RFC1

General Information

Gene Name       : RFC1
Gene ID             : ENSG00000035928.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RFC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RFC1ENSG00000035928.1549.7646.1647.96ENCSR000AEF
HepG2RFC1ENSG00000035928.1553.0374.2463.63ENCSR985KAT
K562RFC1ENSG00000035928.1559.5357.5758.55ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RFC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RFC1 RNA is bound by 32 proteins.  







eCLIP assay for RFC1 is not avaliable on ENCORE database.





32 proteins are bound to RFC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr43928935439289416-3'-UTR,intron-Distal4.267534.68979HepG2UPF1
chr43932933239329365-3'-UTR,CDS,intron-Distal3.793479.50935HepG2BCLAF1
chr43928956339289683-3'-UTR,intron-Distal4.610066.11802HepG2AKAP1
chr43928949939289603-3'-UTR,intron-Distal4.520905.64948HepG2UPF1
chr43928930139289364-3'-UTR,intron-Distal4.796629.43510K562UPF1
chr43928949339289533-3'-UTR,intron-Distal3.217705.09741K562UPF1
chr43928985939289941-3'-UTR,intron-Distal5.4497112.49907K562PUM2
chr43928917539289233-3'-UTR,intron-Distal4.4069510.04737K562UPF1
chr43932918139329294-3'-UTR,CDS,intron-Distal,intron-Proximal4.7466421.08856HepG2BCLAF1
chr43932917639329219-3'-UTR,CDS,intron-Distal,intron-Proximal4.710463.22788K562XRCC6
chr43932918539329235-3'-UTR,CDS,intron-Distal,intron-Proximal4.481324.14322HepG2FXR2
chr43928955539289658-3'-UTR,intron-Distal4.8345110.58184K562UPF1
chr43928924839289300-3'-UTR,intron-Distal3.893324.40891K562FAM120A
chr43928941639289477-3'-UTR,intron-Distal3.878723.35877HepG2UPF1
chr43932915639329181-3'-UTR,CDS,intron-Distal,intron-Proximal3.343376.09950HepG2BCLAF1
chr43932915339329254-3'-UTR,CDS,intron-Distal,intron-Proximal3.520944.83522HepG2ZNF800
chr43928923339289301-3'-UTR,intron-Distal5.4634219.73459K562UPF1
chr43928964839289726-3'-UTR,intron-Distal4.3907014.10920HepG2QKI
chr43932914439329204-3'-UTR,CDS,intron-Distal,intron-Proximal4.074279.42122K562ZNF622
chr43929030939290370-3'-UTR,intron-Distal,intron-Proximal3.220374.09398HepG2GRWD1
chr43928924039289296-3'-UTR,intron-Distal4.087513.61011HepG2AKAP1
chr43928916139289223-3'-UTR,intron-Distal4.013835.46639K562FAM120A
chr43928976439289810-3'-UTR,intron-Distal4.115894.30417K562YBX3
chr43932925539329298-3'-UTR,CDS,intron-Distal4.089067.51551K562UCHL5
chr43936785939367928-5'-UTR,CDS,intron-Distal3.082589.10317K562ZNF622
chr43931448339314523-CDS,intron-Distal,intron-Proximal5.8088813.02740HepG2BCLAF1
chr43931037939310502-CDS,intron-Distal3.2773116.88203K562UCHL5
chr43931035239310515-CDS,intron-Distal4.5877534.66813HepG2BCLAF1
chr43934702239347083-CDS,intron-Distal3.589825.48341K562GRWD1
chr43934397239343997-CDS,intron-Distal3.702103.61259K562ZNF622
chr43934704739347096-CDS,intron-Distal3.226336.93682K562UCHL5
chr43935296839353016-CDS,intron-Distal,intron-Proximal3.304526.97987K562ZNF622
chr43932495939325004-CDS,intron-Distal,intron-Proximal4.481324.50566HepG2FXR2
chr43931308639313144-CDS,intron-Distal3.805547.45042K562UCHL5
chr43929325839293326-CDS,intron-Distal,intron-Proximal3.441924.31813HepG2G3BP1
chr43931052639310576-CDS,intron-Distal4.4384412.86440HepG2BCLAF1
chr43930823039308279-CDS,intron-Distal,intron-Proximal3.239208.80715HepG2BCLAF1
