NHLRC3

General Information

Gene Name       : NHLRC3
Gene ID             : ENSG00000188811.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NHLRC3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NHLRC3ENSG00000188811.1319.5115.1617.34ENCSR000AEF
HepG2NHLRC3ENSG00000188811.1311.0717.7514.41ENCSR985KAT
K562NHLRC3ENSG00000188811.135.865.905.88ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NHLRC3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NHLRC3 RNA is bound by 9 proteins.  







eCLIP assay for NHLRC3 is not avaliable on ENCORE database.





9 proteins are bound to NHLRC3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr133962404339624162+3'-UTR3.205344.27074HepG2FUBP3
chr133962415939624215+3'-UTR3.914183.09432HepG2ZC3H11A
chr133962403439624110+3'-UTR3.427824.54121HepG2KHSRP
chr133961373439613788+5'-UTR,CDS3.580344.34695HepG2BCLAF1
chr133961615739616293+5'-UTR,CDS,intron-Distal,intron-Proximal3.6040710.37441K562KHSRP
chr133961378839613859+5'-UTR,CDS,intron-Proximal3.597845.40132HepG2BCLAF1
chr133961636439616456+5'-UTR,CDS,intron-Distal,intron-Proximal4.8760310.64218HepG2BCLAF1
chr133961823639618294+CDS4.516614.20763HepG2U2AF2
chr133962116339621205+CDS,intron-Proximal4.029183.20724K562SMNDC1
chr133962181039621849+CDS,intron-Proximal3.498594.74886HepG2BCLAF1
chr133962116239621216+CDS,intron-Proximal3.503844.95320HepG2U2AF2
chr133962125739621293+CDS,intron-Proximal4.398694.38106HepG2PPIG
chr133962180739621850+CDS,intron-Proximal4.347413.79199HepG2PPIG
chr133962123639621292+CDS,intron-Proximal4.259114.93978HepG2BCLAF1
chr133961600139616088+intron-Distal4.197408.34041K562KHSRP
chr133961596139616001+intron-Distal3.276053.68839K562KHSRP
chr133961556039615675+intron-Distal3.668578.24998K562KHSRP
chr133961649639616567+intron-Distal,intron-Proximal5.301439.82431K562KHSRP
chr133961650239616572+intron-Distal,intron-Proximal4.9066115.27431HepG2KHSRP
chr133961838339618528+intron-Distal,intron-Proximal5.158829.16624K562TARDBP
chr133961391939613983+intron-Distal,intron-Proximal3.723785.30252HepG2KHSRP
chr133961558539615628+intron-Distal4.680006.41805HepG2KHSRP
chr133961577239615848+intron-Distal4.958525.60990HepG2KHSRP
chr133961807039618121+intron-Distal3.296313.81210HepG2KHSRP
chr133961886139618949+intron-Distal3.349555.93274HepG2PTBP1
chr133961392039613949+intron-Distal,intron-Proximal4.039996.83037K562KHSRP
chr133962111539621162+intron-Proximal4.936386.83215HepG2U2AF2
chr133961387239613920+intron-Proximal4.001426.19377K562KHSRP
chr133961387639613919+intron-Proximal4.643145.64557HepG2KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NHLRC3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NHLRC3 is not available on ENCORE database.

  • 95 RBPs can affect the levels of NHLRC3.  








The Knockdown/knockout RNA-Seq assay for NHLRC3 is not available on ENCORE database.





