RTFDC1

General Information

Gene Name       : RTFDC1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RTFDC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RTFDC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RTFDC1 RNA is bound by 20 proteins.  







eCLIP assay for RTFDC1 is not avaliable on ENCORE database.





20 proteins are bound to RTFDC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr205509382655093902+3'-UTR,intron-Distal4.7955216.83921K562PABPC4
chr205509383055093866+3'-UTR,intron-Distal5.264997.22380HepG2SUB1
chr205509366855093715+3'-UTR,intron-Distal3.706343.66308K562UPF1
chr205509384755093898+3'-UTR,intron-Distal3.463275.35486K562UPF1
chr205509384155093888+3'-UTR,intron-Distal3.865623.54620HepG2LIN28B
chr205509336355093408+3'-UTR,intron-Proximal4.401216.03393K562YBX3
chr205509347155093527+3'-UTR,intron-Distal4.4172515.27671HepG2SUB1
chr205509337355093521+3'-UTR,intron-Distal,intron-Proximal3.731078.82223K562NOLC1
chr205509367555093725+3'-UTR,intron-Distal5.2547617.53659K562PABPC4
chr205509339155093540+3'-UTR,intron-Distal,intron-Proximal5.021427.21030HepG2UPF1
chr205509373655093820+3'-UTR,intron-Distal3.165894.63930HepG2PABPN1
chr205509363155093646+3'-UTR,intron-Distal3.8106913.60526K562YBX3
chr205509361455093631+3'-UTR,intron-Distal3.7863414.00943K562YBX3
chr205509360155093614+3'-UTR,intron-Distal3.400098.86025K562YBX3
chr205509334855093413+3'-UTR,intron-Proximal4.8794712.61077K562PABPC4
chr205509337055093414+3'-UTR,intron-Proximal3.204845.53410HepG2SUB1
chr205509352855093598+3'-UTR,intron-Distal3.596579.09662K562YBX3
chr205509383955093885+3'-UTR,intron-Distal5.672679.64995K562LIN28B
chr205509383755093874+3'-UTR,intron-Distal4.276855.13745K562YBX3
chr205509334855093416+3'-UTR,intron-Proximal3.407134.32261K562IGF2BP2
chr205509374755093839+3'-UTR,intron-Distal5.0725714.08080K562LIN28B
chr205509341455093471+3'-UTR,intron-Distal,intron-Proximal5.0109925.79661HepG2SUB1
chr205504373355043784+5'-UTR,CDS3.675817.52358K562UCHL5
chr205504374655043823+5'-UTR,CDS,intron-Proximal3.341695.74131HepG2PPIG
chr205504372155043824+5'-UTR,CDS,intron-Proximal4.5887229.54203K562DDX3X
chr205504374355043809+5'-UTR,CDS3.1920311.78532K562ZNF622
chr205509199155092001+CDS,intron-Distal4.395834.44454K562UCHL5
chr205508840955088483+CDS3.146808.17760K562UCHL5
chr205505204055052179+CDS,intron-Proximal3.225114.89240HepG2PABPN1
chr205504844055048451+CDS3.299283.69775K562YBX3
chr205505213355052181+CDS,intron-Proximal4.1829016.28434K562YBX3
chr205505916655059211+CDS,intron-Proximal3.799289.13328K562YBX3
chr205505206455052179+CDS3.149056.89364HepG2PPIG
chr205509199355092038+CDS,intron-Distal3.905713.03355K562METAP2
chr205504976155049798+CDS3.705055.10442K562YBX3
chr205504835555048409+CDS,intron-Proximal3.973916.81445K562GRWD1
chr205504380955043823+CDS,intron-Proximal3.226117.28455K562ZNF622
chr205509202955092044+CDS,intron-Distal3.613883.69481K562UCHL5
chr205509216155092190+CDS,intron-Proximal4.503065.35719HepG2GRWD1
chr205504975555049823+CDS3.000874.99766HepG2GRWD1
chr205508839755088479+CDS3.405848.51590HepG2GRWD1
chr205504982055049870+CDS,intron-Proximal4.755574.68690HepG2PRPF8
chr205504973355049749+CDS,intron-Proximal3.113903.17233HepG2BCLAF1
chr205504973355049740+CDS,intron-Proximal3.269223.69775K562YBX3
chr205504379455043823+CDS,intron-Proximal3.156344.34695HepG2BCLAF1
chr205509216055092253+CDS,intron-Proximal3.246759.60326HepG2BCLAF1
chr205505923055059289+CDS,intron-Proximal4.823765.01842HepG2PRPF8
chr205504839655048452+CDS,intron-Proximal3.327038.77086HepG2BCLAF1
chr205504835655048424+CDS,intron-Proximal3.185379.46208K562DDX3X
chr205504378455043803+CDS3.218326.28688K562UCHL5
chr205509217555092231+CDS3.843684.47485K562DDX55
chr205509212055092283+CDS,intron-Proximal3.586178.10268HepG2AQR
chr205504835555048449+CDS,intron-Proximal3.2779712.26819K562UCHL5
chr205509200155092029+CDS,intron-Distal3.850855.03335K562UCHL5
chr205509217755092248+CDS3.512213.55142K562METAP2
chr205508837055088480+CDS,intron-Proximal3.473295.23342HepG2G3BP1
chr205504835655048405+CDS,intron-Proximal3.7192111.29508K562ZNF622
chr205509216755092238+CDS3.041147.36535K562ZNF622
chr205509078855090897+intron-Distal4.651455.14742HepG2HNRNPL
chr205509076755090888+intron-Distal4.111524.02823K562HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RTFDC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RTFDC1 is not available on ENCORE database.

