NUDCD3

General Information

Gene Name       : NUDCD3
Gene ID             : ENSG00000015676.17
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: NUDCD3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NUDCD3ENSG00000015676.1727.1133.9030.50ENCSR000AEF
HepG2NUDCD3ENSG00000015676.1744.5032.0238.26ENCSR985KAT
K562NUDCD3ENSG00000015676.1726.4628.6727.57ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NUDCD3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NUDCD3 RNA is bound by 35 proteins.  







eCLIP assay for NUDCD3 is not avaliable on ENCORE database.





35 proteins are bound to NUDCD3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr74442386344423911-3'-UTR,intron-Distal3.641697.91099K562UPF1
chr74442540244425430-3'-UTR,intron-Distal,intron-Proximal4.871416.42091K562UPF1
chr74442357844423640-3'-UTR,intron-Distal3.829964.51787HepG2AKAP1
chr74442501044425060-3'-UTR,intron-Distal4.297894.92727HepG2AKAP1
chr74442465444424697-3'-UTR,intron-Distal3.257176.06342K562UPF1
chr74442486944424914-3'-UTR,intron-Distal,intron-Proximal4.197074.51674HepG2AKAP1
chr74442518244425255-3'-UTR,intron-Distal4.049863.14375HepG2RBFOX2
chr74442509244425145-3'-UTR,intron-Distal4.228593.71567HepG2RBFOX2
chr74442492644424976-3'-UTR,intron-Distal,intron-Proximal4.018783.70195HepG2UPF1
chr74442350544423530-3'-UTR,intron-Distal3.708445.70786HepG2ZC3H11A
chr74442357144423642-3'-UTR,intron-Distal3.724788.86627HepG2DDX55
chr74442354244423652-3'-UTR,intron-Distal4.404045.07111HepG2UPF1
chr74442359044423661-3'-UTR,intron-Distal3.9345921.63474K562UPF1
chr74442499244425049-3'-UTR,intron-Distal4.336283.92497HepG2UPF1
chr74442519844425271-3'-UTR,intron-Distal3.971296.42285HepG2AKAP1
chr74442353544423634-3'-UTR,intron-Distal4.3866211.88113K562PABPC4
chr74442353044423560-3'-UTR,intron-Distal3.097245.00685HepG2ZC3H11A
chr74442373244423811-3'-UTR,intron-Distal4.6859515.51277K562UPF1
chr74442499744425058-3'-UTR,intron-Distal5.7920612.42760K562UPF1
chr74442386544423923-3'-UTR,intron-Distal4.265824.66439HepG2AKAP1
chr74442357544423641-3'-UTR,intron-Distal4.511093.18753K562AKAP1
chr74442450144424553-3'-UTR,intron-Distal4.665154.39606K562AKAP1
chr74442539544425444-3'-UTR,intron-Distal,intron-Proximal4.401544.20997HepG2UPF1
chr74442375044423813-3'-UTR,intron-Distal3.913923.35877HepG2UPF1
chr74442367744423701-3'-UTR,intron-Distal4.837856.42091K562UPF1
chr74442409744424168-3'-UTR,intron-Distal4.7177015.13329K562UPF1
chr74452460944524861-CDS,intron-Distal,intron-Proximal5.1904310.04362K562TRA2A
chr74444401344444164-CDS,intron-Distal,intron-Proximal4.190533.85450K562SRSF1
chr74444397144444077-CDS,intron-Distal,intron-Proximal3.908088.79725K562PRPF8
chr74452457044524728-CDS,intron-Distal,intron-Proximal3.1368110.27886K562ZNF622
chr74443198544432078-CDS,intron-Distal3.113875.59833HepG2GRWD1
chr74452473644524871-CDS,intron-Distal3.7090915.61764K562ZNF622