95 RBPs can affect the gene expression of NHLRC3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NHLRC3ENSG00000188811.8575.23260835.79060-0.539004.783703.40820HepG2AATF
NHLRC3ENSG00000188811.8651.616401169.06550-0.843308.301207.36300HepG2ACO1
NHLRC3ENSG00000188811.81056.129501480.83370-0.487603.015502.46300HepG2AKAP1
NHLRC3ENSG00000188811.81207.35130985.948800.292202.157801.47120HepG2CALR
NHLRC3ENSG00000188811.81545.657901164.111800.408903.280302.44240HepG2CIRBP
NHLRC3ENSG00000188811.8723.945401169.05600-0.691406.198705.27510HepG2CKAP4
NHLRC3ENSG00000188811.81162.96600764.597600.604906.046505.06480HepG2CPSF6
NHLRC3ENSG00000188811.8691.10830892.98920-0.369702.507301.45650HepG2CPSF7
NHLRC3ENSG00000188811.8733.440501081.33050-0.560104.763403.70810HepG2DDX19B
NHLRC3ENSG00000188811.82134.084101418.612700.589006.094705.20090HepG2DDX3X
NHLRC3ENSG00000188811.8362.52740904.02600-1.318308.437507.16760HepG2DDX55
NHLRC3ENSG00000188811.81383.08980888.163800.638905.486504.10900HepG2DDX5
NHLRC3ENSG00000188811.8748.995901218.41520-0.702006.349305.44270HepG2DDX6
NHLRC3ENSG00000188811.81124.00760743.676000.595806.656105.18750HepG2DHX30
NHLRC3ENSG00000188811.8482.20230764.23550-0.6644010.700509.51620HepG2DNAJC2
NHLRC3ENSG00000188811.8461.07900875.53430-0.9251010.357008.71910HepG2EEF2
NHLRC3ENSG00000188811.8559.88420849.11230-0.600804.146102.77640HepG2AGO1
NHLRC3ENSG00000188811.8433.51540710.76850-0.713306.401105.06890HepG2EIF3D
NHLRC3ENSG00000188811.8902.295401260.42040-0.482202.801102.10820HepG2EIF4B
NHLRC3ENSG00000188811.81049.517801386.35690-0.401604.950503.88370HepG2EIF4G1
NHLRC3ENSG00000188811.82139.600901328.083800.687909.008507.57570HepG2EIF4G2
NHLRC3ENSG00000188811.81797.785201534.882000.228002.602102.01550HepG2ETF1
NHLRC3ENSG00000188811.8672.005701142.60290-0.765807.305605.95190HepG2EWSR1
NHLRC3ENSG00000188811.81209.28530670.205500.851409.127707.74150HepG2FUBP3
NHLRC3ENSG00000188811.8940.778101306.03890-0.473303.816703.01450HepG2FXR1
NHLRC3ENSG00000188811.81777.229201286.169900.466404.185603.08030HepG2G3BP2
NHLRC3ENSG00000188811.8322.47000632.85630-0.9727010.657408.97560HepG2GEMIN5
NHLRC3ENSG00000188811.81397.40930866.716300.689006.823005.84510HepG2GPKOW
NHLRC3ENSG00000188811.8960.204701291.54530-0.427706.081804.78840HepG2HNRNPA2B1
NHLRC3ENSG00000188811.8536.18780776.18820-0.533703.161401.54040HepG2HNRNPD
NHLRC3ENSG00000188811.81057.620101280.36990-0.275702.505301.86100HepG2HNRNPL
NHLRC3ENSG00000188811.81528.16920827.124600.8855012.4879011.27680HepG2HNRNPLL
NHLRC3ENSG00000188811.8498.75100755.45260-0.599005.807904.49130HepG2HNRNPM
NHLRC3ENSG00000188811.8476.15650860.14080-0.8531016.1802014.80860HepG2HNRNPU
NHLRC3ENSG00000188811.8572.227201304.89640-1.189304.186103.15800HepG2LARP4
NHLRC3ENSG00000188811.8597.963101007.08300-0.752105.996104.34350HepG2LARP7
NHLRC3ENSG00000188811.8931.784401313.85370-0.495703.605602.89340HepG2MATR3
NHLRC3ENSG00000188811.8473.13250743.90440-0.652902.965101.87340HepG2METAP2
