FAM65C

General Information

Gene Name       : FAM65C
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM65C)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM65C is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM65C RNA is bound by 29 proteins.  







eCLIP assay for FAM65C is not avaliable on ENCORE database.





29 proteins are bound to FAM65C RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr204920267449202717-3'-UTR,intron-Distal3.938724.30850K562ZC3H11A
chr204920269849202826-3'-UTR,intron-Distal4.156576.74636K562UPF1
chr204920291449203045-3'-UTR,intron-Distal4.391176.14808K562UPF1
chr204930775249307793-5'-UTR,intron-Distal3.881683.15006K562RBM15
chr204930776649307812-5'-UTR,intron-Distal5.318788.43384K562UCHL5
chr204930766349307764-5'-UTR,CDS,intron-Distal3.868745.01310K562NCBP2
chr204921881949218876-CDS,intron-Distal3.280864.08412K562RBM15
chr204921119649211296-CDS,intron-Distal,intron-Proximal3.253186.72159K562SF3B4
chr204922497449225036-CDS,intron-Distal4.562844.36390K562PUM1
chr204921859349218610-CDS,intron-Distal,intron-Proximal3.3159611.83363K562AQR
chr204921887649218952-CDS,intron-Distal3.226405.13929K562RBM15
chr204922123449221310-CDS,intron-Distal3.598513.04123K562LIN28B
chr204922492549224951-CDS,intron-Distal,intron-Proximal3.205796.21602K562ZNF622
chr204920902949209064-CDS,intron-Distal,intron-Proximal3.415615.62662K562BUD13
chr204921420749214304-CDS,intron-Distal,intron-Proximal3.058434.66520K562SF3B4
chr204923652449236580-CDS,intron-Distal3.325157.85158K562UCHL5
chr204923652249236531-CDS,intron-Distal,intron-Proximal4.094796.22817K562DDX24
chr204923253649232613-CDS,intron-Distal,intron-Proximal3.357244.13112K562SRSF1
chr204923658049236645-CDS,intron-Distal3.535949.75908K562ZNF622
chr204922514949225214-CDS,intron-Distal,intron-Proximal4.4778315.93877K562DDX24
chr204922583249225886-CDS,intron-Distal3.181477.34413K562BUD13
chr204922492749224971-CDS,intron-Distal3.5922413.76904K562DDX24
chr204922119049221225-CDS,intron-Distal4.739258.08515K562DDX24
chr204922771249227740-CDS,intron-Distal,intron-Proximal4.0430913.78659K562DDX24
chr204921863649218704-CDS,intron-Distal4.7649410.96138K562ZNF622
chr204921888949218981-CDS,intron-Distal3.498169.05903K562UCHL5
chr204924729549247329-CDS,intron-Distal3.240685.37652K562BUD13
chr204920969749209757-CDS,intron-Distal,intron-Proximal3.442347.70675K562AQR
chr204922741849227424-CDS,intron-Distal3.212024.37507K562DDX24
chr204921420949214332-CDS,intron-Distal,intron-Proximal3.172417.61935K562AQR
chr204924729349247347-CDS,intron-Distal4.9145011.21421K562DDX24
chr204922613549226185-CDS,intron-Distal3.181236.73886K562ZNF622
chr204921116449211243-CDS,intron-Distal4.246044.07830K562SRSF1
chr204922741449227475-CDS,intron-Distal,intron-Proximal3.032207.12014K562AQR
chr204922580949225831-CDS,intron-Distal,intron-Proximal3.385416.16312K562AQR
chr204920628649206350-CDS,intron-Distal,intron-Proximal4.861689.13098K562SF3B4
