501.83750HepG2RBM15
HOXA3ENSG00000105997.18223.26330357.90770-0.680805.251104.59420HepG2RBM22
HOXA3ENSG00000105997.18626.96650230.006201.4466012.4463011.45300HepG2NELFE
HOXA3ENSG00000105997.18365.65880214.249400.771106.597305.70340HepG2RECQL
HOXA3ENSG00000105997.18186.40030252.35670-0.437101.959401.37250HepG2RPLP0
HOXA3ENSG00000105997.18126.97570222.99640-0.812503.487302.42670HepG2RPS10
HOXA3ENSG00000105997.18108.86820173.42440-0.671702.618701.70520HepG2SERBP1
HOXA3ENSG00000105997.18273.04110136.740000.997602.648401.37650HepG2SNRNP200
HOXA3ENSG00000105997.18568.86520401.380100.503002.138901.45480HepG2SNRNP70
HOXA3ENSG00000105997.18265.32910404.23280-0.607405.202204.57500HepG2SRFBP1
HOXA3ENSG00000105997.18595.02410350.951000.761609.905809.05060HepG2SSB
HOXA3ENSG00000105997.18340.91180202.299300.752805.693805.02670HepG2TIAL1
HOXA3ENSG00000105997.18237.45300374.20540-0.656203.572802.86310HepG2U2AF1
HOXA3ENSG00000105997.18420.62950159.145601.402103.696702.54870HepG2U2AF2
HOXA3ENSG00000105997.18649.70460398.205100.706207.382406.33350HepG2UPF1
HOXA3ENSG00000105997.18299.94560187.352000.678802.448901.50790HepG2UPF2
HOXA3ENSG00000105997.18115.74780223.23350-0.947603.960702.44160HepG2XRCC5
HOXA3ENSG00000105997.18447.76230201.457701.152209.103107.80740HepG2XRN2
HOXA3ENSG00000105997.18287.54100437.95070-0.607005.972705.24900HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HOXA3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of HOXA3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for HOXA3 is not avaliable on ENCORE database.