  • 65 RBPs can affect the levels of RTFDC1.  








The Knockdown/knockout RNA-Seq assay for RTFDC1 is not available on ENCORE database.





65 RBPs can affect the gene expression of RTFDC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RTFDC1ENSG00000022277.82292.955601678.905400.449609.707308.70900HepG2ACO1
RTFDC1ENSG00000022277.84686.484703143.260200.576105.692504.96190HepG2AKAP1
RTFDC1ENSG00000022277.81954.655701686.697700.212602.227701.53180HepG2AKAP8L
RTFDC1ENSG00000022277.81952.666502600.75090-0.413503.535902.64990HepG2ASCC1
RTFDC1ENSG00000022277.83367.310702656.619600.341905.977805.03090HepG2AUH
RTFDC1ENSG00000022277.82034.619201490.029700.449304.692503.93840HepG2BOP1
RTFDC1ENSG00000022277.82147.495001678.425500.355406.773805.81690HepG2CKAP4
RTFDC1ENSG00000022277.82258.410201558.030800.535503.139602.32140HepG2CNOT7
RTFDC1ENSG00000022277.81615.171602395.79260-0.5688011.8839010.72980HepG2CELF1
RTFDC1ENSG00000022277.81352.091601552.69410-0.199602.156701.41330HepG2DDX19B
RTFDC1ENSG00000022277.81782.512301414.952800.333102.382401.52400HepG2EEF2
RTFDC1ENSG00000022277.81492.412001179.495200.339402.418701.38450HepG2EFTUD2
RTFDC1ENSG00000022277.81941.709902486.41680-0.356702.753402.16160HepG2EIF2S1
RTFDC1ENSG00000022277.81388.619502675.42720-0.9461010.457909.16610HepG2EIF4B
RTFDC1ENSG00000022277.81952.497902434.51830-0.318302.567901.78150HepG2EIF4G2
RTFDC1ENSG00000022277.81464.816703050.09820-1.0581043.9915042.14430HepG2ETF1
RTFDC1ENSG00000022277.82309.351901797.781200.361202.466301.73640HepG2FIP1L1
RTFDC1ENSG00000022277.82256.731702772.55940-0.297002.053301.45350HepG2FXR1
RTFDC1ENSG00000022277.8380.783401550.61100-2.0258046.1039043.90840HepG2GPKOW
RTFDC1ENSG00000022277.81797.602902083.49640-0.212902.070201.44380HepG2HNRNPF
RTFDC1ENSG00000022277.82127.174402604.50660-0.292102.270101.63350HepG2HNRNPK
RTFDC1ENSG00000022277.81974.028902629.48450-0.413602.614501.64270HepG2KHSRP
RTFDC1ENSG00000022277.8979.237101509.24820-0.624104.156102.95510HepG2MTPAP
RTFDC1ENSG00000022277.8963.722501312.12920-0.445203.756702.88680HepG2NSUN2
RTFDC1ENSG00000022277.81861.391302542.12850-0.449703.936403.08580HepG2PABPC4
RTFDC1ENSG00000022277.82039.721502450.00030-0.264403.525102.85790HepG2PCBP1
RTFDC1ENSG00000022277.82018.553001417.613400.509804.775403.74660HepG2PRPF8
RTFDC1ENSG00000022277.81940.824801710.057300.182501.982001.44150HepG2PUS1
RTFDC1ENSG00000022277.82516.580301503.774000.742804.940004.01250HepG2RAVER1
RTFDC1ENSG00000022277.83300.318702549.329500.372403.786503.20520HepG2RBM22
RTFDC1ENSG00000022277.81824.380502450.36880-0.425605.130804.23860HepG2RBM25
RTFDC1ENSG00000022277.81243.226201881.39740-0.597706.796405.23560HepG2RBM27
RTFDC1ENSG00000022277.82021.124902774.44190-0.457009.187408.30460HepG2NELFE
RTFDC1ENSG00000022277.81941.756402584.06360-0.412307.718006.76520HepG2RECQL
RTFDC1ENSG00000022277.82979.977001706.483500.804206.044305.02450HepG2SF3A3