chr204922545649225512-CDS,intron-Distal,intron-Proximal3.7886412.03506K562BUD13
chr204921907049219103-CDS,intron-Distal3.543904.17944K562BUD13
chr204922502349225072-CDS,intron-Distal,intron-Proximal4.0865811.16978K562DDX24
chr204923254049232610-CDS,intron-Distal3.5502710.24116K562BUD13
chr204922612449226167-CDS,intron-Distal4.515529.20049K562DDX24
chr204922742449227443-CDS,intron-Distal3.673567.29897K562DDX24
chr204921185549211910-CDS,intron-Distal,intron-Proximal3.585047.22920K562AQR
chr204921900949219055-CDS,intron-Distal3.193853.04831K562RBM15
chr204921888249218949-CDS,intron-Distal4.3699615.93877K562DDX24
chr204922495149225004-CDS,intron-Distal3.142727.99242K562ZNF622
chr204923254049232615-CDS,intron-Distal5.3262119.28159K562DDX24
chr204923659849236653-CDS,intron-Distal4.1632514.57455K562DDX24
chr204922582549225869-CDS,intron-Distal,intron-Proximal4.7845512.25452K562DDX24
chr204922524649225267-CDS,intron-Distal3.548264.49347K562UCHL5
chr204921170649211755-intron-Distal,intron-Proximal4.777799.14224K562ZRANB2
chr204922744449227525-intron-Distal,intron-Proximal3.316876.34474K562EFTUD2
chr204928806349288096-intron-Distal3.337094.30181K562AGGF1
chr204923648049236501-intron-Distal,intron-Proximal5.247596.83960K562AQR
chr204928925549289322-intron-Distal3.877933.06347K562NONO
chr204921207749212197-intron-Distal,intron-Proximal3.176946.31676K562FUS
chr204928547349285529-intron-Distal5.095847.67146K562TARDBP
chr204922573449225797-intron-Distal,intron-Proximal3.808133.43867K562CSTF2T
chr204921143249211549-intron-Distal,intron-Proximal5.0990735.65801K562ZRANB2
chr204928552949285605-intron-Distal5.6089412.91978K562TARDBP
chr204921321549213269-intron-Distal3.556147.39702K562RBM15
chr204921856249218593-intron-Distal,intron-Proximal3.7188813.40055K562AQR
chr204922766249227702-intron-Distal,intron-Proximal3.253196.45164K562BUD13
chr204928835849288480-intron-Distal4.5676126.27729K562AGGF1
chr204922745249227510-intron-Distal,intron-Proximal3.837573.43867K562CSTF2T
chr204921281049212937-intron-Distal,intron-Proximal3.006383.35563K562FUS
chr204928499749285063-intron-Distal3.687255.73969K562EIF4G2
chr204930558449305644-intron-Distal4.093994.33299K562ILF3
chr204921853049218555-intron-Distal,intron-Proximal5.188277.28294K562AQR
chr204921252649212632-intron-Distal,intron-Proximal3.345974.87463K562FUS
chr204921393249214035-intron-Distal,intron-Proximal3.226265.05171K562HNRNPK
chr204921213349212160-intron-Distal,intron-Proximal4.913296.46975K562ZRANB2
chr204921144149211515-intron-Distal3.057596.88117K562BUD13
chr204928890149288965-intron-Distal4.8116216.75072K562AGGF1
chr204922628549226365-intron-Distal,intron-Proximal3.969068.36737K562EFTUD2
chr204928541349285471-intron-Distal4.531785.30489K562TARDBP
chr204928562149285706-intron-Distal3.390583.59765K562ILF3
chr204926608149266154-intron-Distal3.997083.31709K562ILF3
chr204921432149214382-intron-Distal,intron-Proximal4.428594.48994K562RBM15
