RP11-474G23.1

General Information

Gene Name : RP11-474G23.1
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-474G23.1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-474G23.1 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-474G23.1 RNA is bound by 40 proteins.

eCLIP assay for RP11-474G23.1 is not avaliable on ENCORE database.

40 proteins are bound to RP11-474G23.1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	68384345	68384545	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.19472	3.82000	HepG2	GRWD1
chr2	68384421	68384476	-	3'-UTR,CDS,intron-Distal	3.93401	3.67607	K562	YBX3
chr2	68364445	68364572	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.00755	5.36555	HepG2	BCLAF1
chr2	68365887	68365967	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.43056	3.71570	HepG2	BCLAF1
chr2	68415574	68415678	-	CDS,intron-Distal,intron-Proximal	3.21168	4.07440	K562	PRPF8
chr2	68440847	68440906	-	intron-Distal	4.02555	3.71397	K562	KHSRP
chr2	68407533	68407628	-	3'-UTR,intron-Distal	4.66148	9.59063	HepG2	UPF1
chr2	68406197	68406243	-	3'-UTR,intron-Distal	3.73256	4.59124	HepG2	FUBP3
chr2	68406192	68406270	-	3'-UTR,intron-Distal	4.61998	55.60429	K562	PUM2
chr2	68407414	68407450	-	3'-UTR,intron-Distal	3.64071	7.65557	K562	FAM120A
chr2	68416823	68416839	-	intron-Distal	3.83149	3.66668	K562	KHSRP
chr2	68407628	68407736	-	3'-UTR,intron-Distal	6.37937	21.73270	HepG2	UPF1
chr2	68407883	68407924	-	3'-UTR,intron-Distal,intron-Proximal	3.56901	5.37252	K562	YBX3
chr2	68452105	68452154	-	intron-Distal	3.21958	6.23972	K562	KHSRP
chr2	68442896	68442968	-	intron-Distal	3.59457	4.41421	K562	PTBP1
chr2	68442562	68442633	-	intron-Distal	7.19801	35.16814	K562	EXOSC5
chr2	68406023	68406106	-	3'-UTR,intron-Distal	3.48734	13.80452	HepG2	FUBP3
chr2	68406025	68406074	-	3'-UTR,intron-Distal	5.06474	44.92919	K562	UPF1
chr2	68432401	68432460	-	intron-Distal	4.43837	4.23668	K562	LIN28B
chr2	68416556	68416614	-	intron-Distal	3.94295	8.11138	K562	KHSRP
chr2	68479305	68479400	-	5'-UTR,intron-Distal	4.86510	7.08021	K562	HNRNPK
chr2	68406581	68406649	-	3'-UTR,intron-Distal	4.01505	7.60084	HepG2	UPF1
chr2	68479339	68479394	-	5'-UTR,intron-Distal	3.02335	6.47667	HepG2	DDX59
chr2	68479624	68479665	-	5'-UTR,intron-Distal,intron-Proximal	3.54500	7.73893	K562	DDX3X
chr2	68444081	68444169	-	intron-Distal,intron-Proximal	3.91729	3.48768	HepG2	KHSRP
chr2	68479561	68479667	-	5'-UTR,intron-Distal,intron-Proximal	3.38403	15.48893	HepG2	DDX3X
chr2	68406069	68406100	-	3'-UTR,intron-Distal	3.46947	4.77974	K562	TIA1
chr2	68442283	68442318	-	intron-Distal	5.16477	8.36716	K562	EXOSC5
chr2	68442427	68442473	-	intron-Distal	6.16296	17.32582	K562	EXOSC5
chr2	68479060	68479134	-	intron-Distal	3.56010	5.19749	HepG2	XRN2
chr2	68441168	68441203	-	intron-Distal	3.91602	8.47709	K562	EXOSC5
chr2	68442192	68442228	-	intron-Distal	5.05357	7.06230	K562	EXOSC5
chr2	68406649	68406734	-	3'-UTR,intron-Distal	4.26442	17.43328	K562	FAM120A
chr2	68479427	68479494	-	5'-UTR,intron-Distal	3.43461	4.57279	K562	PTBP1
chr2	68406020	68406095	-	3'-UTR,intron-Distal	3.29765	10.88111	K562	ZC3H11A
chr2	68479342	68479403	-	5'-UTR,intron-Distal	5.05152	8.98402	K562	PCBP1
chr2	68440662	68440687	-	intron-Distal	3.71903	5.20960	K562	EXOSC5
chr2	68466716	68466751	-	intron-Distal	4.05952	3.84389	HepG2	SUGP2
chr2	68479490	68479599	-	5'-UTR,intron-Distal	3.72105	12.73189	K562	PCBP1
chr2	68466475	68466521	-	intron-Distal	3.32156	4.08528	HepG2	SUGP2
