BRD9

General Information

Gene Name       : BRD9
Gene ID             : ENSG00000028310.17
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: BRD9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878BRD9ENSG00000028310.1723.7024.4624.08ENCSR000AEF
HepG2BRD9ENSG00000028310.1719.1315.3217.23ENCSR985KAT
K562BRD9ENSG00000028310.1739.5033.4636.48ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for BRD9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • BRD9 RNA is bound by 42 proteins.  







eCLIP assay for BRD9 is not avaliable on ENCORE database.





42 proteins are bound to BRD9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5871633871697-3'-UTR,CDS,intron-Distal,intron-Proximal3.583524.57180HepG2AQR
chr5878466878506-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.182173.70975K562UCHL5
chr5870651870721-3'-UTR,CDS,intron-Distal,intron-Proximal5.603317.81430K562AQR
chr5884037884099-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.057414.23295HepG2GRWD1
chr5884099884170-3'-UTR,5'-UTR,CDS,intron-Distal3.258463.79741HepG2GRWD1
chr5884145884186-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.817266.70085HepG2PPIG
chr5884138884186-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.008143.55800HepG2BCLAF1
chr5884033884166-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.174045.02671K562PUM1
chr5889142889206-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.204655.05331K562GRWD1
chr5884024884090-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.081474.40420HepG2PPIG
chr5871618871705-3'-UTR,CDS,intron-Distal,intron-Proximal3.716038.04398K562AQR
chr5876278876334-3'-UTR,CDS,intron-Distal,intron-Proximal3.861804.14015K562DDX24
chr5884060884182-3'-UTR,5'-UTR,CDS,intron-Distal3.167129.21267K562UCHL5
chr5876297876352-3'-UTR,CDS,intron-Distal,intron-Proximal5.162636.83960K562AQR
chr5884148884165-3'-UTR,5'-UTR,CDS,intron-Distal3.913133.30664K562NONO
chr5889728889785-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.183429.29543K562AQR
chr5889704889773-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.130834.69071HepG2GRWD1
chr5878460878519-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.509895.47500HepG2PPIG
chr5889144889266-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.9320815.86208K562ZNF622
chr5889130889240-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.479407.95223HepG2BCLAF1
chr5884038884056-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.391967.13900K562AQR
chr5889082889185-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.8130010.55329K562PRPF8
chr5889655889723-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.207609.66400K562AQR
chr5870584870623-3'-UTR,CDS,intron-Distal,intron-Proximal3.647443.93645HepG2PPIG
chr5871641871682-3'-UTR,CDS,intron-Distal,intron-Proximal4.267183.79199HepG2PPIG
chr5889136889214-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.128917.68540K562UCHL5
chr5889664889733-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.950555.73990HepG2PRPF8
chr5878462878558-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.774445.74135K562DDX24
chr5871635871692-3'-UTR,CDS,intron-Distal,intron-Proximal3.279684.14020K562BUD13
chr5883998884065-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.391227.09156HepG2PRPF8
chr5891753891805-5'-UTR,CDS,intron-Distal,intron-Proximal4.7996911.30042K562ZNF622
chr5891754891803-5'-UTR,CDS,intron-Distal,intron-Proximal3.666633.14726K562SRSF7
chr5891752891858-5'-UTR,CDS,intron-Distal,intron-Proximal5.0501618.11609K562TRA2A
chr5891351891403-5'-UTR,CDS,intron-Distal,intron-Proximal4.9247210.62290K562ZNF622
chr5891264891351-5'-UTR,CDS,intron-Distal,intron-Proximal4.357496.70013HepG2ZNF800
chr5891269891351-5'-UTR,CDS,intron-Distal,intron-Proximal5.4133130.87803K562ZNF622
chr5881181881256-5'-UTR,CDS,intron-Distal,intron-Proximal3.334216.55928HepG2PRPF8
chr5891324891349-5'-UTR,CDS,intron-Distal3.097533.30959HepG2AQR
chr5891268891360-5'-UTR,CDS,intron-Distal,intron-Proximal3.012876.38443HepG2BCLAF1