chr204921305649213100-intron-Distal4.151973.73331K562RBM15
chr204929094149291039-intron-Distal4.928087.90406K562QKI
chr204921159649211649-intron-Distal5.5101817.89191K562ZRANB2
chr204927704249277130-intron-Distal3.317783.84725K562NONO
chr204922590349225941-intron-Distal,intron-Proximal4.022645.26108K562SF3B4
chr204923249649232529-intron-Distal,intron-Proximal3.681374.88100K562AQR
chr204922578549225809-intron-Distal,intron-Proximal5.501078.88118K562AQR
chr204922529049225374-intron-Distal,intron-Proximal4.536937.08280K562SF3B4
chr204928561649285698-intron-Distal5.8092111.47680K562EIF4G2
chr204930139749301464-intron-Distal4.821836.93487K562ILF3
chr204925215949252230-intron-Distal3.640083.62418K562PTBP1
chr204920975249209804-intron-Distal,intron-Proximal5.239726.47067K562SF3B4
chr204928820449288279-intron-Distal6.1522428.78753K562AGGF1
chr204922767249227711-intron-Distal,intron-Proximal5.1610519.65719K562AQR
chr204922606849226102-intron-Distal,intron-Proximal3.961414.00320K562AQR
chr204921310049213164-intron-Distal3.280145.58962K562RBM15
chr204928762449287728-intron-Distal5.666099.92723K562QKI
chr204928564649285703-intron-Distal4.271367.30349K562TARDBP
chr204921143849211506-intron-Distal5.0475811.37040K562DDX24
chr204921209349212133-intron-Distal,intron-Proximal3.916236.44536K562ZRANB2
chr204922597649226043-intron-Distal,intron-Proximal3.240687.53629K562BUD13
chr204928865149288750-intron-Distal4.9596618.09189K562AGGF1
chr204922761949227711-intron-Distal,intron-Proximal4.2805210.27121K562EFTUD2
chr204928995149290056-intron-Distal3.567423.30889K562GTF2F1
chr204922015449220213-intron-Distal3.997083.31709K562ILF3
chr204928890649288971-intron-Distal3.996874.27660K562HNRNPL
chr204921105449211083-intron-Distal,intron-Proximal4.967663.62536K562AQR
chr204923252949232538-intron-Distal,intron-Proximal3.507974.41130K562AQR
chr204922731249227386-intron-Distal,intron-Proximal3.658828.23725K562AQR
chr204930158249301675-intron-Distal3.725505.09850K562ILF3
chr204928791549287983-intron-Distal3.618568.41385K562TARDBP
chr204921256249212675-intron-Distal,intron-Proximal4.4544110.81562K562AQR
chr204920883449208881-intron-Distal,intron-Proximal4.424417.53589K562AQR
chr204928549349285548-intron-Distal4.318175.80675K562EIF4G2
chr204924308749243198-intron-Distal4.021325.05994K562XRN2
chr204922771149227718-intron-Distal,intron-Proximal3.8888914.67295K562AQR
chr204922595949226065-intron-Distal,intron-Proximal3.639588.82495K562EFTUD2
chr204928560549285646-intron-Distal4.815997.20766K562TARDBP
chr204922510049225149-intron-Distal,intron-Proximal4.083383.74409K562SSB
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM65C is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM65C is not available on ENCORE database.

  • 65 RBPs can affect the levels of FAM65C.  








The Knockdown/knockout RNA-Seq assay for FAM65C is not available on ENCORE database.