RTFDC1ENSG00000022277.82186.714402595.47640-0.247203.148002.52250HepG2SF3B4
RTFDC1ENSG00000022277.81973.891202338.06940-0.244303.525102.74880HepG2SLBP
RTFDC1ENSG00000022277.84135.932102879.394700.5223016.5290015.57440HepG2SRFBP1
RTFDC1ENSG00000022277.83254.599202709.138800.264504.137603.58800HepG2SRSF1
RTFDC1ENSG00000022277.81730.168502204.04880-0.349205.892005.14130HepG2SRSF9
RTFDC1ENSG00000022277.81967.610302435.14440-0.307603.818603.17790HepG2TAF15
RTFDC1ENSG00000022277.81915.289001498.452300.354003.970803.39460HepG2TIAL1
RTFDC1ENSG00000022277.81748.638301513.387200.208402.217901.58170HepG2UPF1
RTFDC1ENSG00000022277.82031.439301461.120100.475309.378708.38220HepG2UTP3
RTFDC1ENSG00000022277.82280.487901664.440100.4542011.3975010.47390HepG2ZNF622
RTFDC1ENSG00000022277.82656.874101720.335600.6269016.9000015.62020K562AGGF1
RTFDC1ENSG00000022277.82528.621301890.402400.419604.614903.27020K562AKAP8
RTFDC1ENSG00000022277.82744.343501790.090500.616309.210407.93710K562AKAP8L
RTFDC1ENSG00000022277.84766.820902724.780300.8068015.5597014.32250K562AQR
RTFDC1ENSG00000022277.82669.812901878.242200.507309.420307.60740K562ATP5C1
RTFDC1ENSG00000022277.82525.118702176.304400.214402.530101.90310K562DDX47
RTFDC1ENSG00000022277.82561.006201926.244500.410806.794205.32190K562DKC1
RTFDC1ENSG00000022277.81980.018201459.744500.439704.536603.43060K562FIP1L1
RTFDC1ENSG00000022277.8974.911801308.97840-0.425102.542001.86920K562G3BP2
RTFDC1ENSG00000022277.8772.615901169.81760-0.598506.670905.44180K562GPKOW
RTFDC1ENSG00000022277.81738.741301200.721100.534004.804803.54280K562HNRNPM
RTFDC1ENSG00000022277.82529.288701979.018900.353803.162402.31480K562HSPD1
RTFDC1ENSG00000022277.82627.806001899.721600.468006.050004.72470K562KIF1C
RTFDC1ENSG00000022277.82293.908301818.510600.335003.147301.98070K562MAK16
RTFDC1ENSG00000022277.82213.707801491.693900.569404.570903.34760K562NAA15
RTFDC1ENSG00000022277.82373.115601591.934200.575902.499801.57170K562PABPN1
RTFDC1ENSG00000022277.82144.359201657.185800.371703.322002.40850K562PPIG
RTFDC1ENSG00000022277.82347.398001328.636700.8210012.8160011.19090K562PRPF8
RTFDC1ENSG00000022277.81023.907901380.35530-0.431003.743302.66920K562PSIP1
RTFDC1ENSG00000022277.82983.571103575.41530-0.261102.890501.91050K562PUM2
RTFDC1ENSG00000022277.83266.343501775.254700.8796016.4390015.15490K562PUS1
RTFDC1ENSG00000022277.82662.740901729.738100.6223013.1037011.80900K562RBM15
RTFDC1ENSG00000022277.81953.264001353.312600.529304.741103.66950K562RPS19
RTFDC1ENSG00000022277.81736.157401360.871300.351303.735002.73670K562SF3B4
RTFDC1ENSG00000022277.82312.371201816.217300.348303.625302.82280K562SRSF1
RTFDC1ENSG00000022277.8870.770501155.10770-0.407703.568602.35090K562SRSF4
RTFDC1ENSG00000022277.8880.562401364.20050-0.631607.669804.98460K562TBRG4
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RTFDC1 is not available on ENCORE database.