chr74452473544524880-CDS,intron-Distal,intron-Proximal3.8830510.84205HepG2GRWD1
chr74452471644524815-CDS,intron-Distal3.098433.22540HepG2G3BP1
chr74452475044524818-CDS,intron-Distal3.947144.31828HepG2SRSF1
chr74446716444467247-CDS,intron-Distal,intron-Proximal4.584685.52963HepG2PPIG
chr74452457044524709-CDS,intron-Distal,intron-Proximal3.616749.94493HepG2PPIG
chr74452457444524716-CDS,intron-Distal,intron-Proximal4.1878410.57092HepG2BCLAF1
chr74452463044524711-CDS,intron-Distal,intron-Proximal3.002165.39456HepG2GRWD1
chr74452455644524626-CDS,intron-Distal,intron-Proximal3.583535.28199HepG2GRWD1
chr74444401544444080-CDS,intron-Distal,intron-Proximal3.881843.42611HepG2SRSF1
chr74452460844524736-CDS,intron-Distal,intron-Proximal3.864387.41979K562GRWD1
chr74443196244432033-CDS,intron-Distal,intron-Proximal3.347413.05161HepG2PPIG
chr74443206944432156-CDS,intron-Distal,intron-Proximal4.191757.80703K562SF3B4
chr74452456644524691-CDS,intron-Distal,intron-Proximal3.455604.36101K562MTPAP
chr74452473944524867-CDS,intron-Distal3.5445716.01821HepG2PPIG
chr74452471644524805-CDS,intron-Distal3.567879.28980HepG2BCLAF1
chr74452473144524867-CDS,intron-Distal3.959286.13747HepG2TRA2A
chr74443204644432096-CDS,intron-Distal,intron-Proximal3.657905.25527HepG2U2AF2
chr74443207444432155-CDS,intron-Distal,intron-Proximal3.920086.84121HepG2SF3B4
chr74452462844524714-CDS,intron-Distal,intron-Proximal3.628803.89440HepG2ZNF800
chr74452476844524877-CDS,intron-Distal,intron-Proximal3.580294.72836K562ZNF800
chr74453006744530149-CDS,intron-Distal4.193853.81597K562RBM15
chr74452473544524852-CDS,intron-Distal5.4940316.95500K562UCHL5
chr74443189744431985-CDS,intron-Distal,intron-Proximal3.994047.73111HepG2GRWD1
chr74444399944444073-CDS,intron-Distal,intron-Proximal5.0650138.52822HepG2PRPF8
chr74452473844524840-CDS,intron-Distal3.8821715.17969HepG2BUD13
chr74452473744524812-CDS,intron-Distal4.138113.05875K562RBM15
chr74452473644524877-CDS,intron-Distal,intron-Proximal3.9030014.20230K562GRWD1
chr74446235744462423-intron-Distal4.182983.24322HepG2MATR3
chr74446234244462434-intron-Distal4.8385011.25934K562EXOSC5
chr74450984344509903-intron-Distal3.832634.87260HepG2HNRNPM
chr74447293744472980-intron-Distal4.482933.19026HepG2HNRNPL
chr74444843444448484-intron-Distal3.482534.60009HepG2SUGP2
chr74444769844447778-intron-Distal4.477534.78128HepG2SUGP2
chr74451670344516760-intron-Distal3.310663.84494HepG2QKI
chr74447285244472937-intron-Distal5.1424612.22547HepG2HNRNPL
chr74447300944473129-intron-Distal5.0193131.17486K562AGGF1
chr74446312244463153-intron-Distal4.638545.12432K562EXOSC5
chr74444320444443263-intron-Distal4.0540711.28398K562TIA1
chr74448710344487178-intron-Distal3.897453.07980HepG2HNRNPM
chr74447247344472523-intron-Distal3.777123.39667K562HNRNPL
chr74447301244473049-intron-Distal3.577673.60923HepG2HNRNPL