chr2	68479338	68479401	-	5'-UTR,intron-Distal	3.48037	3.64078	HepG2	PCBP1
chr2	68465500	68465579	-	intron-Distal	4.76321	4.66737	HepG2	MATR3
chr2	68479477	68479580	-	5'-UTR,intron-Distal	5.14416	24.54196	HepG2	PCBP2
chr2	68441503	68441582	-	intron-Distal	5.37970	20.39543	K562	EXOSC5
chr2	68407525	68407617	-	3'-UTR,intron-Distal	3.46132	6.39870	HepG2	AKAP1
chr2	68428309	68428389	-	intron-Distal	4.43570	5.60468	K562	SAFB2
chr2	68441031	68441074	-	intron-Distal	3.66073	7.41097	K562	EXOSC5
chr2	68406738	68406801	-	3'-UTR,intron-Distal	4.54192	6.44805	K562	IGF2BP1
chr2	68442086	68442151	-	intron-Distal	4.49387	8.56038	K562	HNRNPM
chr2	68427395	68427471	-	intron-Distal	3.58022	3.01412	K562	SAFB2
chr2	68479625	68479670	-	5'-UTR,intron-Distal,intron-Proximal	3.96230	5.97588	K562	PCBP1
chr2	68442010	68442037	-	intron-Distal	3.67754	4.61282	K562	EXOSC5
chr2	68440596	68440637	-	intron-Distal	4.32315	8.21369	K562	EXOSC5
chr2	68406015	68406077	-	3'-UTR,intron-Distal	4.14426	9.99818	K562	APOBEC3C
chr2	68406034	68406080	-	3'-UTR,intron-Distal	4.74262	3.55542	HepG2	TIAL1
chr2	68407123	68407140	-	3'-UTR,intron-Distal	3.52341	6.25570	K562	UPF1
chr2	68441129	68441162	-	intron-Distal	3.24973	4.46810	K562	EXOSC5
chr2	68442509	68442624	-	intron-Distal	3.84196	9.25247	K562	HNRNPM
chr2	68406752	68406790	-	3'-UTR,intron-Distal	4.20886	3.54514	K562	TIA1
chr2	68479401	68479472	-	5'-UTR,intron-Distal	5.03957	6.56740	HepG2	PCBP1
chr2	68479154	68479219	-	intron-Distal	3.36040	7.88033	HepG2	NKRF
chr2	68479406	68479477	-	5'-UTR,intron-Distal	5.74391	18.97112	HepG2	PCBP2
chr2	68406744	68406817	-	3'-UTR,intron-Distal	3.73357	20.24982	K562	FAM120A
chr2	68406025	68406075	-	3'-UTR,intron-Distal	5.10888	7.33810	HepG2	TIA1
chr2	68479560	68479624	-	5'-UTR,intron-Distal	3.66129	14.16750	K562	DDX3X
chr2	68406195	68406248	-	3'-UTR,intron-Distal	3.33462	4.99882	K562	TIA1
chr2	68462019	68462108	-	intron-Distal	5.09166	4.99795	K562	QKI
chr2	68479167	68479201	-	intron-Distal	3.30326	5.47764	HepG2	XRN2
chr2	68408018	68408087	-	3'-UTR,intron-Distal,intron-Proximal	3.10651	5.02670	K562	TIA1
chr2	68440781	68440846	-	intron-Distal	4.73673	12.54948	K562	EXOSC5
chr2	68479585	68479628	-	5'-UTR,intron-Distal	4.24875	4.49279	K562	DROSHA
chr2	68426043	68426094	-	intron-Distal	3.84195	3.37923	K562	KHDRBS1
chr2	68441408	68441459	-	intron-Distal	4.23366	3.60235	HepG2	HNRNPM
chr2	68406689	68406736	-	3'-UTR,intron-Distal	4.56792	19.04148	K562	UPF1
chr2	68441203	68441275	-	intron-Distal	5.44603	20.06847	K562	EXOSC5
chr2	68407192	68407276	-	3'-UTR,intron-Distal	3.68142	13.90556	K562	FAM120A
chr2	68406986	68407059	-	3'-UTR,intron-Distal	3.18034	8.99323	K562	FAM120A
chr2	68406544	68406648	-	3'-UTR,intron-Distal	3.00264	8.02338	K562	FAM120A
chr2	68479574	68479666	-	5'-UTR,intron-Distal,intron-Proximal	3.95755	6.09067	HepG2	NCBP2
chr2	68406193	68406252	-	3'-UTR,intron-Distal	4.29594	3.84732	HepG2	TIA1
chr2	68406026	68406074	-	3'-UTR,intron-Distal	4.29948	51.49617	K562	DDX6
chr2	68407576	68407624	-	3'-UTR,intron-Distal	3.57482	14.79871	K562	UPF1
chr2	68406014	68406098	-	3'-UTR,intron-Distal	3.79743	5.74545	K562	CPEB4
chr2	68458188	68458269	-	intron-Distal	3.28854	3.95154	K562	SAFB2
chr2	68412461	68412536	-	intron-Distal	3.80295	3.08967	K562	KHDRBS1
chr2	68477172	68477226	-	intron-Distal	4.23932	4.10336	HepG2	SUGP2
chr2	68444095	68444161	-	intron-Distal,intron-Proximal	4.07089	7.54016	K562	TARDBP
chr2	68465880	68465936	-	intron-Distal	3.50048	4.36087	HepG2	MATR3
chr2	68442083	68442155	-	intron-Distal	4.06514	4.61500	HepG2	HNRNPM
