TBC1D5

General Information

Gene Name : TBC1D5
Gene ID : ENSG00000131374.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TBC1D5)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TBC1D5	ENSG00000131374.14	36.38	29.77	33.08	ENCSR000AEF
HepG2	TBC1D5	ENSG00000131374.14	12.77	20.00	16.38	ENCSR985KAT
K562	TBC1D5	ENSG00000131374.14	15.76	16.26	16.01	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TBC1D5 is not avaliable on ENCORE database.

Proteins bound to RNA

TBC1D5 RNA is bound by 36 proteins.

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eCLIP assay for TBC1D5 is not avaliable on ENCORE database.

36 proteins are bound to TBC1D5 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	17484310	17484452	-	intron-Distal	6.14416	26.79427	HepG2	PCBP2
chr3	17201007	17201092	-	3'-UTR,intron-Distal	5.25610	17.24848	K562	UPF1
chr3	17200354	17200430	-	3'-UTR,intron-Distal	4.60516	14.74404	K562	UPF1
chr3	17538533	17538612	-	intron-Distal	4.70506	14.52639	K562	EIF4G2
chr3	17660629	17660859	-	intron-Distal	3.82328	14.03681	K562	KHSRP
chr3	17496887	17496973	-	intron-Distal	4.43175	13.97732	HepG2	HNRNPL
chr3	17469941	17470013	-	CDS,intron-Distal,intron-Proximal	4.87763	12.14572	HepG2	BCLAF1
chr3	17201093	17201184	-	3'-UTR,intron-Distal	4.01616	11.91585	K562	UPF1
chr3	17728355	17728455	-	intron-Distal	5.50905	11.64245	HepG2	QKI
chr3	17446182	17446218	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.84006	11.37040	K562	DDX24
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 169 entries

eCLIP assay for TBC1D5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TBC1D5 is not available on ENCORE database.
121 RBPs can affect the levels of TBC1D5.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TBC1D5 is not available on ENCORE database.

121 RBPs can affect the gene expression of TBC1D5 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TBC1D5	ENSG00000131374.10	418.74730	2387.57010	-2.51140	80.51480	77.55440	HepG2	DDX3X
TBC1D5	ENSG00000131374.10	384.50020	2263.53890	-2.55750	78.98080	75.96330	HepG2	NCBP2
TBC1D5	ENSG00000131374.10	627.46420	1817.48250	-1.53430	46.81530	44.08020	K562	SRSF1
TBC1D5	ENSG00000131374.10	410.02700	1305.69370	-1.67100	43.60780	41.33320	K562	HNRNPC
TBC1D5	ENSG00000131374.10	752.89920	1721.07490	-1.19280	43.10800	41.15670	HepG2	UTP3
TBC1D5	ENSG00000131374.10	585.57080	1583.82150	-1.43550	33.67760	31.57190	HepG2	HNRNPC
TBC1D5	ENSG00000131374.10	766.76850	2178.95570	-1.50680	29.08180	27.04360	HepG2	EIF4A3
TBC1D5	ENSG00000131374.10	905.16770	2062.26890	-1.18800	21.74960	19.82150	HepG2	ASCC1
TBC1D5	ENSG00000131374.10	792.34620	1899.75870	-1.26160	21.56850	19.29030	HepG2	UBE2L3
TBC1D5	ENSG00000131374.10	850.78890	1777.71020	-1.06310	21.01860	18.47990	K562	RBM22
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 144 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TBC1D5 is not available on ENCORE database.

17 RBPs can affect the splicing of TBC1D5 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TBC1D5	ENSG00000131374.10	chr3	-	17664139	17664257			17549965	17550097	17665340	17665405	-0.20800	0.00005	0.01678	excluded	K562	EIF4G2
SE	TBC1D5	ENSG00000131374.10	chr3	-	17560393	17560487			17549965	17550097	17665340	17665405	0.16500	0.00007	0.00498	included	HepG2	MATR3
SE	TBC1D5	ENSG00000131374.10	chr3	-	17664139	17664257			17549965	17550097	17665340	17665405	0.24400	0.00010	0.00331	included	K562	U2AF1
SE	TBC1D5	ENSG00000131374.10	chr3	-	17603510	17603634			17549965	17550097	17665340	17665405	-0.17600	0.00026	0.06665	excluded	K562	WDR43
MXE	TBC1D5	ENSG00000131374.10	chr3	-	17603510	17603634	17664139	17664257	17549965	17550097	17665340	17665405	0.53300	0.00051	0.03582	1included	HepG2	LARP4
MXE	TBC1D5	ENSG00000131374.10	chr3	-	17549965	17550097	17665340	17665405	17469941	17470011	17783972	17784107	0.31500	0.00054	0.02559	1included	K562	TAF15
MXE	TBC1D5	ENSG00000131374.10	chr3	-	17560393	17560487	17603510	17603634	17549965	17550097	17665340	17665405	0.73300	0.00065	0.04291	1included	K562	LARP7
SE	TBC1D5	ENSG00000131374.10	chr3	-	17627844	17628049			17550040	17550097	17665340	17665405	0.25400	0.00076	0.04591	included	HepG2	NCBP2
SE	TBC1D5	ENSG00000131374.10	chr3	-	17664139	17664257			17549965	17550097	17665340	17665405	0.19100	0.00089	0.04093	included	K562	HNRNPK
MXE	TBC1D5	ENSG00000131374.10	chr3	-	17549965	17550097	17665340	17665405	17469941	17470011	17783972	17784107	-0.29900	0.00101	0.06027	2included	HepG2	TBRG4

Showing 1 to 10 of 27 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TBC1D5

General Information

Functions

Localization

Domains (AlphaFold: TBC1D5)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TBC1D5 is not avaliable on ENCORE database.

36 proteins are bound to TBC1D5 RNA:

eCLIP assay for TBC1D5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TBC1D5 is not available on ENCORE database.

121 RBPs can affect the gene expression of TBC1D5 :

The Knockdown/knockout RNA-Seq assay for TBC1D5 is not available on ENCORE database.

17 RBPs can affect the splicing of TBC1D5 :

The Knockdown/knockout RNA-Seq assay for TBC1D5 is not avaliable on ENCORE database.