chr5892777892909-5'-UTR,intron-Distal4.411965.18972HepG2GRWD1
chr5891346891383-5'-UTR,CDS,intron-Distal6.2731019.71457K562UCHL5
chr5891376891402-5'-UTR,CDS,intron-Distal3.341145.40162K562TRA2A
chr5891883891964-5'-UTR,CDS,intron-Distal,intron-Proximal3.077217.36535K562ZNF622
chr5887469887577-5'-UTR,CDS,intron-Distal,intron-Proximal4.480338.47938HepG2BCLAF1
chr5891272891346-5'-UTR,CDS,intron-Distal6.0777029.24730K562UCHL5
chr5887450887578-5'-UTR,CDS,intron-Distal,intron-Proximal3.334345.73981HepG2GRWD1
chr5891272891397-5'-UTR,CDS,intron-Distal4.489267.94477HepG2GRWD1
chr5891753891802-5'-UTR,CDS,intron-Distal,intron-Proximal5.3506919.31221K562UCHL5
chr5891752891796-5'-UTR,CDS,intron-Distal,intron-Proximal3.479407.61685HepG2PPIG
chr5892246892293-5'-UTR,intron-Distal3.184883.18246K562PRPF8
chr5891297891324-5'-UTR,CDS,intron-Distal3.069243.30959HepG2AQR
chr5891287891378-5'-UTR,CDS,intron-Distal3.8067916.18903K562PUM1
chr5891287891393-5'-UTR,CDS,intron-Distal4.408215.23978HepG2PRPF4
chr5891378891403-5'-UTR,CDS,intron-Distal,intron-Proximal3.294207.83839HepG2PPIG
chr5891253891347-5'-UTR,CDS,intron-Distal,intron-Proximal3.7579311.06867HepG2BUD13
chr5891338891378-5'-UTR,CDS,intron-Distal4.281704.62090HepG2SRSF1
chr5891904891957-5'-UTR,CDS,intron-Distal,intron-Proximal4.054643.46499K562TRA2A
chr5891378891405-5'-UTR,CDS,intron-Distal,intron-Proximal4.060789.14494K562PUM1
chr5892758892821-5'-UTR,CDS,intron-Distal,intron-Proximal5.028934.11950K562DDX3X
chr5891347891378-5'-UTR,CDS,intron-Distal3.691189.24355HepG2PPIG
chr5881285881345-5'-UTR,CDS,intron-Distal,intron-Proximal4.5189411.25257HepG2SF3B4
chr5892464892541-5'-UTR,intron-Distal3.632104.16174HepG2PRPF8
chr5892521892633-5'-UTR,intron-Distal4.808516.11596HepG2PRPF4
chr5891911891961-5'-UTR,CDS,intron-Distal,intron-Proximal3.820493.56019HepG2GRWD1
chr5892492892652-5'-UTR,intron-Distal,intron-Proximal3.359905.96785K562GTF2F1
chr5891753891778-5'-UTR,CDS,intron-Distal,intron-Proximal3.242076.31407K562PUM1
chr5891328891403-5'-UTR,CDS,intron-Distal,intron-Proximal4.774264.99268HepG2TRA2A
chr5891381891403-5'-UTR,CDS,intron-Distal,intron-Proximal3.042725.24703K562BUD13
chr5881259881343-5'-UTR,CDS,intron-Distal,intron-Proximal4.7989118.68019K562SF3B4
chr5881271881341-5'-UTR,CDS,intron-Distal,intron-Proximal4.5581123.97902HepG2SF3A3
chr5881213881253-5'-UTR,CDS,intron-Distal,intron-Proximal3.745643.05161HepG2PPIG
chr5891750891787-5'-UTR,CDS,intron-Distal,intron-Proximal4.322054.76758K562SRSF1
chr5891383891403-5'-UTR,CDS,intron-Distal,intron-Proximal6.0614915.55023K562UCHL5
chr5891405891433-5'-UTR,intron-Distal,intron-Proximal4.285724.27476HepG2AQR
chr5881219881309-5'-UTR,CDS,intron-Distal,intron-Proximal3.217494.22889HepG2SRSF1
chr5891272891347-5'-UTR,CDS,intron-Distal3.7250817.90208HepG2PPIG
chr5891805891870-5'-UTR,CDS,intron-Distal4.6173610.01989K562UCHL5
chr5886658886722-5'-UTR,CDS,intron-Distal,intron-Proximal3.564383.88924K562PRPF8
chr5891709891758-5'-UTR,CDS,intron-Distal,intron-Proximal4.048067.26133HepG2PRPF8
chr5886701886814-5'-UTR,CDS,intron-Distal,intron-Proximal3.185625.00905HepG2BCLAF1
chr5891745891813-5'-UTR,CDS,intron-Distal,intron-Proximal4.770034.39935HepG2TRA2A
chr5891274891348-5'-UTR,CDS,intron-Distal3.4473213.56387K562GRWD1
chr5861126861194-intron-Distal4.924365.74291HepG2FAM120A
chr5875942875998-intron-Distal4.478053.91475K562PTBP1
chr5856258856324-intron-Distal5.611257.07160K562EIF4G2
chr5883111883155-intron-Distal4.1340710.92788K562EXOSC5
chr5882502882547-intron-Distal4.4591415.91698K562TARDBP
chr5882538882681-intron-Distal,intron-Proximal5.5373314.45696K562FUS
chr5882599882642-intron-Distal4.2837414.06020K562TARDBP
chr5866213866343-intron-Distal4.7477012.11829K562HNRNPM
chr5881992882036-intron-Distal5.7347116.29438K562EIF4G2
chr5882427882497-intron-Distal6.5970054.14705K562EIF4G2
chr5853048853141-intron-Distal4.201823.09122HepG2PTBP1
chr5885497885562-intron-Distal4.4628910.56271K562NONO
chr5856278856381-intron-Distal4.101948.49253K562TARDBP