65 RBPs can affect the gene expression of FAM65C :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM65CENSG00000042062.727.563101.631704.078202.879802.26170HepG2ACO1
FAM65CENSG00000042062.751.172602.914004.134209.255307.88580HepG2CNOT7
FAM65CENSG00000042062.760.423406.302903.260909.328808.27960HepG2EIF2S1
FAM65CENSG00000042062.755.212906.969902.985707.999506.91530HepG2EIF4A3
FAM65CENSG00000042062.741.968307.021102.579405.158704.27040HepG2MAGOH
FAM65CENSG00000042062.716.201802.667602.602502.320201.52110HepG2PABPC1
FAM65CENSG00000042062.737.240006.447802.529904.924703.97070HepG2PABPC4
FAM65CENSG00000042062.719.150202.616102.871703.290001.63410HepG2PNPT1
FAM65CENSG00000042062.784.2731010.168003.050904.936804.32180HepG2SRFBP1
FAM65CENSG00000042062.715.099600.525404.844803.274102.11490HepG2TBRG4
FAM65CENSG00000042062.71835.552502237.32870-0.285603.657403.02140K562AGGF1
FAM65CENSG00000042062.73003.037202278.662500.398104.500002.85710K562APOBEC3C
FAM65CENSG00000042062.72076.047002442.71680-0.234602.244101.42970K562ATP5C1
FAM65CENSG00000042062.71709.361301183.534900.530308.786506.35570K562BCCIP
FAM65CENSG00000042062.71523.902601143.693100.414006.325004.84960K562BCLAF1
FAM65CENSG00000042062.71196.96500867.661600.464105.722104.12370K562CSTF2
FAM65CENSG00000042062.71887.304001542.658400.290803.254001.93520K562DDX21
FAM65CENSG00000042062.71236.164801002.856000.301703.229801.78650K562DDX27
FAM65CENSG00000042062.71130.529001373.94670-0.281302.336301.38220K562DDX3X
FAM65CENSG00000042062.71958.946401468.322500.415806.950905.98290K562DDX47
FAM65CENSG00000042062.71744.490602505.06840-0.522009.739307.88580K562DKC1
FAM65CENSG00000042062.7515.62150817.69690-0.665306.536304.50250K562DNAJC21
FAM65CENSG00000042062.71915.062101051.998200.864205.262403.45930K562EEF2
FAM65CENSG00000042062.71634.032901016.179400.685204.620503.42510K562EFTUD2
FAM65CENSG00000042062.71842.056501509.001500.287603.377602.02770K562EIF2S1
FAM65CENSG00000042062.71041.578901700.40730-0.7071015.1333013.65380K562EIF2S2
FAM65CENSG00000042062.7756.57730575.731000.394003.292402.42750K562EIF3G
FAM65CENSG00000042062.71059.771701435.37530-0.437704.289703.26750K562EIF4A3
FAM65CENSG00000042062.71632.211801292.576100.336503.671502.30910K562EIF4B
FAM65CENSG00000042062.73053.168002582.519500.241402.330401.46320K562EIF4G2
FAM65CENSG00000042062.71231.12540828.724900.570906.193604.88880K562FIP1L1
FAM65CENSG00000042062.7434.59050581.35360-0.419802.490801.67980K562FMR1
FAM65CENSG00000042062.71218.993401492.71960-0.292303.171402.52990K562FXR1
FAM65CENSG00000042062.7204.20160582.96180-1.5134016.9372014.81640K562G3BP2
FAM65CENSG00000042062.7706.10060545.436700.372402.416801.67260K562GPKOW
FAM65CENSG00000042062.72720.516101685.612400.6905012.9177010.87100K562HNRNPA1
FAM65CENSG00000042062.71523.00320899.633900.7594011.7745010.61690K562HNRNPC
FAM65CENSG00000042062.71160.18750803.608700.529704.526703.02290K562HNRNPF
FAM65CENSG00000042062.72820.967001866.771700.5955012.4559010.59380K562HNRNPU
FAM65CENSG00000042062.7812.451201123.50070-0.467603.848702.91360K562HSPD1
FAM65CENSG00000042062.7335.00410465.79850-0.475502.145701.33550K562KRR1
FAM65CENSG00000042062.71944.055902767.70360-0.509606.846405.29320K562MBNL1
FAM65CENSG00000042062.7688.03510532.417400.369802.322201.52270K562METAP2
FAM65CENSG00000042062.71768.588301250.412200.500105.479004.36330K562MTPAP
FAM65CENSG00000042062.71313.675601939.96400-0.562404.267403.10210K562NAA15
FAM65CENSG00000042062.71784.017001389.231500.360706.949205.84220K562NSUN2
FAM65CENSG00000042062.71444.14780920.899500.649004.120702.92050K562PCBP2
FAM65CENSG00000042062.72236.716501547.273200.531603.907102.91860K562PCBP3