chr43929152839291583-CDS,intron-Distal3.128745.59833HepG2GRWD1
chr43935296739353028-CDS,intron-Distal,intron-Proximal4.8006216.52049HepG2BCLAF1
chr43929327339293337-CDS,intron-Distal3.163346.73967K562ZNF622
chr43930415339304185-CDS,intron-Distal5.4985910.12910HepG2BCLAF1
chr43934704239347096-CDS,intron-Distal4.7857115.55279HepG2BCLAF1
chr43930469239304709-CDS,intron-Distal,intron-Proximal4.187847.16838HepG2BCLAF1
chr43931031139310422-CDS,intron-Distal3.312935.58962K562RBM15
chr43930817039308214-CDS,intron-Distal,intron-Proximal4.853344.13847K562AQR
chr43929326039293273-CDS,intron-Distal3.018394.00731K562UCHL5
chr43930390739303954-CDS,intron-Distal3.322449.25770HepG2BCLAF1
chr43932818239328240-CDS,intron-Distal,intron-Proximal4.395618.60570K562ZNF622
chr43931051839310578-CDS,intron-Distal4.827265.41896HepG2FXR2
chr43931437039314382-CDS,intron-Distal,intron-Proximal3.222987.15230K562UCHL5
chr43931038839310487-CDS,intron-Distal3.730783.37921HepG2UCHL5
chr43932296539322993-CDS,intron-Distal3.957916.68017K562UCHL5
chr43934398339343998-CDS,intron-Distal4.161094.07072K562UCHL5
chr43931038539310427-CDS,intron-Distal3.307363.47312HepG2FXR2
chr43931438139314417-CDS,intron-Distal,intron-Proximal3.6510314.17599HepG2BCLAF1
chr43934702039347097-CDS,intron-Distal,intron-Proximal3.9700513.37200K562ZNF622
chr43935296739353017-CDS,intron-Distal,intron-Proximal3.755063.80897HepG2FXR2
chr43931314439313169-CDS,intron-Distal3.527948.64848K562UCHL5
chr43931060739310649-CDS,intron-Distal3.591089.41803HepG2BCLAF1
chr43932496539325037-CDS,intron-Distal3.680329.48271K562ZNF622
chr43934403739344087-CDS,intron-Distal3.686783.79741HepG2GRWD1
chr43932214239322223-CDS,intron-Distal5.118726.73025HepG2GRWD1
chr43929329339293347-CDS,intron-Distal3.6537611.76397HepG2BCLAF1
chr43935302539353096-CDS,intron-Distal,intron-Proximal3.340247.86771K562ZNF622
chr43929147239291528-CDS,intron-Distal3.805336.84754HepG2GRWD1
chr43931436939314401-CDS,intron-Distal,intron-Proximal4.444394.12522HepG2HLTF
chr43931042439310555-CDS,intron-Distal4.954306.00552HepG2G3BP1
chr43930411939304153-CDS,intron-Distal,intron-Proximal5.0337812.48233HepG2BCLAF1
chr43932215239322230-CDS,intron-Distal4.9577824.56431HepG2BCLAF1
chr43935301439353097-CDS,intron-Distal,intron-Proximal3.307827.07622HepG2AQR
chr43931860739318696-CDS,intron-Distal,intron-Proximal3.978206.39986K562SF3B4
chr43932500439325035-CDS,intron-Distal5.0624113.83301HepG2BCLAF1
chr43931854139318604-CDS,intron-Distal,intron-Proximal3.6121910.38320HepG2BCLAF1
chr43931437039314381-CDS,intron-Distal,intron-Proximal4.1472115.02931HepG2BCLAF1
chr43932820539328243-CDS,intron-Distal3.948827.58784HepG2BCLAF1
chr43931436939314417-CDS,intron-Distal,intron-Proximal3.140494.05316K562GRWD1
chr43932201739322120-CDS,intron-Distal,intron-Proximal,polyA_site4.6387018.88099HepG2BCLAF1
chr43929328239293340-CDS,intron-Distal3.668136.23335HepG2GRWD1
chr43931308739313134-CDS,intron-Distal5.3652715.62471HepG2BCLAF1
chr43931314739313170-CDS,intron-Distal,intron-Proximal4.086283.55983HepG2HLTF
chr43932496139325034-CDS,intron-Distal3.336068.83000K562UCHL5
chr43931315139313169-CDS,intron-Distal3.776509.50935HepG2BCLAF1
chr43934702139347025-CDS,intron-Distal5.241306.58593HepG2BCLAF1
chr43931310639313143-CDS,intron-Distal3.302114.92880K562ZNF622