chr5883037883098-intron-Distal,intron-Proximal6.1666146.89907K562EIF4G2
chr5881609881661-intron-Distal5.6758915.32107K562EIF4G2
chr5884221884311-intron-Distal,intron-Proximal4.285825.71019K562FUS
chr5883169883231-intron-Distal5.102146.71101HepG2HNRNPM
chr5882263882317-intron-Distal3.735278.90751K562CSTF2T
chr5883041883083-intron-Distal,intron-Proximal4.580563.91671HepG2RBFOX2
chr5887119887228-intron-Distal,intron-Proximal3.101306.58484K562RBM15
chr5876169876216-intron-Distal,intron-Proximal4.1456213.85817HepG2PRPF8
chr5883706883754-intron-Distal3.079414.77325K562NONO
chr5882784882827-intron-Distal6.3072314.11953HepG2DKC1
chr5883158883257-intron-Distal5.306458.51902HepG2IGF2BP1
chr5871529871618-intron-Distal,intron-Proximal4.7905810.08262K562AQR
chr5882179882237-intron-Distal3.787313.60936K562FUS
chr5882933882985-intron-Distal,intron-Proximal3.385314.09794HepG2IGF2BP1
chr5881927881987-intron-Distal4.1320010.45195K562NONO
chr5882540882663-intron-Distal,intron-Proximal3.487798.75068K562RBFOX2
chr5883037883139-intron-Distal,intron-Proximal7.2168843.77347K562TARDBP
chr5882663882749-intron-Distal,intron-Proximal4.580556.91279K562RBFOX2
chr5882777882844-intron-Distal6.2839340.23093K562EIF4G2
chr5891226891269-intron-Distal,intron-Proximal5.103884.68690HepG2PRPF8
chr5860939861003-intron-Distal4.115484.27402K562CSTF2T
chr5884857884935-intron-Distal3.242744.50097K562FUS
chr5882207882264-intron-Distal5.140659.31104K562NONO
chr5881846881905-intron-Distal5.146588.09947K562NONO
chr5883163883250-intron-Distal4.9264313.36915K562HNRNPM
chr5878374878421-intron-Distal,intron-Proximal5.600738.88118K562AQR
chr5883013883110-intron-Distal,intron-Proximal3.575745.16661K562IGF2BP1
chr5883057883101-intron-Distal,intron-Proximal3.423565.84375K562RBFOX2
chr5883038883085-intron-Distal,intron-Proximal4.256243.67527K562SMNDC1
chr5883156883227-intron-Distal3.864879.07337HepG2FAM120A
chr5882762882820-intron-Distal3.929109.48840K562CSTF2T
chr5882523882650-intron-Distal5.0861013.36379K562HNRNPM
chr5883976884038-intron-Distal,intron-Proximal4.2663310.58560K562AQR
chr5882760882923-intron-Distal7.3719651.42847K562TARDBP
chr5883649883706-intron-Distal,intron-Proximal3.9393610.83424K562NONO
chr5882766882839-intron-Distal4.018086.85665K562RBFOX2
chr5861010861053-intron-Distal4.916273.26170K562EIF4G2
chr5882427882505-intron-Distal6.3271821.34543K562EXOSC5
chr5876144876169-intron-Distal,intron-Proximal3.568946.34662HepG2PRPF8
chr5891235891270-intron-Distal,intron-Proximal7.3714435.46770K562AQR
chr5856235856278-intron-Distal4.497115.44904K562TARDBP
chr5882730882781-intron-Distal,intron-Proximal3.290424.17016K562HNRNPM
chr5881632881695-intron-Distal3.422063.72904K562EXOSC5
chr5881931881965-intron-Distal5.0716915.32498K562EIF4G2
chr5882853882905-intron-Distal4.098108.46178K562CSTF2T
chr5882323882384-intron-Distal6.6647130.08927K562TARDBP
chr5866343866437-intron-Distal3.995685.29169K562HNRNPM
chr5881987882037-intron-Distal3.308668.12193K562NONO
chr5882945883001-intron-Distal,intron-Proximal5.5177115.28329HepG2DKC1
chr5882047882078-intron-Distal4.4158813.53984K562EIF4G2
chr5882752882836-intron-Distal,intron-Proximal5.047014.61859K562IGF2BP1
chr5882537882637-intron-Distal3.116525.07860K562FAM120A
chr5882395882430-intron-Distal4.974707.00800K562CSTF2T
chr5883653883704-intron-Distal,intron-Proximal3.174753.72060K562HNRNPM
chr5883139883273-intron-Distal5.8423446.93461K562TARDBP
chr5884837884876-intron-Distal4.578205.66217K562NONO
chr5891730891745-intron-Distal,intron-Proximal4.9860711.82040K562AQR
chr5882431882502-intron-Distal5.2348829.82019K562TARDBP
chr5882911883013-intron-Distal,intron-Proximal5.892019.63985K562IGF2BP1
chr5882436882497-intron-Distal4.5810911.86476K562HNRNPM
chr5883044883126-intron-Distal,intron-Proximal6.0766821.29332HepG2DKC1
chr5882844882895-intron-Distal5.5766233.15893K562EIF4G2
chr5860962861026-intron-Distal5.047445.74291HepG2FAM120A
chr5891712891730-intron-Distal,intron-Proximal5.1348113.79863K562AQR
chr5882721882777-intron-Distal,intron-Proximal5.9407332.33176K562EIF4G2