21 RBPs can affect the splicing of RTFDC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERTFDC1ENSG00000022277.8chr20+550919905509204555088370550884845509216155092257-0.097000.000000.00000excludedHepG2U2AF1
SERTFDC1ENSG00000022277.8chr20+5504738155047471550436975504382255048356550484160.080000.000010.00031includedHepG2U2AF2
SERTFDC1ENSG00000022277.8chr20+550919905509204555088370550884845509216155092257-0.140000.000000.00000excludedHepG2U2AF2
SERTFDC1ENSG00000022277.8chr20+550466695504672555043734550438225504738155047471-0.402000.000040.00086excludedHepG2U2AF2
SERTFDC1ENSG00000022277.8chr20+550919905509204555088370550884845509216155092309-0.132000.000000.00000excludedK562AQR
SERTFDC1ENSG00000022277.8chr20+5504738155047471550436975504382255048356550484160.052000.000000.00000includedK562U2AF1
SERTFDC1ENSG00000022277.8chr20+5504666955046725550437345504382255047381550474710.461000.000560.06399includedHepG2PCBP2
SERTFDC1ENSG00000022277.8chr20+5504666955046725550437345504382255047381550474710.305000.002480.06178includedHepG2SF3A3
SERTFDC1ENSG00000022277.8chr20+550473815504747155043697550438225504835655048451-0.086000.000020.01107excludedK562FXR2
SERTFDC1ENSG00000022277.8chr20+550919905509204555088370550884845509216155092257-0.064000.000000.00008excludedK562U2AF2
SERTFDC1ENSG00000022277.8chr20+550466695504672555043734550438225504738155047471-0.474000.004170.06258excludedK562U2AF2
SERTFDC1ENSG00000022277.8chr20+5504666955046725550437345504382255047381550474710.487000.000330.04065includedK562CPSF6
SERTFDC1ENSG00000022277.8chr20+5504666955046725550437345504382255047381550474710.435000.000650.02874includedK562SF3B1
A3SSRTFDC1ENSG00000022277.8chr20+550919905509225755092161550922575508842455088484-0.080000.000050.00679shorterHepG2SF3A3
A3SSRTFDC1ENSG00000022277.8chr20+550919905509204555091999550920455508842455088484-0.070000.000000.00000shorterK562SF3B4
A3SSRTFDC1ENSG00000022277.8chr20+550919905509225755092161550922575508842155088484-0.240000.000000.00000shorterK562AQR
A3SSRTFDC1ENSG00000022277.8chr20+550919905509225755092161550922575508842155088484-0.159000.000000.00000shorterHepG2U2AF1
A3SSRTFDC1ENSG00000022277.8chr20+550919905509225755092161550922575508842455088484-0.098000.000050.00390shorterK562U2AF1
RIRTFDC1ENSG00000022277.8chr20+5509199055092257550919905509204555092161550922570.060000.009380.05742includedHepG2U2AF2
MXERTFDC1ENSG00000022277.8chr20+55088388550884845509199055092045550591665505924555092161550922570.150000.000000.000011includedHepG2U2AF1
MXERTFDC1ENSG00000022277.8chr20+55059166550592455508837055088484550520405505218055091990550920450.147000.000210.009871includedK562UCHL5
MXERTFDC1ENSG00000022277.8chr20+55059166550592455508842455088484550520405505218055091990550920450.137000.002430.060791includedK562UCHL5
MXERTFDC1ENSG00000022277.8chr20+5508837055088484550919905509204555059166550592455509216155092257-0.141000.002790.037082includedK562DROSHA
MXERTFDC1ENSG00000022277.8chr20+5505916655059245550884245508848455052040550521805509216155092257-0.170000.000970.019332includedK562U2AF1
MXERTFDC1ENSG00000022277.8chr20+55088370550884845509199055092045550520405505218055092161550922570.156000.000000.000001includedK562AQR
MXERTFDC1ENSG00000022277.8chr20+55059166550592455508837055088484550520405505218055091990550920450.079000.006980.047351includedK562AQR
MXERTFDC1ENSG00000022277.8chr20+55059166550592455508842155088484550520405505218055091990550920450.092000.003010.023491includedK562AQR
MXERTFDC1ENSG00000022277.8chr20+55059166550592455508842455088484550520405505218055091990550920450.093000.002340.019021includedK562AQR
MXERTFDC1ENSG00000022277.8chr20+55088421550884845509199055092045550520405505218055092161550922570.130000.000000.000001includedK562AQR
