CD46

General Information

Gene Name : CD46
Gene ID : ENSG00000117335.19
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CD46)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CD46	ENSG00000117335.19	98.98	65.55	82.27	ENCSR000AEF
HepG2	CD46	ENSG00000117335.19	85.23	160.78	123.00	ENCSR985KAT
K562	CD46	ENSG00000117335.19	107.70	137.62	122.66	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CD46 is not avaliable on ENCORE database.

Proteins bound to RNA

CD46 RNA is bound by 49 proteins.

CanvasJS.com

eCLIP assay for CD46 is not avaliable on ENCORE database.

49 proteins are bound to CD46 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	207941055	207941129	+	CDS,intron-Distal,intron-Proximal	4.30738	56.98983	K562	SF3B4
chr1	207943617	207943652	+	intron-Distal,intron-Proximal	6.76421	54.05050	K562	SF3B4
chr1	207947203	207947278	+	intron-Distal	5.41084	52.23441	K562	EXOSC5
chr1	207940531	207940621	+	CDS,intron-Proximal	4.07899	50.38062	K562	EFTUD2
chr1	207952383	207952432	+	intron-Distal	5.69815	49.97408	K562	EXOSC5
chr1	207940436	207940541	+	CDS,intron-Proximal	4.14582	46.54994	K562	SND1
chr1	207940554	207940578	+	intron-Proximal	5.59567	42.47263	K562	PRPF8
chr1	207940547	207940642	+	intron-Distal,intron-Proximal	4.68776	41.35636	K562	AQR
chr1	207943653	207943665	+	intron-Distal,intron-Proximal	5.17175	38.48496	K562	SF3B4
chr1	207940571	207940629	+	intron-Proximal	4.07186	37.81287	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 350 entries

eCLIP assay for CD46 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CD46 is not available on ENCORE database.
125 RBPs can affect the levels of CD46.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CD46 is not available on ENCORE database.

125 RBPs can affect the gene expression of CD46 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CD46	ENSG00000117335.14	2454.53790	6548.39240	-1.41570	106.15500	103.22230	HepG2	HNRNPU
CD46	ENSG00000117335.14	2676.76060	6878.82980	-1.36170	105.37560	102.56950	HepG2	UTP3
CD46	ENSG00000117335.14	6042.06270	14554.93850	-1.26840	99.45780	97.41350	HepG2	NELFE
CD46	ENSG00000117335.14	7372.77270	14212.50950	-0.94690	67.22460	65.60210	HepG2	SRSF1
CD46	ENSG00000117335.14	4505.53090	9074.59440	-1.01010	39.79870	37.65850	K562	FXR1
CD46	ENSG00000117335.14	7442.54650	13555.48310	-0.86500	37.27420	35.51140	HepG2	RECQL
CD46	ENSG00000117335.14	4578.34050	9701.13340	-1.08330	36.92960	35.45910	HepG2	RBM22
CD46	ENSG00000117335.14	7808.93090	13078.11170	-0.74400	33.95060	32.46830	HepG2	PTBP1
CD46	ENSG00000117335.14	14326.91740	9554.15220	0.58440	31.04480	29.20850	HepG2	SLBP
CD46	ENSG00000117335.14	6963.23600	3176.38780	1.13230	28.82940	26.92880	HepG2	CPSF6
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 155 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CD46 is not available on ENCORE database.

74 RBPs can affect the splicing of CD46 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	CD46	ENSG00000117335.14	chr1	+	207963597	207963690	207958963	207959027	207966863	207968858	0.17100	0.00000	included	HepG2	G3BP1
SE	CD46	ENSG00000117335.14	chr1	+	207941123	207941168	207940357	207940540	207943665	207943707	0.25900	0.00000	included	K562	SRSF1
SE	CD46	ENSG00000117335.14	chr1	+	207963597	207963690	207958963	207959027	207966863	207968858	0.40100	0.00000	included	K562	SRSF1
SE	CD46	ENSG00000117335.14	chr1	+	207963597	207963690	207958963	207959027	207966863	207968858	-0.14900	0.00000	excluded	K562	SF3B4
SE	CD46	ENSG00000117335.14	chr1	+	207963597	207963690	207958963	207959027	207966863	207968858	-0.12400	0.00555	excluded	HepG2	IGF2BP1
SE	CD46	ENSG00000117335.14	chr1	+	207941123	207941168	207940357	207940540	207943665	207943707	-0.12800	0.00023	excluded	K562	WDR3
SE	CD46	ENSG00000117335.14	chr1	+	207941123	207941168	207940357	207940540	207943665	207943707	-0.18600	0.00000	excluded	HepG2	U2AF1
SE	CD46	ENSG00000117335.14	chr1	+	207963597	207963690	207958963	207959027	207966863	207968858	-0.12300	0.00000	excluded	HepG2	U2AF1
SE	CD46	ENSG00000117335.14	chr1	+	207941123	207941168	207940357	207940540	207943665	207943707	-0.16000	0.00024	excluded	HepG2	PRPF8
SE	CD46	ENSG00000117335.14	chr1	+	207941123	207941168	207940357	207940540	207943665	207943707	-0.16100	0.00000	excluded	K562	AKAP8L

Showing 1 to 10 of 246 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CD46

General Information

Functions

Localization

Domains (AlphaFold: CD46)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CD46 is not avaliable on ENCORE database.

49 proteins are bound to CD46 RNA:

eCLIP assay for CD46 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CD46 is not available on ENCORE database.

125 RBPs can affect the gene expression of CD46 :

The Knockdown/knockout RNA-Seq assay for CD46 is not available on ENCORE database.

74 RBPs can affect the splicing of CD46 :

The Knockdown/knockout RNA-Seq assay for CD46 is not avaliable on ENCORE database.