chr5882918883015-intron-Distal,intron-Proximal5.2182218.94836K562CSTF2T
chr5850725850785-5'-UTR,intron-Distal,intron-Proximal4.031943.98315HepG2SF3B4
chr5856878856895-intron-Distal4.879433.68818HepG2DKC1
chr5857061857122-intron-Distal4.500806.02873K562TARDBP
chr5881616881673-intron-Distal3.812933.15856K562FUS
chr5882830882900-intron-Distal3.9023511.44868K562EXOSC5
chr5882923883026-intron-Distal,intron-Proximal7.1558640.50985K562TARDBP
chr5857133857191-intron-Distal4.750847.44287K562TARDBP
chr5883960884040-intron-Distal,intron-Proximal4.3355712.82383HepG2RBM22
chr5882944883032-intron-Distal,intron-Proximal3.420713.40131HepG2RBFOX2
chr5857453857520-intron-Distal3.881303.70058K562CSTF2T
chr5882741882792-intron-Distal,intron-Proximal3.242443.48399HepG2CSTF2T
chr5883160883229-intron-Distal3.380094.79181K562FAM120A
chr5882913883031-intron-Distal,intron-Proximal4.014318.60372K562FUS
chr5882512882652-intron-Distal4.145563.87186HepG2SRSF7
chr5891229891270-intron-Distal,intron-Proximal4.800004.92499HepG2AQR
chr5882933882986-intron-Distal,intron-Proximal3.424094.21158HepG2CSTF2T
chr5882384882431-intron-Distal5.3842221.17200K562TARDBP
chr5883028883108-intron-Distal,intron-Proximal4.8630413.64236K562CSTF2T
chr5882422882538-intron-Distal4.874758.58050K562FUS
chr5856154856231-intron-Distal3.417333.92299HepG2CSTF2T
chr5856329856472-intron-Distal3.003824.18967K562KHSRP
chr5882547882599-intron-Distal6.2172820.52147K562TARDBP
chr5882919883022-intron-Distal,intron-Proximal3.9976117.13083K562EXOSC5
chr5882746882832-intron-Distal,intron-Proximal3.891968.24222HepG2FAM120A
chr5882542882654-intron-Distal5.3535328.75308K562EXOSC5
chr5861114861197-intron-Distal5.569746.10540K562EIF4G2
chr5856795856844-intron-Distal5.101695.14653K562EIF4G2
chr5853035853089-intron-Distal4.524603.91475K562PTBP1
chr5883093883153-intron-Distal3.247873.93430K562FUS
chr5882567882658-intron-Distal3.409515.18295HepG2RBFOX2
chr5882315882426-intron-Distal4.3420716.53867K562EWSR1
chr5861841861921-intron-Distal3.613735.08839HepG2CSTF2T
chr5885006885054-intron-Distal3.317784.98988K562NONO
chr5882436882474-intron-Distal3.664674.88931HepG2FAM120A
chr5882578882637-intron-Distal3.589953.37821K562XRCC6
chr5866139866204-intron-Distal4.572794.22343HepG2XPO5
chr5882652882760-intron-Distal,intron-Proximal5.4892438.30258K562TARDBP
chr5882695882738-intron-Distal,intron-Proximal4.805307.46616K562CSTF2T
chr5856559856645-intron-Distal5.000807.78973K562TARDBP
chr5882720882863-intron-Distal,intron-Proximal5.330229.55124HepG2IGF2BP1
chr5883088883157-intron-Distal3.216375.74509K562EWSR1
chr5882435882496-intron-Distal3.325777.45842HepG2HNRNPM
chr5874612874686-intron-Distal4.091593.84389HepG2SUGP2
chr5882839882903-intron-Distal3.742574.81973K562RBFOX2
chr5882530882641-intron-Distal3.5727111.51011HepG2FAM120A
chr5856177856291-intron-Distal3.893096.60399K562CSTF2T
chr5857458857527-intron-Distal3.948886.49292HepG2CSTF2T
chr5882936882996-intron-Distal,intron-Proximal4.631554.03918HepG2SRSF7
chr5856690856914-intron-Distal6.1045017.80911K562TARDBP
chr5856645856719-intron-Distal5.377964.67055K562EIF4G2
chr5881873881956-intron-Distal3.188323.23179HepG2RBFOX2
chr5882509882545-intron-Distal7.0162824.92890K562EIF4G2
chr5882582882651-intron-Distal7.2109125.44382HepG2DKC1
chr5883138883215-intron-Distal3.870213.28089HepG2SRSF7
chr5883146883262-intron-Distal6.1566274.42133K562EIF4G2
chr5882562882663-intron-Distal,intron-Proximal3.562338.97652K562GTF2F1
chr5885636885673-intron-Distal4.574095.42636K562NONO
chr5876198876216-intron-Distal,intron-Proximal6.5470719.16919K562AQR
chr5882222882227-intron-Distal4.156613.27946HepG2HNRNPM
chr5874048874111-intron-Distal4.1152211.44356HepG2HNRNPM
chr5882309882363-intron-Distal4.194067.83327K562NONO
chr5883153883268-intron-Distal4.833498.76588K562FUS
chr5882434882499-intron-Distal3.530818.66194K562CSTF2T
chr5882332882377-intron-Distal5.141756.61547K562HNRNPM
chr5866237866321-intron-Distal5.455568.29453HepG2XPO5
chr5882317882395-intron-Distal5.4275324.54533K562CSTF2T