chr43934404239344087-CDS,intron-Distal4.876039.74753HepG2BCLAF1
chr43932214239322224-CDS,intron-Distal4.4837614.76032K562UCHL5
chr43934704139347076-CDS,intron-Distal4.595054.69071HepG2GRWD1
chr43931860439318667-CDS,intron-Distal,intron-Proximal3.868858.66868K562BUD13
chr43930395439303992-CDS,intron-Distal3.9872311.60362HepG2BCLAF1
chr43932495939325004-CDS,intron-Distal,intron-Proximal5.6033221.13696HepG2BCLAF1
chr43931037939310480-CDS,intron-Distal4.9500813.34504K562ZNF622
chr43932213639322221-CDS,intron-Distal3.220367.06390K562ZNF622
chr43929325839293438-CDS,intron-Distal,intron-Proximal4.131973.01429K562IGF2BP1
chr43935305939353083-CDS,intron-Distal3.507034.49347K562UCHL5
chr43932495939325038-CDS,intron-Distal,intron-Proximal3.268426.58090K562AGGF1
chr43932495939324999-CDS,intron-Distal,intron-Proximal3.597647.37483HepG2HLTF
chr43929921939299267-intron-Distal4.888706.01148HepG2EFTUD2
chr43929922239299260-intron-Distal6.662048.88118K562AQR
chr43929921639299259-intron-Distal4.882843.84812HepG2DDX52
chr43929921739299262-intron-Distal3.534113.83898HepG2AGGF1
chr43929921739299222-intron-Distal5.455115.69951K562AQR
chr43929925539299260-intron-Distal7.3019630.02554HepG2BUD13
chr43930639039306419-intron-Distal,intron-Proximal4.819794.13847K562AQR
chr43929921539299222-intron-Distal8.1199040.39391K562SMNDC1
chr43929921739299232-intron-Distal6.6515216.39403K562RBM22
chr43929922239299266-intron-Distal5.9245814.70775HepG2PRPF8
chr43929921939299263-intron-Distal5.646184.12485HepG2SUPV3L1
chr43929922939299262-intron-Distal6.9517050.67644HepG2QKI
chr43930477439304827-intron-Distal,intron-Proximal4.9614110.60410K562AQR
chr43929922439299250-intron-Distal4.427915.03830HepG2SMNDC1
chr43929921539299261-intron-Distal4.770008.09084HepG2PPIG
chr43929922239299263-intron-Distal5.403627.06206K562QKI
chr43929926139299266-intron-Distal4.8498819.14023K562PRPF8
chr43929921839299262-intron-Distal3.740687.44037K562BUD13
chr43929922839299261-intron-Distal6.9805654.88057K562PRPF8
chr43929923239299261-intron-Distal6.6869416.81870K562RBM22
chr43929922239299226-intron-Distal8.2766450.56581K562SMNDC1
chr43930641939306433-intron-Distal,intron-Proximal4.582403.62536K562AQR
chr43930673839306832-intron-Distal3.694063.26999K562KHSRP
chr43929921939299265-intron-Distal4.049765.68074HepG2CDC40
chr43929922439299250-intron-Distal5.958548.39804K562LSM11
chr43929921539299261-intron-Distal5.382136.08255HepG2RBM22
chr43929922639299233-intron-Distal7.7047949.08822K562SMNDC1
chr43929923339299255-intron-Distal7.7069049.08822K562SMNDC1
chr43929921639299228-intron-Distal8.5237456.45618K562PRPF8
chr43929921639299229-intron-Distal6.9325049.95508HepG2QKI
chr43929922439299252-intron-Distal6.5547150.28953HepG2BUD13
chr43930667839306730-intron-Distal3.667993.24603K562KHSRP
chr43932108939321181-intron-Distal3.827013.22073HepG2KHSRP
chr43936768939367830-intron-Distal4.525445.90542HepG2PRPF4
chr43929928939299332-intron-Distal4.4601414.49512K562QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RFC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RFC1 is not available on ENCORE database.

  • 131 RBPs can affect the levels of RFC1.  








The Knockdown/knockout RNA-Seq assay for RFC1 is not available on ENCORE database.





