RP11-474G23.1

General Information

Gene Name : RP11-474G23.1
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-474G23.1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-474G23.1 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-474G23.1 RNA is bound by 40 proteins.

CanvasJS.com

eCLIP assay for RP11-474G23.1 is not avaliable on ENCORE database.

40 proteins are bound to RP11-474G23.1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	68406192	68406270	-	3'-UTR,intron-Distal	4.61998	55.60429	K562	PUM2
chr2	68406026	68406074	-	3'-UTR,intron-Distal	4.29948	51.49617	K562	DDX6
chr2	68406025	68406074	-	3'-UTR,intron-Distal	5.06474	44.92919	K562	UPF1
chr2	68406736	68406816	-	3'-UTR,intron-Distal	4.23214	39.74834	K562	UPF1
chr2	68442562	68442633	-	intron-Distal	7.19801	35.16814	K562	EXOSC5
chr2	68406013	68406069	-	3'-UTR,intron-Distal	5.34401	31.04328	K562	TIA1
chr2	68442336	68442411	-	intron-Distal	5.26841	28.09908	K562	EXOSC5
chr2	68407624	68407732	-	3'-UTR,intron-Distal	3.75004	27.19131	K562	UPF1
chr2	68406074	68406113	-	3'-UTR,intron-Distal	6.84898	25.72087	K562	UPF1
chr2	68479477	68479580	-	5'-UTR,intron-Distal	5.14416	24.54196	HepG2	PCBP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 134 entries

eCLIP assay for RP11-474G23.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-474G23.1 is not available on ENCORE database.
21 RBPs can affect the levels of RP11-474G23.1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RP11-474G23.1 is not available on ENCORE database.

21 RBPs can affect the gene expression of RP11-474G23.1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-474G23.1	ENSG00000273398.1	20.64170	0.00000	99999.99990	5.60030	4.98670	HepG2	SRSF1
RP11-474G23.1	ENSG00000273398.1	16.68360	0.00000	99999.99990	5.20560	4.56420	HepG2	TIAL1
RP11-474G23.1	ENSG00000273398.1	15.39350	0.00000	99999.99990	5.36590	4.50210	HepG2	DNAJC2
RP11-474G23.1	ENSG00000273398.1	4.53390	29.69680	-2.71150	4.37430	3.71400	K562	PUS1
RP11-474G23.1	ENSG00000273398.1	16.46870	0.00000	99999.99990	4.55810	3.71170	HepG2	DDX21
RP11-474G23.1	ENSG00000273398.1	4.46760	28.76600	-2.68680	3.94760	3.29180	K562	AGGF1
RP11-474G23.1	ENSG00000273398.1	11.68540	0.00000	99999.99990	3.72510	3.09200	HepG2	TRIM56
RP11-474G23.1	ENSG00000273398.1	10.32270	0.00000	99999.99990	3.21400	2.56400	HepG2	HNRNPU
RP11-474G23.1	ENSG00000273398.1	0.00000	10.88540	-99999.99999	3.32420	2.45510	K562	GPKOW
RP11-474G23.1	ENSG00000273398.1	7.49900	31.60150	-2.07520	3.60940	2.44900	K562	AKAP8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 21 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-474G23.1 is not available on ENCORE database.

5 RBPs can affect the splicing of RP11-474G23.1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP11-474G23.1	ENSG00000273398.1	chr2	-	68414386	68414446			68413599	68413784	68415645	68415878	-0.10300	0.00000	0.00000	excluded	K562	AQR
A3SS	RP11-474G23.1	ENSG00000273398.1	chr2	-	68415645	68415878			68415645	68415822	68444223	68444263	0.06400	0.00000	0.00001	longer	K562	AQR
MXE	RP11-474G23.1	ENSG00000273398.1	chr2	-	68414386	68414446	68415645	68415878	68413599	68413784	68444223	68444263	0.10200	0.00000	0.00000	1included	K562	AQR
MXE	RP11-474G23.1	ENSG00000273398.1	chr2	-	68414386	68414446	68415645	68415874	68413599	68413784	68444223	68444263	0.09000	0.00000	0.00000	1included	K562	AQR
SE	RP11-474G23.1	ENSG00000273398.1	chr2	-	68414386	68414446			68413599	68413722	68415645	68415822	-0.10800	0.00008	0.01116	excluded	K562	SUPV3L1
A3SS	RP11-474G23.1	ENSG00000273398.1	chr2	-	68413599	68413784			68413599	68413722	68415645	68415822	-0.07800	0.00034	0.06898	shorter	K562	SUPV3L1
SE	RP11-474G23.1	ENSG00000273398.1	chr2	-	68368825	68368927			68365873	68365989	68371716	68371839	0.06500	0.00047	0.00737	included	HepG2	U2AF2
SE	RP11-474G23.1	ENSG00000273398.1	chr2	-	68414386	68414446			68413599	68413784	68415645	68415822	-0.05300	0.00054	0.01267	excluded	K562	SF3B4
MXE	RP11-474G23.1	ENSG00000273398.1	chr2	-	68414386	68414446	68415645	68415822	68413599	68413784	68444223	68444263	0.05800	0.00164	0.06807	1included	K562	SF3B1

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-474G23.1

General Information

Functions

Localization

Domains (AlphaFold: RP11-474G23.1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-474G23.1 is not avaliable on ENCORE database.

40 proteins are bound to RP11-474G23.1 RNA:

eCLIP assay for RP11-474G23.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-474G23.1 is not available on ENCORE database.

21 RBPs can affect the gene expression of RP11-474G23.1 :

The Knockdown/knockout RNA-Seq assay for RP11-474G23.1 is not available on ENCORE database.

5 RBPs can affect the splicing of RP11-474G23.1 :

The Knockdown/knockout RNA-Seq assay for RP11-474G23.1 is not avaliable on ENCORE database.