chr5869848869925-intron-Distal3.254573.66782HepG2HNRNPM
chr5883157883242-intron-Distal4.248709.93860K562EWSR1
chr5856168856258-intron-Distal6.4614711.97023K562EIF4G2
chr5856930856981-intron-Distal5.911629.76558HepG2DKC1
chr5882925883000-intron-Distal,intron-Proximal5.2286945.23028K562EIF4G2
chr5882836882900-intron-Distal5.7976818.97348HepG2DKC1
chr5883043883151-intron-Distal,intron-Proximal4.186877.33618HepG2IGF2BP1
chr5882550882641-intron-Distal5.4708611.15932HepG2IGF2BP1
chr5882570882647-intron-Distal4.6331112.36140K562AATF
chr5876172876198-intron-Distal,intron-Proximal5.8311523.84012K562AQR
chr5856472856594-intron-Distal4.143944.37030K562KHSRP
chr5889587889649-intron-Distal,intron-Proximal3.1531911.14794K562AQR
chr5883161883246-intron-Distal3.6213510.40267K562CSTF2T
chr5882504882654-intron-Distal4.1555312.28544K562EWSR1
chr5857820857886-intron-Distal3.836125.08839HepG2CSTF2T
chr5882259882313-intron-Distal3.752583.60521K562FUS
chr5891180891235-intron-Distal,intron-Proximal6.1016642.46753K562AQR
chr5860958861010-intron-Distal5.718026.58769K562EIF4G2
chr5889601889648-intron-Distal,intron-Proximal3.399726.12893K562BUD13
chr5876132876202-intron-Distal,intron-Proximal3.368225.31369K562PRPF8
chr5883658883705-intron-Distal,intron-Proximal3.690756.12137K562CSTF2T
chr5861000861054-intron-Distal3.149323.27165HepG2RBFOX2
chr5882439882484-intron-Distal3.984283.57526HepG2IGF2BP1
chr5862598862651-intron-Distal3.131613.49516HepG2CSTF2T
chr5882938883002-intron-Distal,intron-Proximal5.3584112.72968K562AATF
chr5882565882640-intron-Distal3.550427.44912HepG2CSTF2T
chr5891745891754-intron-Distal,intron-Proximal4.8888911.03354K562AQR
chr5882828882913-intron-Distal3.100365.59336K562FUS
chr5882545882660-intron-Distal7.1109598.71351K562EIF4G2
chr5889580889663-intron-Distal,intron-Proximal3.797438.45500HepG2EFTUD2
chr5883033883120-intron-Distal,intron-Proximal3.000644.83431HepG2FAM120A
chr5882323882382-intron-Distal3.723963.13435HepG2STAU2
chr5882517882645-intron-Distal5.6712426.84206K562CSTF2T
chr5889902889946-intron-Distal,intron-Proximal4.323596.39176K562AQR
chr5882761882815-intron-Distal4.9023513.52140K562EXOSC5
chr5885072885167-intron-Distal4.035223.74713K562FUS
chr5881923881973-intron-Distal3.223635.12258K562CSTF2T
chr5876131876172-intron-Distal,intron-Proximal4.323596.39176K562AQR
chr5883031883093-intron-Distal,intron-Proximal3.495295.62613K562FUS
chr5882181882244-intron-Distal6.0290227.84473K562EIF4G2
chr5866204866314-intron-Distal4.552384.31871HepG2HNRNPM
chr5861583861643-intron-Distal3.429114.45183HepG2CSTF2T
chr5882937883088-intron-Distal,intron-Proximal4.1220414.24682K562EWSR1
chr5882681882828-intron-Distal,intron-Proximal4.216519.93155K562FUS
chr5873947874037-intron-Distal4.238073.53404K562HNRNPM
chr5885012885065-intron-Distal3.492754.22628K562EWSR1
chr5882752882898-intron-Distal,intron-Proximal4.634136.81262HepG2RBFOX2
chr5882325882389-intron-Distal8.0344052.14128K562EIF4G2
chr5857343857408-intron-Distal4.160046.03429HepG2CSTF2T
chr5866063866132-intron-Distal4.098754.02846K562HNRNPM
chr5882453882527-intron-Distal3.720165.63113K562RBFOX2
chr5882803882874-intron-Distal5.4889513.10130K562AATF
chr5883039883111-intron-Distal,intron-Proximal6.2819219.66775K562EXOSC5
chr5882928883026-intron-Distal,intron-Proximal3.718365.68931K562RBFOX2
chr5860563860621-intron-Distal3.745363.14687K562CSTF2T
chr5882930882993-intron-Distal,intron-Proximal3.367676.41767HepG2FAM120A
chr5878421878470-intron-Distal,intron-Proximal4.9220216.75572K562AQR
chr5882671882761-intron-Distal,intron-Proximal5.4867021.05526K562EXOSC5
chr5882340882427-intron-Distal4.5798115.17605K562EXOSC5
chr5882313882422-intron-Distal4.888489.18545K562FUS
chr5882160882184-intron-Distal3.170413.58549K562NONO
chr5860978861050-intron-Distal3.934843.73296HepG2IGF2BP1
chr5865697865750-intron-Distal,intron-Proximal4.258534.50924HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for BRD9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for BRD9 is not available on ENCORE database.