131 RBPs can affect the gene expression of RFC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RFC1ENSG00000035928.102222.693802955.10430-0.410904.285603.56070HepG2ACO1
RFC1ENSG00000035928.102416.183604010.77730-0.731208.473007.59770HepG2AKAP1
RFC1ENSG00000035928.101791.231802969.19430-0.7291022.6435020.76070HepG2AKAP8L
RFC1ENSG00000035928.101548.584703318.68300-1.0997017.2210015.45080HepG2ASCC1
RFC1ENSG00000035928.103549.770804042.74660-0.187602.299101.66340HepG2AUH
RFC1ENSG00000035928.101457.029302491.64170-0.774108.236606.57510HepG2BCCIP
RFC1ENSG00000035928.101354.528902165.20000-0.676706.857705.51380HepG2BCLAF1
RFC1ENSG00000035928.102467.045003779.71730-0.615509.405708.38560HepG2BOP1
RFC1ENSG00000035928.102406.559003928.30580-0.7069016.1163014.52610HepG2CALR
RFC1ENSG00000035928.103458.987905333.68550-0.624805.097003.75460HepG2CCAR1
RFC1ENSG00000035928.102439.785003469.94540-0.508205.957004.98270HepG2CPSF6
RFC1ENSG00000035928.102077.486503300.39560-0.6678011.439209.37130HepG2CPSF7
RFC1ENSG00000035928.102009.721203551.56200-0.8215027.0300025.44870HepG2CELF1
RFC1ENSG00000035928.102674.315003818.80740-0.5140017.2447015.67880HepG2DAZAP1
RFC1ENSG00000035928.102226.240502733.16210-0.296004.998103.92210HepG2DDX19B
RFC1ENSG00000035928.102191.342302630.69280-0.263602.951501.76010HepG2DDX1
RFC1ENSG00000035928.101082.082502697.30330-1.3177014.5500013.13880HepG2DDX21
RFC1ENSG00000035928.101912.297503842.23920-1.0066014.4597013.14120HepG2DDX3X
RFC1ENSG00000035928.102239.719502799.55300-0.321902.579801.32570HepG2DDX47
RFC1ENSG00000035928.102074.160502552.21630-0.299202.774701.41790HepG2DDX52
RFC1ENSG00000035928.101454.097702449.71900-0.752507.935206.70500HepG2DDX55
RFC1ENSG00000035928.102255.386203300.04970-0.549105.095104.27940HepG2DDX6
RFC1ENSG00000035928.101828.303202487.97140-0.444505.036103.73550HepG2DHX30
RFC1ENSG00000035928.101525.792102579.52240-0.7575020.0367018.32520HepG2DNAJC21
RFC1ENSG00000035928.101492.796802556.84670-0.7763030.5813028.64370HepG2DNAJC2
RFC1ENSG00000035928.102377.389503045.31320-0.357202.912401.96880HepG2EEF2
RFC1ENSG00000035928.101740.626702538.91860-0.544606.014304.37870HepG2EFTUD2
RFC1ENSG00000035928.101751.068903172.92720-0.8576011.5977010.43500HepG2EIF2S1
RFC1ENSG00000035928.101679.166302472.23320-0.558105.406104.17390HepG2EIF3D
RFC1ENSG00000035928.102522.873503413.79810-0.436302.768302.07940HepG2EIF4B
RFC1ENSG00000035928.103270.935403767.48250-0.203902.648601.82620HepG2EIF4G1
RFC1ENSG00000035928.103390.434504641.50850-0.4531010.719109.66160HepG2ETF1
RFC1ENSG00000035928.101998.189402887.88490-0.531307.777906.38430HepG2EWSR1
RFC1ENSG00000035928.101676.344902209.32990-0.398304.890603.29920HepG2FAM120A
RFC1ENSG00000035928.102602.022203496.04710-0.426102.619901.53370HepG2FUS
RFC1ENSG00000035928.102682.830803537.37170-0.398903.503202.73050HepG2FXR1
RFC1ENSG00000035928.101671.356803281.82320-0.9735013.7054012.28710HepG2G3BP1
RFC1ENSG00000035928.101751.671202201.23930-0.329602.652101.77580HepG2GEMIN5
RFC1ENSG00000035928.102056.598802635.07710-0.357602.451101.49700HepG2GNB2L1