chr2	68416614	68416677	-	intron-Distal	4.98951	9.15655	K562	KHSRP
chr2	68478967	68479028	-	intron-Distal	5.09574	7.75987	HepG2	XRN2
chr2	68406743	68406867	-	3'-UTR,intron-Distal	4.89591	15.10113	HepG2	UPF1
chr2	68406973	68407001	-	3'-UTR,intron-Distal	4.03366	4.32914	K562	YBX3
chr2	68407524	68407582	-	3'-UTR,intron-Distal	3.46098	12.16237	K562	FAM120A
chr2	68406698	68406804	-	3'-UTR,intron-Distal	3.79396	12.32481	HepG2	AKAP1
chr2	68451950	68452034	-	intron-Distal	4.22883	9.41035	K562	KHSRP
chr2	68406812	68406870	-	3'-UTR,intron-Distal	3.74848	5.14978	HepG2	AKAP1
chr2	68478344	68478432	-	intron-Distal,intron-Proximal	3.85909	4.77518	HepG2	U2AF2
chr2	68461734	68461808	-	intron-Distal	4.26399	6.86842	HepG2	U2AF2
chr2	68428632	68428734	-	intron-Distal	3.04502	3.46712	K562	SAFB2
chr2	68440639	68440695	-	intron-Distal	3.99686	3.90026	K562	KHSRP
chr2	68406736	68406816	-	3'-UTR,intron-Distal	4.23214	39.74834	K562	UPF1
chr2	68407516	68407576	-	3'-UTR,intron-Distal	3.87330	17.96067	K562	UPF1
chr2	68479077	68479154	-	intron-Distal	4.85801	10.22203	HepG2	NKRF
chr2	68407385	68407437	-	3'-UTR,intron-Distal	4.28058	3.87385	HepG2	AKAP1
chr2	68406077	68406124	-	3'-UTR,intron-Distal	3.14015	3.10134	K562	APOBEC3C
chr2	68478952	68479051	-	intron-Distal	4.89057	6.21911	K562	XRN2
chr2	68406013	68406069	-	3'-UTR,intron-Distal	5.34401	31.04328	K562	TIA1
chr2	68479403	68479471	-	5'-UTR,intron-Distal	3.18808	9.00262	K562	PCBP1
chr2	68413438	68413538	-	intron-Distal,intron-Proximal	3.51895	7.48221	K562	KHSRP
chr2	68406576	68406646	-	3'-UTR,intron-Distal	3.28117	12.86265	K562	UPF1
chr2	68406075	68406123	-	3'-UTR,intron-Distal	4.19568	4.87318	HepG2	TIA1
chr2	68406074	68406118	-	3'-UTR,intron-Distal	4.34665	23.01091	K562	DDX6
chr2	68443005	68443054	-	intron-Distal	4.81066	6.91139	HepG2	QKI
chr2	68444263	68444275	-	intron-Distal,intron-Proximal	3.48819	3.93753	K562	U2AF2
chr2	68413439	68413515	-	intron-Distal,intron-Proximal	3.95097	3.22073	HepG2	KHSRP
chr2	68477208	68477284	-	intron-Distal	4.30021	3.62238	HepG2	MATR3
chr2	68384285	68384387	-	intron-Distal,intron-Proximal	4.42859	4.48994	K562	RBM15
chr2	68462014	68462091	-	intron-Distal	3.82232	11.78347	HepG2	QKI
chr2	68407624	68407732	-	3'-UTR,intron-Distal	3.75004	27.19131	K562	UPF1
chr2	68479351	68479393	-	5'-UTR,intron-Distal	4.51283	7.31085	HepG2	PCBP2
chr2	68407636	68407721	-	3'-UTR,intron-Distal	5.26246	9.44144	HepG2	AKAP1
chr2	68406027	68406102	-	3'-UTR,intron-Distal	3.02511	5.06814	HepG2	UPF1
chr2	68406074	68406113	-	3'-UTR,intron-Distal	6.84898	25.72087	K562	UPF1
chr2	68440590	68440622	-	intron-Distal	3.59875	3.10641	K562	HNRNPM
chr2	68442336	68442411	-	intron-Distal	5.26841	28.09908	K562	EXOSC5
chr2	68452034	68452105	-	intron-Distal	4.09164	12.30466	K562	KHSRP
chr2	68433318	68433385	-	intron-Distal	4.34332	3.42734	K562	PTBP1
chr2	68406817	68406871	-	3'-UTR,intron-Distal	4.58220	19.99987	K562	UPF1
chr2	68405899	68405984	-	intron-Distal,intron-Proximal	3.06288	5.91447	HepG2	CSTF2
chr2	68416413	68416494	-	intron-Distal	3.16869	7.36118	K562	KHSRP
chr2	68441275	68441319	-	intron-Distal	4.52776	10.61559	K562	EXOSC5
chr2	68405908	68405966	-	intron-Distal,intron-Proximal	4.31000	5.01722	K562	CSTF2T
chr2	68440622	68440638	-	intron-Distal	3.55010	3.10641	K562	HNRNPM
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-474G23.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-474G23.1 is not available on ENCORE database.
21 RBPs can affect the levels of RP11-474G23.1.