chr74444677944446853-intron-Distal3.139094.67779HepG2SUGP2
chr74444764544447721-intron-Distal3.896753.33944K562MATR3
chr74452449444524553-intron-Distal,intron-Proximal3.929143.45860K562TIA1
chr74446073744460774-intron-Distal4.067537.01333K562EXOSC5
chr74447285144472944-intron-Distal5.7169925.09636K562AGGF1
chr74444627544446346-intron-Distal3.618185.54651HepG2SUGP2
chr74447285644472947-intron-Distal4.553214.13073HepG2GTF2F1
chr74450298244503027-intron-Distal4.132613.86368HepG2HNRNPM
chr74446092044460935-intron-Distal5.034546.41304K562EXOSC5
chr74445798244458122-intron-Distal4.331515.30489K562TARDBP
chr74443963444439695-intron-Distal3.334683.90822HepG2HNRNPM
chr74446333744463383-intron-Distal4.258273.89085K562EXOSC5
chr74450820144508295-intron-Distal3.123653.46325HepG2SUGP2
chr74449840644498476-intron-Distal3.328676.53661K562AGGF1
chr74448070744480793-intron-Distal4.546055.20135HepG2QKI
chr74447304944473088-intron-Distal3.475054.81596HepG2HNRNPL
chr74451533144515392-intron-Distal3.786383.30744K562PTBP1
chr74449847644498537-intron-Distal5.462149.36197K562AGGF1
chr74450170044501776-intron-Distal4.086753.69425K562TARDBP
chr74450818144508266-intron-Distal3.426894.28420HepG2HNRNPM
chr74446296544463006-intron-Distal3.288733.15041K562EXOSC5
chr74448903744489086-intron-Distal4.182983.78432HepG2MATR3
chr74446088844460920-intron-Distal5.332788.69609K562EXOSC5
chr74451244844512517-intron-Distal3.602144.61500HepG2HNRNPM
chr74443302644433137-intron-Distal3.885123.61897HepG2HNRNPC
chr74447283044472960-intron-Distal4.143137.75636K562HNRNPL
chr74443805844438185-intron-Distal3.641254.97824K562TAF15
chr74442932444429436-intron-Distal3.8641211.59957HepG2PCBP2
chr74444897744449020-intron-Distal3.327754.14346HepG2SUGP2
chr74448831844488376-intron-Distal4.299464.61447HepG2SUGP2
chr74442935344429430-intron-Distal3.939646.84523K562PTBP1
chr74449839544498540-intron-Distal4.5373812.08125K562HNRNPL
chr74446234344462394-intron-Distal4.743865.04680K562HNRNPM
chr74444607944446145-intron-Distal3.804795.79523HepG2SUGP2
chr74444336944443420-intron-Distal5.306797.88130HepG2U2AF2
chr74449840444498485-intron-Distal4.812418.75025HepG2HNRNPL
chr74449854144498629-intron-Distal3.9155710.18786HepG2HNRNPL
chr74447300844473132-intron-Distal5.5675413.94923K562HNRNPL
chr74451532544515374-intron-Distal3.249703.35050HepG2SUGP2
chr74445163044451734-intron-Distal3.526753.91859HepG2SUGP2
chr74444816944448214-intron-Distal3.965753.29248HepG2SUGP2
chr74449848544498535-intron-Distal3.817735.38424HepG2HNRNPL
chr74447302444473108-intron-Distal4.539843.69238K562GTF2F1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NUDCD3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NUDCD3 is not available on ENCORE database.

  • 55 RBPs can affect the levels of NUDCD3.  








The Knockdown/knockout RNA-Seq assay for NUDCD3 is not available on ENCORE database.