RFC1ENSG00000035928.102728.331403933.34090-0.527705.321804.45230HepG2GPKOW
RFC1ENSG00000035928.102146.859702821.42900-0.394207.119405.64290HepG2HDGF
RFC1ENSG00000035928.102556.802203509.59030-0.4570010.069508.49550HepG2HNRNPA2B1
RFC1ENSG00000035928.101791.765802896.76510-0.6931011.3764010.05070HepG2HNRNPC
RFC1ENSG00000035928.102616.230703478.64310-0.4110011.4182010.13270HepG2HNRNPL
RFC1ENSG00000035928.102909.168403753.66990-0.367703.301402.61980HepG2HNRNPLL
RFC1ENSG00000035928.102263.602302791.99850-0.302702.732901.78780HepG2HNRNPM
RFC1ENSG00000035928.102036.942502877.61090-0.4985012.0150010.82440HepG2HNRNPU
RFC1ENSG00000035928.102510.071903336.04110-0.410403.556802.80100HepG2IGF2BP2
RFC1ENSG00000035928.101964.732802939.37850-0.5812020.9004019.10310HepG2ILF2
RFC1ENSG00000035928.102428.875203355.22630-0.466103.260802.16110HepG2KHSRP
RFC1ENSG00000035928.102735.454305629.34060-1.0412012.2684010.53040HepG2LARP4
RFC1ENSG00000035928.101970.346902581.38570-0.389703.802002.46980HepG2LARP7
RFC1ENSG00000035928.102177.095002710.72980-0.316302.540001.38140HepG2LIN28B
RFC1ENSG00000035928.102378.251303538.60330-0.573306.285705.30560HepG2MAGOH
RFC1ENSG00000035928.102672.188203558.52980-0.413303.217502.54150HepG2MATR3
RFC1ENSG00000035928.101445.922102587.49840-0.839607.277405.66020HepG2METAP2
RFC1ENSG00000035928.101831.685103275.24820-0.8384017.6392015.81010HepG2MSI2
RFC1ENSG00000035928.102301.628603642.45170-0.662306.683505.71860HepG2NCBP2
RFC1ENSG00000035928.103097.055003786.72120-0.290103.546502.68410HepG2NOL12
RFC1ENSG00000035928.104067.082503328.427900.289102.342001.65140HepG2NSUN2
RFC1ENSG00000035928.101238.888601848.33820-0.577203.412101.63710HepG2PA2G4
RFC1ENSG00000035928.101895.058803244.29370-0.775709.500408.18020HepG2PABPC4
RFC1ENSG00000035928.102170.052502848.29960-0.392407.264205.99600HepG2PARN
RFC1ENSG00000035928.102167.204103301.21760-0.6072017.4728016.15850HepG2PCBP1
RFC1ENSG00000035928.101553.876302044.45410-0.395804.863603.25020HepG2PKM
RFC1ENSG00000035928.101991.899102566.59310-0.365705.290004.29990HepG2PPIL4
RFC1ENSG00000035928.103513.446402950.704500.251703.435302.58270HepG2PRPF4
RFC1ENSG00000035928.101332.963201890.20890-0.503904.204603.23270HepG2PRPF8
RFC1ENSG00000035928.102377.109503359.07430-0.4989012.3274011.33610HepG2PTBP1
RFC1ENSG00000035928.10997.733403614.75490-1.8572076.3800073.86550HepG2PUF60
RFC1ENSG00000035928.102413.355803837.21970-0.6690029.8093028.28320HepG2PUM1
RFC1ENSG00000035928.103038.842203834.41820-0.335504.303903.47780HepG2PUM2
RFC1ENSG00000035928.102022.232603010.00170-0.5738017.1480015.84890HepG2PUS1
RFC1ENSG00000035928.102224.754203638.04160-0.7095017.7708016.38220HepG2QKI
RFC1ENSG00000035928.102190.610603194.32350-0.544202.923002.20030HepG2RAVER1
RFC1ENSG00000035928.103370.892304283.13530-0.345502.444901.63360HepG2RBM15
RFC1ENSG00000035928.102085.344703879.46420-0.8956028.4294027.11620HepG2RBM22
RFC1ENSG00000035928.102672.794803301.72590-0.304903.168102.45160HepG2RBM25
RFC1ENSG00000035928.102318.331903112.69510-0.425103.850002.66600HepG2RBM27