The Knockdown/knockout RNA-Seq assay for RP11-474G23.1 is not available on ENCORE database.

21 RBPs can affect the gene expression of RP11-474G23.1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-474G23.1	ENSG00000273398.1	3.20020	19.82350	-2.63100	2.42510	1.77560	HepG2	CPSF6
RP11-474G23.1	ENSG00000273398.1	10.62480	0.00000	99999.99990	3.12180	1.89700	HepG2	DDX1
RP11-474G23.1	ENSG00000273398.1	16.46870	0.00000	99999.99990	4.55810	3.71170	HepG2	DDX21
RP11-474G23.1	ENSG00000273398.1	15.39350	0.00000	99999.99990	5.36590	4.50210	HepG2	DNAJC2
RP11-474G23.1	ENSG00000273398.1	8.01990	0.00000	99999.99990	2.04230	1.43630	HepG2	HNRNPC
RP11-474G23.1	ENSG00000273398.1	4.90100	21.44460	-2.12950	2.17260	1.60850	HepG2	HNRNPLL
RP11-474G23.1	ENSG00000273398.1	10.32270	0.00000	99999.99990	3.21400	2.56400	HepG2	HNRNPU
RP11-474G23.1	ENSG00000273398.1	6.94980	0.00000	99999.99990	1.84490	1.30420	HepG2	MAGOH
RP11-474G23.1	ENSG00000273398.1	7.56880	0.00000	99999.99990	2.17770	1.57360	HepG2	RBM25
RP11-474G23.1	ENSG00000273398.1	7.98880	0.00000	99999.99990	2.51930	1.89980	HepG2	SAFB2
RP11-474G23.1	ENSG00000273398.1	20.64170	0.00000	99999.99990	5.60030	4.98670	HepG2	SRSF1
RP11-474G23.1	ENSG00000273398.1	1.85300	15.89380	-3.10060	2.83320	1.53690	HepG2	SSRP1
RP11-474G23.1	ENSG00000273398.1	18.61250	2.31980	3.00410	2.69860	2.08250	HepG2	SUCLG1
RP11-474G23.1	ENSG00000273398.1	9.01150	0.00000	99999.99990	2.37110	1.44240	HepG2	TFIP11
RP11-474G23.1	ENSG00000273398.1	16.68360	0.00000	99999.99990	5.20560	4.56420	HepG2	TIAL1
RP11-474G23.1	ENSG00000273398.1	11.68540	0.00000	99999.99990	3.72510	3.09200	HepG2	TRIM56
RP11-474G23.1	ENSG00000273398.1	4.46760	28.76600	-2.68680	3.94760	3.29180	K562	AGGF1
RP11-474G23.1	ENSG00000273398.1	7.49900	31.60150	-2.07520	3.60940	2.44900	K562	AKAP8
RP11-474G23.1	ENSG00000273398.1	10.84940	29.93040	-1.46400	2.11110	1.53740	K562	AKAP8L
RP11-474G23.1	ENSG00000273398.1	0.00000	10.88540	-99999.99999	3.32420	2.45510	K562	GPKOW
RP11-474G23.1	ENSG00000273398.1	4.53390	29.69680	-2.71150	4.37430	3.71400	K562	PUS1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-474G23.1 is not available on ENCORE database.