  • 77 RBPs can affect the levels of BRD9.  








The Knockdown/knockout RNA-Seq assay for BRD9 is not available on ENCORE database.





77 RBPs can affect the gene expression of BRD9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
BRD9ENSG00000028310.13734.05240570.407700.363803.540202.86780HepG2ACO1
BRD9ENSG00000028310.13540.54050397.220100.444402.082801.61390HepG2AKAP1
BRD9ENSG00000028310.13733.63960460.415000.672004.698703.47820HepG2BCCIP
BRD9ENSG00000028310.13329.94200547.83570-0.731505.869804.90140HepG2CPSF6
BRD9ENSG00000028310.13854.91560598.983600.513205.613804.75970HepG2CELF1
BRD9ENSG00000028310.13574.10090380.458100.593503.870803.14200HepG2DDX3X
BRD9ENSG00000028310.13784.71750452.685000.793606.461305.33850HepG2DDX55
BRD9ENSG00000028310.13461.05400334.278300.463804.081403.32020HepG2DNAJC2
BRD9ENSG00000028310.13450.03110314.177700.518302.772302.17810HepG2EIF2S1
BRD9ENSG00000028310.13627.85850347.148200.854807.191006.16020HepG2EIF4A3
BRD9ENSG00000028310.13786.04220338.102701.2170011.6653010.30060HepG2EIF4B
BRD9ENSG00000028310.131161.34310998.050600.218501.873601.35830HepG2ETF1
BRD9ENSG00000028310.13391.03060236.848900.723205.114204.05620HepG2FUBP3
BRD9ENSG00000028310.13744.91700350.424801.0879012.6071011.23620HepG2FXR1
BRD9ENSG00000028310.13541.07810324.982600.735405.469604.54810HepG2G3BP1
BRD9ENSG00000028310.13536.38860345.125400.636104.427303.28830HepG2G3BP2
BRD9ENSG00000028310.13958.12030329.279201.5408027.7045025.72730HepG2HNRNPK
BRD9ENSG00000028310.13697.14320586.508600.249202.156501.55120HepG2HNRNPL
BRD9ENSG00000028310.13587.86480410.839500.516803.857502.75340HepG2HNRNPM
BRD9ENSG00000028310.13544.84950696.88730-0.355102.465101.78020HepG2IGF2BP1
BRD9ENSG00000028310.13692.45320330.306501.0678011.9321010.63690HepG2IGF2BP2
BRD9ENSG00000028310.13583.63260310.104100.912203.491602.38500HepG2IGF2BP3
BRD9ENSG00000028310.13574.26680332.290300.789205.321503.88970HepG2KHSRP
BRD9ENSG00000028310.13856.94590643.803300.412502.133201.41130HepG2LARP4
BRD9ENSG00000028310.13610.65330350.547900.800606.727705.71850HepG2MAGOH
BRD9ENSG00000028310.13622.98800352.482700.821606.427805.49880HepG2MATR3
BRD9ENSG00000028310.13513.15990329.976400.636902.903901.82630HepG2METAP2
BRD9ENSG00000028310.13631.83950481.890300.390802.370401.61830HepG2MSI2
BRD9ENSG00000028310.13682.07410360.763600.918808.566607.48380HepG2NCBP2
BRD9ENSG00000028310.13955.02590638.507400.580707.834906.56920HepG2NOL12
BRD9ENSG00000028310.13629.48570415.690100.598602.445701.42340HepG2NONO
BRD9ENSG00000028310.13386.67030525.49360-0.442602.461001.75510HepG2NSUN2
BRD9ENSG00000028310.13638.83000321.182100.9919010.106108.74690HepG2PABPC4
BRD9ENSG00000028310.13498.49020372.375200.420703.212702.30750HepG2PARN
BRD9ENSG00000028310.13588.67460341.830600.7841010.587709.52450HepG2PCBP1
BRD9ENSG00000028310.13494.30060349.202700.501202.788501.97650HepG2PRPF8
BRD9ENSG00000028310.13669.08120347.864700.9436013.2049012.18730HepG2PTBP1
BRD9ENSG00000028310.13946.04040647.112500.547809.494008.53300HepG2PUM1
BRD9ENSG00000028310.13934.82070646.610700.531706.272905.27720HepG2PUM2
BRD9ENSG00000028310.13629.24170376.662300.740208.399307.40050HepG2QKI
BRD9ENSG00000028310.13594.90980398.099000.579402.473501.80560HepG2RAVER1