RFC1ENSG00000035928.101000.157202405.48650-1.2661030.1118028.45060HepG2RPS19
RFC1ENSG00000035928.101693.006502870.79510-0.7619011.5406010.00250HepG2RPS2
RFC1ENSG00000035928.102257.979402930.38840-0.376103.085401.94830HepG2RPS5
RFC1ENSG00000035928.101296.164801869.85190-0.528704.130903.19250HepG2RRP9
RFC1ENSG00000035928.101828.550102562.61970-0.4869012.1256010.92450HepG2SAFB2
RFC1ENSG00000035928.101528.147102414.44700-0.659908.322406.72110HepG2SERBP1
RFC1ENSG00000035928.103513.275404389.83120-0.321301.922901.35820HepG2SF3A3
RFC1ENSG00000035928.102557.073203715.32670-0.539007.311506.21330HepG2SF3B1
RFC1ENSG00000035928.102607.791303497.29820-0.423409.358408.36950HepG2SF3B4
RFC1ENSG00000035928.102340.501402988.41390-0.352608.502707.47330HepG2SMN1
RFC1ENSG00000035928.101631.211403254.73540-0.9966012.025309.95430HepG2SMNDC1
RFC1ENSG00000035928.102256.179604133.97580-0.873608.353606.99860HepG2SNRNP70
RFC1ENSG00000035928.103664.751804381.75100-0.257804.541903.94560HepG2SRFBP1
RFC1ENSG00000035928.101750.001803650.39430-1.0607053.3697051.87470HepG2SRSF1
RFC1ENSG00000035928.102316.179403569.04120-0.6238018.7096017.28430HepG2SRSF5
RFC1ENSG00000035928.102663.286603144.10560-0.239403.122002.38880HepG2SRSF7
RFC1ENSG00000035928.102399.983502969.76620-0.307305.421304.69290HepG2SRSF9
RFC1ENSG00000035928.104259.140503804.465300.162802.081201.62020HepG2SSB
RFC1ENSG00000035928.101867.202902703.08070-0.533704.172602.67820HepG2STAU1
RFC1ENSG00000035928.102854.196704058.98550-0.5080016.4295015.11870HepG2SUCLG1
RFC1ENSG00000035928.101819.193402866.43660-0.656003.579702.05750HepG2SUGP2
RFC1ENSG00000035928.102049.433102732.63620-0.415103.807602.71650HepG2SUPT6H
RFC1ENSG00000035928.101465.011802438.78760-0.735307.901806.85360HepG2SUPV3L1
RFC1ENSG00000035928.101798.489903281.03940-0.8674027.4482025.91810HepG2TAF15
RFC1ENSG00000035928.102076.290503658.96430-0.8174014.9505013.48500HepG2TARDBP
RFC1ENSG00000035928.10950.984201634.71310-0.781508.595007.03340HepG2TFIP11
RFC1ENSG00000035928.102284.786403014.91030-0.400105.081103.95920HepG2TIA1
RFC1ENSG00000035928.101275.498202796.00910-1.1323035.5594034.13670HepG2TIAL1
RFC1ENSG00000035928.101431.921302821.14040-0.9783026.7215025.19280HepG2TRIM56
RFC1ENSG00000035928.102940.542203531.45880-0.264202.505301.67740HepG2TUFM
RFC1ENSG00000035928.102976.527003737.99110-0.328602.494501.70250HepG2UBE2L3
RFC1ENSG00000035928.10933.458501440.75580-0.626206.193505.04880HepG2UCHL5
RFC1ENSG00000035928.102649.515903893.11370-0.5552016.9691015.52820HepG2UPF1
RFC1ENSG00000035928.102965.754804001.54190-0.432208.546706.82040HepG2UTP18
RFC1ENSG00000035928.102268.427603758.64130-0.7285027.4665025.88270HepG2UTP3
RFC1ENSG00000035928.101915.966602400.71500-0.325401.999401.37500HepG2XRN2
RFC1ENSG00000035928.101933.570802912.00800-0.5907019.2477017.75870HepG2ZC3H8
RFC1ENSG00000035928.101767.070704281.67330-1.27680101.0445099.03900HepG2ZNF622
RFC1ENSG00000035928.103641.822204514.77670-0.310002.859702.19570K562AKAP8L