5 RBPs can affect the splicing of RP11-474G23.1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP11-474G23.1	ENSG00000273398.1	chr2	-	68414386	68414446			68413599	68413784	68415645	68415822	-0.05300	0.00054	0.01267	excluded	K562	SF3B4
SE	RP11-474G23.1	ENSG00000273398.1	chr2	-	68368825	68368927			68365873	68365989	68371716	68371839	0.06500	0.00047	0.00737	included	HepG2	U2AF2
SE	RP11-474G23.1	ENSG00000273398.1	chr2	-	68414386	68414446			68413599	68413784	68415645	68415878	-0.10300	0.00000	0.00000	excluded	K562	AQR
SE	RP11-474G23.1	ENSG00000273398.1	chr2	-	68414386	68414446			68413599	68413722	68415645	68415822	-0.10800	0.00008	0.01116	excluded	K562	SUPV3L1
A3SS	RP11-474G23.1	ENSG00000273398.1	chr2	-	68413599	68413784			68413599	68413722	68415645	68415822	-0.07800	0.00034	0.06898	shorter	K562	SUPV3L1
A3SS	RP11-474G23.1	ENSG00000273398.1	chr2	-	68415645	68415878			68415645	68415822	68444223	68444263	0.06400	0.00000	0.00001	longer	K562	AQR
MXE	RP11-474G23.1	ENSG00000273398.1	chr2	-	68414386	68414446	68415645	68415822	68413599	68413784	68444223	68444263	0.05800	0.00164	0.06807	1included	K562	SF3B1
MXE	RP11-474G23.1	ENSG00000273398.1	chr2	-	68414386	68414446	68415645	68415878	68413599	68413784	68444223	68444263	0.10200	0.00000	0.00000	1included	K562	AQR
MXE	RP11-474G23.1	ENSG00000273398.1	chr2	-	68414386	68414446	68415645	68415874	68413599	68413784	68444223	68444263	0.09000	0.00000	0.00000	1included	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-474G23.1

General Information

Functions

Localization

Domains (AlphaFold: RP11-474G23.1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-474G23.1 is not avaliable on ENCORE database.

40 proteins are bound to RP11-474G23.1 RNA:

eCLIP assay for RP11-474G23.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-474G23.1 is not available on ENCORE database.

21 RBPs can affect the gene expression of RP11-474G23.1 :

The Knockdown/knockout RNA-Seq assay for RP11-474G23.1 is not available on ENCORE database.

5 RBPs can affect the splicing of RP11-474G23.1 :

The Knockdown/knockout RNA-Seq assay for RP11-474G23.1 is not avaliable on ENCORE database.