55 RBPs can affect the gene expression of NUDCD3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NUDCD3ENSG00000015676.131339.22350942.893700.506109.008808.03980HepG2ACO1
NUDCD3ENSG00000015676.13906.51810698.303800.376402.662602.07440HepG2BOP1
NUDCD3ENSG00000015676.13687.663801061.15390-0.625905.872404.77550HepG2CIRBP
NUDCD3ENSG00000015676.13737.00510942.61690-0.355004.185303.40020HepG2CKAP4
NUDCD3ENSG00000015676.13459.51820641.07350-0.480403.339902.59230HepG2CPSF6
NUDCD3ENSG00000015676.131044.06980872.008500.259702.713301.88720HepG2DDX19B
NUDCD3ENSG00000015676.131003.54580812.737500.304102.043501.45020HepG2DDX21
NUDCD3ENSG00000015676.13543.06370748.62080-0.463102.606201.53640HepG2AGO1
NUDCD3ENSG00000015676.131385.812801609.76570-0.216102.108701.56910HepG2ETF1
NUDCD3ENSG00000015676.131151.76750921.311800.322002.535201.73530HepG2EWSR1
NUDCD3ENSG00000015676.131478.156801082.504100.449302.729301.96530HepG2FIP1L1
NUDCD3ENSG00000015676.13472.46690689.37100-0.545104.410602.83200HepG2FKBP4
NUDCD3ENSG00000015676.13901.984201153.18040-0.354403.836302.76230HepG2HNRNPA2B1
NUDCD3ENSG00000015676.13595.87380841.74920-0.498404.058903.23080HepG2HNRNPC
NUDCD3ENSG00000015676.13700.814101118.31490-0.674207.231406.14250HepG2HNRNPK
NUDCD3ENSG00000015676.13462.41770746.65890-0.691307.644806.18590HepG2HNRNPM
NUDCD3ENSG00000015676.13826.897201129.24510-0.449602.615601.64360HepG2KHSRP
NUDCD3ENSG00000015676.131551.580901123.708600.465403.112902.22890HepG2LARP4
NUDCD3ENSG00000015676.13935.734401194.50170-0.352204.148803.43330HepG2PCBP1
NUDCD3ENSG00000015676.13617.17140879.39720-0.510802.771101.72900HepG2PCBP2
NUDCD3ENSG00000015676.13954.741101187.73530-0.315002.382501.82300HepG2PUF60
NUDCD3ENSG00000015676.131011.402701259.91230-0.317002.774002.10240HepG2PUM2
NUDCD3ENSG00000015676.131214.77540960.387900.338904.213003.48060HepG2PUS1
NUDCD3ENSG00000015676.131418.223301055.970400.425404.858803.76080HepG2RBM15
NUDCD3ENSG00000015676.131786.153601345.464400.408705.755305.07660HepG2RBM22
NUDCD3ENSG00000015676.13979.679101194.68250-0.286202.121201.52500HepG2RBM25
NUDCD3ENSG00000015676.13777.656001001.23730-0.364602.295801.40140HepG2RBM27
NUDCD3ENSG00000015676.13762.35580616.099700.307202.011901.47990HepG2RPS19
NUDCD3ENSG00000015676.13607.09300853.08880-0.490802.993201.63370HepG2SART3
NUDCD3ENSG00000015676.131019.48340868.397000.231302.254401.66420HepG2SMN1
NUDCD3ENSG00000015676.13427.61480763.75400-0.836805.563204.44370HepG2SNRNP70
NUDCD3ENSG00000015676.131920.296201519.649400.337505.089704.46850HepG2SRFBP1
NUDCD3ENSG00000015676.13933.783401320.84550-0.500307.869107.16640HepG2SRSF1
NUDCD3ENSG00000015676.13843.358401074.58270-0.349604.076003.43070HepG2SRSF9
NUDCD3ENSG00000015676.13903.780801187.24210-0.393604.282003.60780HepG2TAF15
NUDCD3ENSG00000015676.13540.46810819.77230-0.601008.594307.68710HepG2TRIM56
NUDCD3ENSG00000015676.13366.67340486.99060-0.409402.482901.76330HepG2UCHL5
NUDCD3ENSG00000015676.131305.16310975.570200.419807.112706.34100HepG2ZNF622
NUDCD3ENSG00000015676.13972.740501167.77770-0.263602.501701.59140K562BCLAF1
NUDCD3ENSG00000015676.131613.203802921.24630-0.8567020.8730018.49820K562CELF1
NUDCD3ENSG00000015676.13734.720101068.47550-0.540304.945303.70770K562EFTUD2