RFC1ENSG00000035928.103316.415104794.49590-0.531803.030301.91190K562CNOT7
RFC1ENSG00000035928.103502.049904362.74610-0.317005.078603.54670K562CPEB4
RFC1ENSG00000035928.102582.770103191.08920-0.305103.199602.35460K562CPSF6
RFC1ENSG00000035928.101735.097202182.89020-0.331203.228402.09640K562DDX3X
RFC1ENSG00000035928.103889.535204513.89650-0.214802.923602.25470K562DDX47
RFC1ENSG00000035928.101345.311201855.58030-0.463904.223903.07850K562EFTUD2
RFC1ENSG00000035928.101880.512302280.59960-0.278302.213201.47590K562EIF4A3
RFC1ENSG00000035928.102252.042902734.92540-0.280302.713501.46170K562EXOSC5
RFC1ENSG00000035928.102406.855603246.94070-0.431904.613303.50570K562FMR1
RFC1ENSG00000035928.101899.025902371.73070-0.320704.245003.51850K562FXR1
RFC1ENSG00000035928.103530.807702612.489900.434502.516701.84810K562G3BP2
RFC1ENSG00000035928.101792.164103046.67050-0.7655014.2250012.38990K562GPKOW
RFC1ENSG00000035928.102032.889903572.87120-0.8136017.6724015.70780K562GRSF1
RFC1ENSG00000035928.101636.146602136.35860-0.384903.662801.30350K562GRWD1
RFC1ENSG00000035928.101773.310302458.57990-0.471404.083803.37450K562HNRNPC
RFC1ENSG00000035928.103048.381004079.46380-0.420305.433603.89580K562HNRNPL
RFC1ENSG00000035928.101920.370802601.56680-0.438002.941201.97470K562KRR1
RFC1ENSG00000035928.102514.257403271.29730-0.379704.304803.25350K562MAGOH
RFC1ENSG00000035928.101742.463602973.90490-0.7712014.9188012.81590K562METAP2
RFC1ENSG00000035928.102417.312003132.17040-0.373807.618606.33500K562MTPAP
RFC1ENSG00000035928.102832.349503480.04840-0.297107.240206.11390K562NSUN2
RFC1ENSG00000035928.102595.018203589.21910-0.467905.324804.12620K562PPIG
RFC1ENSG00000035928.101560.155802204.28250-0.498603.686102.62250K562PSIP1
RFC1ENSG00000035928.102384.097303178.22630-0.414805.425104.52270K562PTBP1
RFC1ENSG00000035928.103118.537505506.98040-0.8204016.9246014.85160K562PUF60
RFC1ENSG00000035928.104839.667005739.21230-0.245903.473402.39820K562PUM2
RFC1ENSG00000035928.102087.959903047.86040-0.545707.155805.72580K562RBM22
RFC1ENSG00000035928.101393.788801839.37400-0.400202.680101.87890K562RPS19
RFC1ENSG00000035928.102190.973403434.03000-0.6483016.6076014.74220K562SF3A3
RFC1ENSG00000035928.102215.924002897.61700-0.387003.012401.99650K562SF3B1
RFC1ENSG00000035928.101906.584702716.84140-0.510908.187406.67420K562SF3B4
RFC1ENSG00000035928.101049.687603115.65550-1.5696058.8995055.93600K562SRSF1
RFC1ENSG00000035928.102122.371502774.19500-0.386404.486603.09110K562SRSF4
RFC1ENSG00000035928.101138.129701748.43260-0.619406.063404.51500K562SUPV3L1
RFC1ENSG00000035928.101912.854103153.38870-0.7212010.802609.24720K562TARDBP
RFC1ENSG00000035928.102525.746303041.76210-0.268202.606001.81400K562TIA1
RFC1ENSG00000035928.101529.830902120.20490-0.470803.757502.66380K562TIAL1
RFC1ENSG00000035928.101675.548602251.94910-0.426503.914702.74890K562TRIM56
RFC1ENSG00000035928.101969.700503689.97490-0.9056040.2195037.88740K562UPF1
RFC1ENSG00000035928.103836.402103283.380400.224503.609802.65180K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RFC1 is not available on ENCORE database.