FAM65CENSG00000042062.72395.049301847.214200.374602.919901.32150K562PKM
FAM65CENSG00000042062.71713.801501186.867200.529906.011604.83430K562POLR2G
FAM65CENSG00000042062.7989.87940806.681300.295202.093201.31760K562PSIP1
FAM65CENSG00000042062.71805.090802997.64450-0.7318013.9341011.48210K562PUM1
FAM65CENSG00000042062.7946.616702308.69420-1.2862027.8071026.07230K562PUS1
FAM65CENSG00000042062.7758.26530606.064100.323102.392901.60030K562SF3B4
FAM65CENSG00000042062.7823.68750629.337100.388202.772301.71940K562SRSF4
FAM65CENSG00000042062.7909.657001190.38150-0.388003.352702.44950K562SYNCRIP
FAM65CENSG00000042062.7298.90200572.23630-0.936902.874601.37660K562TAF15
FAM65CENSG00000042062.71706.25240997.805800.773905.547904.52830K562TARDBP
FAM65CENSG00000042062.71570.50900962.547100.706207.778106.29980K562TIA1
FAM65CENSG00000042062.71149.72340775.854300.567304.937603.65450K562TIAL1
FAM65CENSG00000042062.71363.53900945.001500.528904.300702.89000K562TRA2A
FAM65CENSG00000042062.71049.56770824.595700.347902.417701.54370K562TRIM56
FAM65CENSG00000042062.7307.71070564.95160-0.876603.514602.24910K562U2AF1
FAM65CENSG00000042062.7332.87190583.51390-0.809809.411007.92780K562U2AF2
FAM65CENSG00000042062.71111.656901473.03870-0.406106.070405.05480K562UPF1
FAM65CENSG00000042062.71804.305301260.421200.517406.843205.42860K562WDR3
FAM65CENSG00000042062.72235.895101310.770600.7703018.7901016.87190K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM65C is not available on ENCORE database.





11 RBPs can affect the splicing of FAM65C :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFAM65CENSG00000042062.7chr20-492114334921163849211089492112514921190549212041-0.427000.000000.00002excludedK562SRSF1
SEFAM65CENSG00000042062.7chr20-492114334921163849211089492112514921190549212041-0.185000.000400.08925excludedK562PUM1
SEFAM65CENSG00000042062.7chr20-492186084921918149214116492142474922118149221311-0.081000.005590.05093excludedK562AQR
SEFAM65CENSG00000042062.7chr20-492114984921163849211089492112514921190549212015-0.252000.000210.06719excludedK562UCHL5
SEFAM65CENSG00000042062.7chr20-492114334921163849211089492112514921190549212041-0.199000.000140.03244excludedK562EIF4G2
SEFAM65CENSG00000042062.7chr20-4921235949212433492119054921204149212676492128000.517000.000000.00000includedK562HNRNPU
SEFAM65CENSG00000042062.7chr20-4921149849211638492110894921125149211905492120150.226000.003650.09957includedK562HNRNPU
SEFAM65CENSG00000042062.7chr20-492114334921163849211089492112514921190549212041-0.315000.001340.05022excludedK562PTBP1
SEFAM65CENSG00000042062.7chr20-492123594921243349211905492120414921267649212800-0.126000.002810.04432excludedK562HNRNPC
SEFAM65CENSG00000042062.7chr20-492254484922549249225149492252754922582949225893-0.287000.000190.00460excludedK562HNRNPC
A3SSFAM65CENSG00000042062.7chr20-4921270949212926492127094921280049214116492142470.288000.000010.00176longerK562AGGF1
A3SSFAM65CENSG00000042062.7chr20-4921108949211334492110894921125149211905492120150.289000.000040.02304longerK562HNRNPU
A3SSFAM65CENSG00000042062.7chr20-492127094921292649212709492128004921411649214268-0.307000.000140.04057shorterK562TARDBP
A3SSFAM65CENSG00000042062.7chr20-4921270949212926492127094921280049214116492142680.208000.000950.09338longerK562RBM15
A3SSFAM65CENSG00000042062.7chr20-4922544849225561492254484922549249225829492258930.161000.000040.00810longerK562RBM15
MXEFAM65CENSG00000042062.7chr20-49212676492128004921411649214247492119054921204149218608492191810.404000.000000.000501includedK562HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FAM65C is not avaliable on ENCORE database.