BRD9ENSG00000028310.131244.94690834.184200.577508.669407.87110HepG2RBM22
BRD9ENSG00000028310.13471.65470341.876900.464202.308301.68730HepG2RBM25
BRD9ENSG00000028310.13626.43280387.107300.694308.139207.29810HepG2NELFE
BRD9ENSG00000028310.13540.57460360.597100.584005.783204.93400HepG2RECQL
BRD9ENSG00000028310.13499.97690306.850200.704205.874605.01840HepG2RPS19
BRD9ENSG00000028310.13473.44520345.433000.454702.200701.49230HepG2RRP9
BRD9ENSG00000028310.13430.85240335.027600.362802.427601.81780HepG2SAFB2
BRD9ENSG00000028310.13963.51820616.795500.643404.479403.61030HepG2SF3A3
BRD9ENSG00000028310.13439.18790586.60000-0.417502.502601.82960HepG2SF3B1
BRD9ENSG00000028310.13619.89370362.101500.7755010.012908.99190HepG2SF3B4
BRD9ENSG00000028310.13582.47090390.692500.576106.688105.75630HepG2SMN1
BRD9ENSG00000028310.13387.17940652.69570-0.753404.493103.48630HepG2SNRNP70
BRD9ENSG00000028310.13573.37570377.984400.601106.230805.59110HepG2SRSF1
BRD9ENSG00000028310.13899.07320601.899400.578808.716807.68730HepG2SRSF5
BRD9ENSG00000028310.13500.11500695.29140-0.475404.813403.93490HepG2SRSF7
BRD9ENSG00000028310.13417.14170307.535200.439702.157901.65810HepG2SRSF9
BRD9ENSG00000028310.131104.67590684.477200.6904014.5464013.30240HepG2SUCLG1
BRD9ENSG00000028310.13455.09540339.827000.421303.062002.47620HepG2TAF15
BRD9ENSG00000028310.13453.40840312.170000.538403.139402.25360HepG2TIA1
BRD9ENSG00000028310.13551.72660365.534100.593805.287804.64230HepG2TIAL1
BRD9ENSG00000028310.13501.72600368.827400.443903.732403.09890HepG2TRIM56
BRD9ENSG00000028310.13787.36250595.582500.402602.352801.55370HepG2TUFM
BRD9ENSG00000028310.131038.05810630.465100.719306.832305.48760HepG2UBE2L3
BRD9ENSG00000028310.13428.48720266.204800.686604.809603.80300HepG2UCHL5
BRD9ENSG00000028310.13808.83500528.111200.614908.408607.45560HepG2UTP3
BRD9ENSG00000028310.13899.35850601.599500.580009.575008.71220HepG2ZNF622
BRD9ENSG00000028310.131862.919202273.08450-0.287101.995201.48170K562AQR
BRD9ENSG00000028310.131200.576601690.09030-0.493406.546004.70640K562CCDC124
BRD9ENSG00000028310.13949.449401194.91930-0.331802.739001.96080K562CPSF6
BRD9ENSG00000028310.131491.388701816.35320-0.284403.126302.36880K562EIF2S2
BRD9ENSG00000028310.131155.94550827.126700.482805.879404.73240K562EIF3G
BRD9ENSG00000028310.13884.702301098.99900-0.312902.226701.48710K562EIF4A3
BRD9ENSG00000028310.131417.784401142.910600.310803.297102.64500K562FXR1
BRD9ENSG00000028310.13503.23340807.46810-0.682204.918703.91320K562G3BP2
BRD9ENSG00000028310.131555.020901898.81950-0.288202.124601.42380K562HSPD1
BRD9ENSG00000028310.131227.454701604.86840-0.386802.790101.95490K562PCBP3
BRD9ENSG00000028310.13958.768301230.97610-0.360503.427902.52940K562POLR2G
BRD9ENSG00000028310.131434.08810983.489200.544107.103106.07590K562PTBP1
BRD9ENSG00000028310.132515.116903056.87900-0.281402.197701.47170K562PUF60
BRD9ENSG00000028310.131166.73340839.753700.474305.523804.28880K562SF3B4
BRD9ENSG00000028310.131435.82050975.727200.557205.758804.71580K562TARDBP
BRD9ENSG00000028310.131178.18160941.225200.323902.660401.85930K562TIA1
BRD9ENSG00000028310.132135.806602560.75750-0.261802.112501.36840K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for BRD9 is not available on ENCORE database.