13 RBPs can affect the splicing of RFC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERFC1ENSG00000035928.10chr4-3934310639343285393291433932937639343964393440870.056000.001060.02198includedK562SRSF1
SERFC1ENSG00000035928.10chr4-393046793930477139304356393044943930643339306548-0.228000.000000.00000excludedK562SRSF1
SERFC1ENSG00000035928.10chr4-393046793930477139304356393044943930643339306548-0.057000.001840.03440excludedK562SF3B4
SERFC1ENSG00000035928.10chr4-393281823932826039324959393250373932914339329376-0.104000.003530.05664excludedK562SF3B4
SERFC1ENSG00000035928.10chr4-393249593932503739322906393229943932818239328260-0.098000.001140.02298excludedHepG2U2AF1
SERFC1ENSG00000035928.10chr4-393281823932826039322084393222893932914339329376-0.153000.003960.08798excludedK562AKAP8L
SERFC1ENSG00000035928.10chr4-393249593932503739322906393229943932818239328260-0.158000.000000.00000excludedHepG2U2AF2
SERFC1ENSG00000035928.10chr4-3930643339306570393043563930449439313064393131690.173000.006620.05852includedK562AQR
SERFC1ENSG00000035928.10chr4-3934310639343285393291433932937639343964393440810.051000.000090.00155includedK562AQR
SERFC1ENSG00000035928.10chr4-393046793930477139304356393044943930643339306548-0.272000.000000.00000excludedK562AQR
SERFC1ENSG00000035928.10chr4-393102553931065239306433393065703931306439313212-0.111000.000010.00016excludedK562AQR
SERFC1ENSG00000035928.10chr4-393281823932826039324959393250373932914339329376-0.090000.000080.00134excludedK562AQR
SERFC1ENSG00000035928.10chr4-393229063932299439322002393222893932818239328260-0.056000.000860.01506excludedK562PUS1
SERFC1ENSG00000035928.10chr4-393229063932299439322002393222893932914339329376-0.107000.000450.01187excludedK562U2AF1
SERFC1ENSG00000035928.10chr4-393102553931065239306433393065483931306439313169-0.093000.000570.04284excludedK562HNRNPL
SERFC1ENSG00000035928.10chr4-393046793930477139304356393044943930643339306548-0.187000.000000.00000excludedHepG2SRSF1
SERFC1ENSG00000035928.10chr4-393046793930477139304356393044943930643339306548-0.096000.000010.00077excludedHepG2SF3A3
SERFC1ENSG00000035928.10chr4-393102553931065239306433393065483931306439313169-0.120000.000000.00001excludedHepG2SF3A3
SERFC1ENSG00000035928.10chr4-393082113930832439306433393065483931025539310652-0.053000.001890.05474excludedK562UTP18
SERFC1ENSG00000035928.10chr4-393229063932299439322002393222893932914339329376-0.138000.000000.00035excludedK562UTP18
SERFC1ENSG00000035928.10chr4-393249593932503739322906393229943932818239328260-0.117000.000270.00669excludedK562U2AF2
SERFC1ENSG00000035928.10chr4-393082113930832139306433393065483931306439313169-0.338000.000000.00034excludedK562TARDBP
SERFC1ENSG00000035928.10chr4-393229063932299439322002393222893932914339329376-0.135000.000020.00100excludedK562RBM15
SERFC1ENSG00000035928.10chr4-3935749639357617393529673935309639367858393679820.256000.000000.00000includedHepG2HNRNPC
SERFC1ENSG00000035928.10chr4-393249593932503739322906393229943932818239328260-0.067000.000770.03126excludedHepG2HNRNPC
SERFC1ENSG00000035928.10chr4-3930899539309091393082533930832439310255393106520.110000.005860.07864includedK562HNRNPC
SERFC1ENSG00000035928.10chr4-3935749639357617393529673935309639367858393679820.142000.002570.04150includedK562HNRNPC
SERFC1ENSG00000035928.10chr4-393102553931065239306433393065483931306439313169-0.115000.001710.02987excludedK562HNRNPC
SERFC1ENSG00000035928.10chr4-393249593932503739322906393229943932818239328260-0.080000.000470.01017excludedK562HNRNPC
A3SSRFC1ENSG00000035928.10chr4-3930164039301811393016403930175839301879393020340.088000.000000.00000longerK562AQR
A3SSRFC1ENSG00000035928.10chr4-3930643339306570393064333930654839313064393132270.766000.000000.00000longerK562AQR
A3SSRFC1ENSG00000035928.10chr4-3931438339314622393143833931455139318534393186420.074000.000000.00000longerK562AQR
A3SSRFC1ENSG00000035928.10chr4-3930187939302099393018793930203439303897393039960.090000.000000.00000longerK562AQR
A3SSRFC1ENSG00000035928.10chr4-3934396439344127393439643934408739347020393470960.078000.000000.00000longerK562AQR
MXERFC1ENSG00000035928.10chr4-39304679393047713930643339306570393043563930449439308211393083210.367000.000000.000001includedK562AQR
MXERFC1ENSG00000035928.10chr4-3930643339306548393143713931455139304356393044943931853439318642-0.193000.000000.000002includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RFC1 is not avaliable on ENCORE database.