NHLRC3ENSG00000188811.81488.79190843.591700.819406.387204.88270HepG2MTPAP
NHLRC3ENSG00000188811.8959.67820744.113100.366902.890001.64850HepG2NAA15
NHLRC3ENSG00000188811.81276.50080733.414800.7994010.302608.93410HepG2NSUN2
NHLRC3ENSG00000188811.8396.06830851.39470-1.1041023.4373021.44290HepG2PARN
NHLRC3ENSG00000188811.8968.878001154.87930-0.253401.998101.46920HepG2PCBP1
NHLRC3ENSG00000188811.8438.60710587.78250-0.422403.122201.81380HepG2PKM
NHLRC3ENSG00000188811.8786.97630647.582900.281202.239701.53660HepG2PRPF4
NHLRC3ENSG00000188811.81007.149701175.07130-0.222501.875101.40750HepG2PTBP1
NHLRC3ENSG00000188811.81015.835301412.07450-0.475106.567105.73510HepG2PUM1
NHLRC3ENSG00000188811.81169.160501411.09870-0.271302.551301.90680HepG2PUM2
NHLRC3ENSG00000188811.8464.39390980.86020-1.078705.950004.94310HepG2RAVER1
NHLRC3ENSG00000188811.81000.429101291.86960-0.368803.294102.36720HepG2RBM15
NHLRC3ENSG00000188811.81079.251101282.89140-0.249402.026301.56460HepG2RBM22
NHLRC3ENSG00000188811.8962.624101307.79270-0.442106.246605.48940HepG2NELFE
NHLRC3ENSG00000188811.81035.948601217.93850-0.233502.210301.65210HepG2RECQL
NHLRC3ENSG00000188811.8461.24910691.58280-0.584405.262804.44520HepG2RPS19
NHLRC3ENSG00000188811.8602.087401120.01810-0.895507.513906.23660HepG2RPS2
NHLRC3ENSG00000188811.8770.654001143.20640-0.568903.840302.55930HepG2RPS5
NHLRC3ENSG00000188811.8461.46070690.24850-0.580902.355001.62350HepG2RRP9
NHLRC3ENSG00000188811.8590.971401355.05330-1.1972014.8635013.22880HepG2SF3A3
NHLRC3ENSG00000188811.8837.716101223.51120-0.546506.718305.86060HepG2SF3B4
NHLRC3ENSG00000188811.81616.677101275.359200.342004.819103.93340HepG2SLBP
NHLRC3ENSG00000188811.8695.11010893.28120-0.361904.277303.50850HepG2SMN1
NHLRC3ENSG00000188811.8611.52630998.95240-0.708003.914902.75810HepG2SMNDC1
NHLRC3ENSG00000188811.8852.103401449.00350-0.7660018.3847017.39520HepG2SRFBP1
NHLRC3ENSG00000188811.81968.888601258.121600.6460016.6079015.57170HepG2SSB
NHLRC3ENSG00000188811.8697.132101002.57340-0.524203.115501.75700HepG2SSRP1
NHLRC3ENSG00000188811.8555.96000782.32840-0.492802.965401.82220HepG2STIP1
NHLRC3ENSG00000188811.81264.810201493.74690-0.240002.786702.16340HepG2SUCLG1
NHLRC3ENSG00000188811.81593.502601147.724700.473306.548205.74930HepG2TAF15
NHLRC3ENSG00000188811.8716.53410843.25840-0.234901.780801.30800HepG2TRIM56
NHLRC3ENSG00000188811.81076.744301299.49300-0.271302.237901.45810HepG2TUFM
NHLRC3ENSG00000188811.8648.454901400.22080-1.110603.689602.54430HepG2U2AF2
NHLRC3ENSG00000188811.8868.632801201.72310-0.468307.178906.14120HepG2UPF1
NHLRC3ENSG00000188811.81009.517901235.21810-0.291102.933901.85930HepG2UTP18
NHLRC3ENSG00000188811.8476.106501160.21950-1.2850037.4788035.65040HepG2UTP3
NHLRC3ENSG00000188811.8907.68670639.073600.506107.211006.21090HepG2ZC3H8
NHLRC3ENSG00000188811.8613.130101321.66820-1.1081037.3980035.98640HepG2ZNF622
NHLRC3ENSG00000188811.8435.13190688.23720-0.661507.958107.06560K562AGGF1