19 RBPs can affect the splicing of BRD9 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEBRD9ENSG00000028310.13chr5-884052884185879908880004886706886822-0.310000.005710.08404excludedK562SRSF1
SEBRD9ENSG00000028310.13chr5-8693598695198655288656968705878706900.095000.004020.06273includedK562SF3B4
SEBRD9ENSG00000028310.13chr5-884052884185879908880004886706886822-0.213000.001110.02286excludedK562SF3B4
SEBRD9ENSG00000028310.13chr5-8693598695198655288656968705878706680.058000.006590.05832includedK562AQR
SEBRD9ENSG00000028310.13chr5-869359869509865528865696870587870690-0.111000.000330.03149excludedHepG2DDX3X
SEBRD9ENSG00000028310.13chr5-881221881297879908880004884052884185-0.115000.000660.08046excludedK562LARP4
SEBRD9ENSG00000028310.13chr5-8693598695198655288656968705878706900.119000.000740.01758includedK562U2AF1
SEBRD9ENSG00000028310.13chr5-8834658835658812218812978840528841850.273000.000870.09822includedK562HNRNPM
SEBRD9ENSG00000028310.13chr5-8693598695098655288656968705878706900.115000.000360.05393includedK562HNRNPM
SEBRD9ENSG00000028310.13chr5-8687218689198655288656968705878706680.067000.000640.04818includedK562HNRNPUL1
SEBRD9ENSG00000028310.13chr5-8693598695198655288656968705878706900.263000.000000.00000includedK562U2AF2
SEBRD9ENSG00000028310.13chr5-8834658835658812218812978840528841850.217000.003270.09155includedK562TARDBP
SEBRD9ENSG00000028310.13chr5-8693598695098655288656968705878706900.201000.000440.02144includedK562SF3B1
SEBRD9ENSG00000028310.13chr5-8834658835658812218812978840528841850.217000.001680.06593includedK562HNRNPK
A3SSBRD9ENSG00000028310.13chr5-8867068868828867068868228874758875860.202000.000490.04615longerK562AGGF1
A3SSBRD9ENSG00000028310.13chr5-8897018898818897018897628912698914020.461000.000000.00006longerK562U2AF2
A3SSBRD9ENSG00000028310.13chr5-8867068868828867068868228874758875860.328000.000010.00090longerK562U2AF2
A3SSBRD9ENSG00000028310.13chr5-889701889881889701889762891269891402-0.141000.000760.07740shorterK562FXR1
A3SSBRD9ENSG00000028310.13chr5-8867068868828867068868228874758875860.309000.000000.00007longerK562SF3B4
A3SSBRD9ENSG00000028310.13chr5-8897018898818897018897628912698914020.447000.000000.00010longerHepG2U2AF2
A3SSBRD9ENSG00000028310.13chr5-8897018898818897018897628912698914020.171000.005930.03357longerK562AQR
A3SSBRD9ENSG00000028310.13chr5-8784698786278784698786028799088800040.062000.001480.00986longerK562AQR
A3SSBRD9ENSG00000028310.13chr5-8762238764718762238763278784698786270.057000.000040.00039longerK562AQR
A3SSBRD9ENSG00000028310.13chr5-8891358893208891358892808897018898810.157000.000000.00002longerK562AQR
A3SSBRD9ENSG00000028310.13chr5-8714748717038714748716798762158763200.163000.000000.00000longerK562AQR
A3SSBRD9ENSG00000028310.13chr5-8867068868828867068868228874758875860.179000.000320.01893longerK562PUS1
A3SSBRD9ENSG00000028310.13chr5-889701889881889701889762891269891402-0.197000.000020.02888shorterK562SAFB
A3SSBRD9ENSG00000028310.13chr5-8897018898818897018897628912698914020.386000.000020.00178longerK562U2AF1
A3SSBRD9ENSG00000028310.13chr5-8867068868828867068868228874758875860.188000.000240.03297longerK562HNRNPC
A3SSBRD9ENSG00000028310.13chr5-886706886882886706886822887475887586-0.194000.000770.09316shorterK562PRPF8
MXEBRD9ENSG00000028310.13chr5-8812218812978840528841858799088800048867068868220.173000.001950.032941includedK562U2AF1
MXEBRD9ENSG00000028310.13chr5-8812218812978840528841858799088800048867068868220.176000.009680.090581includedK562U2AF2
MXEBRD9ENSG00000028310.13chr5-8812218812978840528841858799088800048867068868220.199000.001460.047371includedK562TAF15

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for BRD9 is not avaliable on ENCORE database.