TSSC1

General Information

Gene Name : TSSC1
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TSSC1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TSSC1 is not avaliable on ENCORE database.

Proteins bound to RNA

TSSC1 RNA is bound by 54 proteins.

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eCLIP assay for TSSC1 is not avaliable on ENCORE database.

54 proteins are bound to TSSC1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	3353269	3353438	-	intron-Distal	8.49604	190.70531	K562	DROSHA
chr2	3353345	3353403	-	intron-Distal	7.50160	154.98267	HepG2	RBFOX2
chr2	3353403	3353463	-	intron-Distal	8.55962	108.89888	HepG2	RBFOX2
chr2	3353270	3353345	-	intron-Distal	6.78794	81.15674	HepG2	RBFOX2
chr2	3353256	3353509	-	intron-Distal	6.86312	67.76070	K562	RBFOX2
chr2	3353463	3353493	-	intron-Distal	7.80871	65.38382	HepG2	RBFOX2
chr2	3318766	3318835	-	intron-Distal	5.98247	57.71781	HepG2	CSTF2T
chr2	3318509	3318584	-	intron-Distal	5.92315	53.05803	HepG2	CSTF2T
chr2	3318861	3318945	-	intron-Distal	7.56646	52.21207	HepG2	FAM120A
chr2	3318713	3318742	-	intron-Distal	6.51865	50.02982	HepG2	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 531 entries

eCLIP assay for TSSC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TSSC1 is not available on ENCORE database.
65 RBPs can affect the levels of TSSC1.

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The Knockdown/knockout RNA-Seq assay for TSSC1 is not available on ENCORE database.

65 RBPs can affect the gene expression of TSSC1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TSSC1	ENSG00000032389.8	579.35430	1105.85810	-0.93260	18.54410	17.27870	HepG2	TAF15
TSSC1	ENSG00000032389.8	806.00230	478.07940	0.75340	12.89810	11.65910	HepG2	SAFB2
TSSC1	ENSG00000032389.8	712.70850	1164.35790	-0.70820	11.16270	10.27310	HepG2	RBM22
TSSC1	ENSG00000032389.8	403.96540	708.13230	-0.80980	11.02380	9.27050	K562	HNRNPU
TSSC1	ENSG00000032389.8	96.45350	244.08640	-1.33950	9.55670	7.75680	K562	FTO
TSSC1	ENSG00000032389.8	489.55570	896.49400	-0.87280	7.97210	7.06220	K562	AQR
TSSC1	ENSG00000032389.8	113.75900	266.18370	-1.22640	8.59800	7.01320	K562	BOP1
TSSC1	ENSG00000032389.8	1328.31100	1000.56360	0.40870	7.32630	6.45650	HepG2	PUM1
TSSC1	ENSG00000032389.8	954.75280	1315.10660	-0.46200	7.05760	6.35900	HepG2	SRFBP1
TSSC1	ENSG00000032389.8	777.30230	1177.89790	-0.59970	7.68460	6.08420	K562	CELF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 69 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TSSC1 is not available on ENCORE database.

5 RBPs can affect the splicing of TSSC1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TSSC1	ENSG00000032389.8	chr2	-	3278109	3278190			3261069	3261226	3341787	3341920	0.09300	0.00000	0.00003	included	HepG2	MATR3
SE	TSSC1	ENSG00000032389.8	chr2	-	3261069	3261226			3217919	3218019	3341787	3341920	-0.19800	0.00002	0.00046	excluded	K562	AQR
MXE	TSSC1	ENSG00000032389.8	chr2	-	3341787	3341920	3358320	3358404	3261069	3261226	3381418	3381653	0.21100	0.00008	0.01464	1included	HepG2	KHSRP
MXE	TSSC1	ENSG00000032389.8	chr2	-	3217919	3218019	3341787	3341951	3200651	3200788	3358320	3358404	0.07500	0.00028	0.00297	1included	K562	AQR
MXE	TSSC1	ENSG00000032389.8	chr2	-	3217919	3218019	3341787	3341972	3200651	3200788	3358320	3358404	0.06500	0.00043	0.00436	1included	K562	AQR
SE	TSSC1	ENSG00000032389.8	chr2	-	3261069	3261226			3217919	3218019	3341787	3341920	-0.07100	0.00140	0.06608	excluded	HepG2	PTBP1
SE	TSSC1	ENSG00000032389.8	chr2	-	3261069	3261226			3217919	3218019	3341787	3341920	-0.16600	0.00747	0.08421	excluded	K562	PUS1

Showing 1 to 7 of 7 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TSSC1

General Information

Functions

Localization

Domains (AlphaFold: TSSC1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TSSC1 is not avaliable on ENCORE database.

54 proteins are bound to TSSC1 RNA:

eCLIP assay for TSSC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TSSC1 is not available on ENCORE database.

65 RBPs can affect the gene expression of TSSC1 :

The Knockdown/knockout RNA-Seq assay for TSSC1 is not available on ENCORE database.

5 RBPs can affect the splicing of TSSC1 :

The Knockdown/knockout RNA-Seq assay for TSSC1 is not avaliable on ENCORE database.