NHLRC3ENSG00000188811.8531.77660716.13830-0.429403.090902.39950K562AKAP8L
NHLRC3ENSG00000188811.8445.17530665.36680-0.579802.330101.78460K562AQR
NHLRC3ENSG00000188811.8537.87240309.548200.797006.625905.26000K562BOP1
NHLRC3ENSG00000188811.8440.87540567.32070-0.363802.372001.35490K562CPEB4
NHLRC3ENSG00000188811.8467.95640586.97420-0.326902.358801.74990K562DDX47
NHLRC3ENSG00000188811.8536.29290770.63900-0.523005.797204.46880K562DKC1
NHLRC3ENSG00000188811.8356.78650459.19820-0.364102.436901.31510K562EIF2S1
NHLRC3ENSG00000188811.8481.81690334.953900.524404.264203.40000K562EIF2S2
NHLRC3ENSG00000188811.8250.98770406.90030-0.697105.609304.49100K562EIF3G
NHLRC3ENSG00000188811.8264.19570436.77140-0.725305.896504.70770K562EIF4A3
NHLRC3ENSG00000188811.8281.11040393.33250-0.484603.426402.11730K562EIF4B
NHLRC3ENSG00000188811.8252.56860381.25440-0.594104.179402.54400K562EWSR1
NHLRC3ENSG00000188811.8206.44030454.22320-1.1377014.4203013.14800K562FXR1
NHLRC3ENSG00000188811.8377.08500530.48230-0.492403.563802.34370K562HNRNPL
NHLRC3ENSG00000188811.8305.47790440.42180-0.527804.040402.95220K562HNRNPU
NHLRC3ENSG00000188811.8385.06210607.90660-0.658802.662101.83830K562MAGOH
NHLRC3ENSG00000188811.8530.26230727.51060-0.456302.799401.71660K562MAK16
NHLRC3ENSG00000188811.8485.12140268.593000.852806.561205.27590K562PCBP3
NHLRC3ENSG00000188811.8352.77060206.022700.775805.823204.66500K562POLR2G
NHLRC3ENSG00000188811.8253.48990590.58190-1.220206.190105.22960K562PTBP1
NHLRC3ENSG00000188811.8464.14460816.85100-0.815508.547307.10540K562PUF60
NHLRC3ENSG00000188811.8447.55770710.23880-0.666205.841405.08800K562PUS1
NHLRC3ENSG00000188811.8467.59740691.99910-0.565505.620104.80040K562RBM15
NHLRC3ENSG00000188811.8324.32990566.57120-0.804803.373502.44060K562RBM22
NHLRC3ENSG00000188811.8243.63510434.37430-0.834205.623904.37830K562SF3B4
NHLRC3ENSG00000188811.8314.36370578.91090-0.880903.865503.03580K562SRSF1
NHLRC3ENSG00000188811.8363.11480257.158900.497702.684901.68400K562UCHL5
NHLRC3ENSG00000188811.8448.16330720.08170-0.684103.287101.83670K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NHLRC3 is not available on ENCORE database.





5 RBPs can affect the splicing of NHLRC3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENHLRC3ENSG00000188811.8chr13+3961624139616442396137003961384839618226396183180.351000.000000.00005includedHepG2U2AF1
SENHLRC3ENSG00000188811.8chr13+3961624139616442396137003961384839618226396183180.192000.000940.05379includedHepG2NCBP2
SENHLRC3ENSG00000188811.8chr13+3961624139616442396137003961384839618226396183180.339000.000340.04369includedHepG2LARP4
SENHLRC3ENSG00000188811.8chr13+3961624139616442396137003961384839618226396183180.253000.000360.02138includedHepG2PCBP1
SENHLRC3ENSG00000188811.8chr13+396162413961644239613642396138483961822639618318-0.250000.000040.01885excludedHepG2NOL12

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NHLRC3 is not avaliable on ENCORE database.