NUDCD3ENSG00000015676.13894.48470732.588100.288002.225801.50580K562EIF3G
NUDCD3ENSG00000015676.131516.907301162.300700.384003.347402.40740K562FIP1L1
NUDCD3ENSG00000015676.13659.51880898.69480-0.446403.071201.87010K562FKBP4
NUDCD3ENSG00000015676.13511.09650667.10810-0.384302.100001.30960K562FTO
NUDCD3ENSG00000015676.131240.714001053.625700.235702.075201.53680K562FXR1
NUDCD3ENSG00000015676.13475.55710755.57840-0.668004.667003.69560K562G3BP2
NUDCD3ENSG00000015676.13768.147301035.11250-0.430303.771303.08730K562HNRNPC
NUDCD3ENSG00000015676.13684.76230956.03920-0.481503.355302.32270K562HNRNPM
NUDCD3ENSG00000015676.13447.74470630.62880-0.494102.631301.72300K562KRR1
NUDCD3ENSG00000015676.132023.962602532.56090-0.323402.566401.48170K562MSI2
NUDCD3ENSG00000015676.131211.913701452.22030-0.261003.340902.52750K562NSUN2
NUDCD3ENSG00000015676.13699.896001048.28610-0.582805.235503.87480K562PCBP2
NUDCD3ENSG00000015676.132049.664102592.37020-0.338902.740201.92830K562PUF60
NUDCD3ENSG00000015676.132239.757902701.70510-0.270503.007102.00920K562PUM2
NUDCD3ENSG00000015676.131175.724401465.75250-0.318102.058201.57670K562PUS1
NUDCD3ENSG00000015676.131041.255901433.11060-0.460806.582605.37290K562SF3A3
NUDCD3ENSG00000015676.13498.42170702.38460-0.494903.032802.01410K562SF3B1
NUDCD3ENSG00000015676.13624.62820812.79420-0.379902.635301.40420K562SLBP
NUDCD3ENSG00000015676.13681.147801006.66900-0.563504.474103.15610K562SUPV3L1
NUDCD3ENSG00000015676.13896.937201135.79940-0.340602.345901.69210K562TARDBP
NUDCD3ENSG00000015676.13519.29570756.38390-0.542605.474704.34860K562U2AF2
NUDCD3ENSG00000015676.13585.007101065.45220-0.8649010.723608.67600K562UCHL5
NUDCD3ENSG00000015676.131671.178002100.67160-0.330002.969102.07080K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NUDCD3 is not available on ENCORE database.





8 RBPs can affect the splicing of NUDCD3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENUDCD3ENSG00000015676.13chr7-4452512944525221445245664452488344530007445302050.113000.004240.06648includedHepG2U2AF1
SENUDCD3ENSG00000015676.13chr7-4443411144434216444318954443208444444038444441820.072000.000050.00153includedHepG2U2AF1
SENUDCD3ENSG00000015676.13chr7-4452512944525221445245664452488344530007445302050.138000.000000.00053includedK562XRCC6
SENUDCD3ENSG00000015676.13chr7-4443411144434216444318954443208444444038444441820.178000.000000.00000includedHepG2U2AF2
SENUDCD3ENSG00000015676.13chr7-4452512944525221445245664452488344530007445302050.136000.000000.00000includedK562AQR
SENUDCD3ENSG00000015676.13chr7-4452512944525221445245664452488344530007445302050.084000.000260.01038includedHepG2SF3A3
SENUDCD3ENSG00000015676.13chr7-4452512944525221445245664452488344530007445302050.200000.001530.08707includedHepG2IGF2BP3
SENUDCD3ENSG00000015676.13chr7-4452512944525221445245664452488344530007445302050.173000.000060.01524includedHepG2KHSRP
SENUDCD3ENSG00000015676.13chr7-4452512944525221445245664452488344530007445302050.173000.000100.00274includedK562HNRNPC
A3SSNUDCD3ENSG00000015676.13chr7-4443189544432120444318954443208444444038444441820.068000.000060.00052longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NUDCD3 is not avaliable on ENCORE database.