MXERTFDC1ENSG00000022277.8chr20+55088424550884845509199055092045550520405505218055092161550922570.128000.000000.000001includedK562AQR
MXERTFDC1ENSG00000022277.8chr20+5505916655059245550883705508848455052040550521805509216155092257-0.143000.000000.000002includedK562AQR
MXERTFDC1ENSG00000022277.8chr20+5505916655059245550884215508848455052040550521805509216155092257-0.118000.000000.000002includedK562AQR
MXERTFDC1ENSG00000022277.8chr20+5505916655059245550884245508848455052040550521805509216155092257-0.116000.000000.000002includedK562AQR
MXERTFDC1ENSG00000022277.8chr20+5509199055092045550921615509225755088370550884845509314255093943-0.127000.000010.000122includedK562AQR
MXERTFDC1ENSG00000022277.8chr20+5509199055092045550921615509230955088370550884845509314255093730-0.118000.000000.000002includedK562AQR
MXERTFDC1ENSG00000022277.8chr20+5509196355092045550921615509230955088370550884845509314255093730-0.052000.003480.026502includedK562AQR
MXERTFDC1ENSG00000022277.8chr20+55052040550521805505916655059245550497335504982755088370550884840.105000.002430.032391includedK562U2AF2
MXERTFDC1ENSG00000022277.8chr20+5505916655059245550883705508848455052040550521805509216155092257-0.231000.000000.000002includedK562U2AF2
MXERTFDC1ENSG00000022277.8chr20+55088370550884845509199055092045550591665505924555092161550922570.098000.004720.084041includedK562TARDBP
MXERTFDC1ENSG00000022277.8chr20+55059166550592455508842455088484550520405505218055091990550920450.086000.009610.076991includedHepG2SFPQ
MXERTFDC1ENSG00000022277.8chr20+5508837055088484550919905509204555059166550592455509216155092257-0.066000.004320.043392includedHepG2SFPQ
MXERTFDC1ENSG00000022277.8chr20+55059166550592455508842455088484550520405505218055091990550920450.100000.004600.088271includedHepG2XRN2
MXERTFDC1ENSG00000022277.8chr20+55059166550592455508842455088484550520405505218055091990550920450.130000.000700.047891includedK562TRA2A
MXERTFDC1ENSG00000022277.8chr20+5508837055088484550919905509204555059166550592455509216155092257-0.093000.000080.002602includedHepG2HNRNPUL1
MXERTFDC1ENSG00000022277.8chr20+5508837055088484550919905509204555059166550592455509216155092257-0.080000.005630.093922includedK562SBDS
MXERTFDC1ENSG00000022277.8chr20+55059166550592455508842455088484550520405505218055091990550920450.131000.000560.043851includedK562RBM22
MXERTFDC1ENSG00000022277.8chr20+55059166550592455508842455088484550520405505218055091990550920450.098000.007070.090931includedK562HNRNPC
MXERTFDC1ENSG00000022277.8chr20+5509199055092045550921615509225755088370550884845509314255093943-0.120000.000540.012502includedK562HNRNPC
MXERTFDC1ENSG00000022277.8chr20+55059166550592455508842455088484550520405505218055091990550920450.172000.000010.004341includedK562EIF3G
MXERTFDC1ENSG00000022277.8chr20+55059166550592455508837055088484550520405505218055091990550920450.139000.000030.001031includedK562SF3B4
MXERTFDC1ENSG00000022277.8chr20+55059166550592455508842455088484550520405505218055091990550920450.159000.000010.000541includedK562SF3B4
MXERTFDC1ENSG00000022277.8chr20+55059166550592455508842155088484550520405505218055091990550920450.124000.001510.032131includedK562PRPF8
MXERTFDC1ENSG00000022277.8chr20+55059166550592455508842455088484550520405505218055091990550920450.130000.001130.025611includedK562PRPF8
MXERTFDC1ENSG00000022277.8chr20+55059166550592455508842455088484550520405505218055091990550920450.093000.003810.053801includedK562HNRNPUL1
MXERTFDC1ENSG00000022277.8chr20+5509199055092045550921615509225755088370550884845509314255093943-0.089000.007560.080612includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RTFDC1 is not avaliable on ENCORE database.