FAM129A

General Information

Gene Name       : FAM129A
Gene ID             : ENSG00000135842.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM129A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FAM129AENSG00000135842.1643.5742.3742.97ENCSR000AEF
HepG2FAM129AENSG00000135842.160.000.000.00ENCSR985KAT
K562FAM129AENSG00000135842.1614.6313.0013.82ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM129A is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM129A RNA is bound by 19 proteins.  







eCLIP assay for FAM129A is not avaliable on ENCORE database.





19 proteins are bound to FAM129A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1184761130184761202-3'-UTR,intron-Distal5.413859.83131K562UPF1
chr1184763094184763127-3'-UTR,intron-Distal4.504144.22051K562UPF1
chr1184762192184762282-3'-UTR,intron-Distal3.987113.74511K562IGF2BP1
chr1184762549184762637-3'-UTR,intron-Distal5.3840518.93168K562UPF1
chr1184761202184761253-3'-UTR,intron-Distal4.706344.56348K562UPF1
chr1184762637184762692-3'-UTR,intron-Distal3.507928.21835K562UPF1
chr1184761031184761082-3'-UTR,intron-Distal3.431205.35486K562UPF1
chr1184762914184762950-3'-UTR,intron-Distal4.671145.24231K562UPF1
chr1184943533184943571-5'-UTR,intron-Distal4.2030412.88307K562RBM15
chr1184943571184943582-5'-UTR,intron-Distal5.4561110.73550K562RBM15
chr1184787864184787911-CDS,intron-Distal3.671884.24220K562ZNF622
chr1184787892184787960-CDS,intron-Distal,intron-Proximal3.434833.43213K562UCHL5
chr1184863208184863225-CDS,intron-Distal,intron-Proximal4.234653.43980K562ZNF622
chr1184943387184943441-CDS,intron-Distal4.853345.17615K562AQR
chr1184863225184863299-CDS,intron-Distal5.197467.84234K562ZNF622
chr1184863206184863251-CDS,intron-Distal,intron-Proximal3.239254.05781K562DDX24
chr1184859274184859357-CDS,intron-Distal,intron-Proximal3.059405.46666K562ZNF622
chr1184764589184764705-CDS,intron-Distal3.375174.40995K562GRWD1
chr1184792728184792778-CDS,intron-Distal,intron-Proximal3.812114.49024K562AQR
chr1184792766184792811-CDS,intron-Distal,intron-Proximal4.202103.87582K562ZNF622
chr1184863299184863341-CDS,intron-Distal,intron-Proximal4.850443.86495K562DDX24
chr1184764586184764717-CDS,intron-Distal4.193016.11943K562UCHL5
chr1184775131184775233-CDS,intron-Distal,intron-Proximal4.895794.65563K562AQR
chr1184915371184915461-intron-Distal3.348865.61499K562QKI
chr1184846150184846190-intron-Distal3.521323.90146K562KHSRP
chr1184849821184849859-intron-Distal3.642723.06712K562HNRNPU
chr1184914020184914103-intron-Distal4.135773.06015K562MATR3
chr1184836217184836278-intron-Distal4.533893.60944K562TARDBP
chr1184910215184910294-intron-Distal3.793324.22415K562PTBP1
chr1184898023184898102-intron-Distal4.266085.16344K562SAFB2
chr1184830599184830721-intron-Distal6.4403418.69613K562PTBP1
chr1184830550184830663-intron-Distal4.406799.68998K562ILF3
chr1184841320184841397-intron-Distal5.548588.73280K562QKI
chr1184837641184837700-intron-Distal,intron-Proximal3.832823.07287K562TIA1
chr1184836255184836337-intron-Distal3.556735.95678K562UPF1
chr1184777145184777208-intron-Distal,intron-Proximal5.634817.28294K562AQR
chr1184836221184836331-intron-Distal4.514927.66106K562EIF4G2
chr1184830573184830693-intron-Distal3.983967.39596K562CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM129A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM129A is not available on ENCORE database.

  • 63 RBPs can affect the levels of FAM129A.  








The Knockdown/knockout RNA-Seq assay for FAM129A is not available on ENCORE database.





63 RBPs can affect the gene expression of FAM129A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM129AENSG00000135842.1234.500100.645305.740302.757802.15800HepG2ETF1
FAM129AENSG00000135842.126.849000.0000099999.999901.875501.30960HepG2IGF2BP2
FAM129AENSG00000135842.121478.869003921.17970-1.4068042.1996040.02430K562AGGF1
FAM129AENSG00000135842.122566.416104308.41910-0.7474014.3087011.65550K562AKAP8
FAM129AENSG00000135842.121507.982404080.07550-1.4360023.3321021.08940K562AKAP8L
FAM129AENSG00000135842.121034.701501515.46940-0.550606.733404.69360K562APOBEC3C
FAM129AENSG00000135842.122520.555004280.81190-0.7641014.9724012.65070K562ATP5C1
FAM129AENSG00000135842.12725.784901107.01840-0.609105.991604.69720K562BOP1
FAM129AENSG00000135842.12831.757001704.82830-1.035408.993207.05670K562CNOT7
FAM129AENSG00000135842.121513.387101177.072800.362503.481302.59950K562CPSF6
FAM129AENSG00000135842.12488.11400724.42650-0.569606.873504.79630K562DDX27
FAM129AENSG00000135842.12681.01360894.12660-0.392803.331802.17570K562DDX3X
FAM129AENSG00000135842.12781.494501527.70760-0.9671027.2192025.38250K562DDX47
FAM129AENSG00000135842.122650.131604391.01590-0.728509.595507.76260K562DKC1
FAM129AENSG00000135842.12463.03970736.62040-0.669805.921904.55250K562EFTUD2
FAM129AENSG00000135842.123428.42650973.348001.81640106.18820103.43670K562EIF2S2
FAM129AENSG00000135842.12441.08630788.78800-0.838606.206504.56940K562EIF3D
FAM129AENSG00000135842.12622.633501187.09130-0.931006.080304.91560K562EIF3G
FAM129AENSG00000135842.121357.35610934.120500.539005.875804.68780K562EIF4A3
FAM129AENSG00000135842.12644.329101072.68720-0.735408.954607.33610K562FIP1L1
FAM129AENSG00000135842.121829.511701197.654100.611107.301705.87710K562FMR1
FAM129AENSG00000135842.121300.606801015.124500.357402.398301.55180K562FTO
FAM129AENSG00000135842.12645.49960971.44240-0.589708.175207.20410K562FXR1
FAM129AENSG00000135842.121297.65550931.410100.478303.073902.32230K562G3BP2
FAM129AENSG00000135842.12625.752801297.05780-1.0516019.2499017.17020K562GRSF1
FAM129AENSG00000135842.121165.20880896.575500.378002.927401.82170K562HNRNPA1
FAM129AENSG00000135842.121097.65210775.726200.500705.007104.22730K562HNRNPC
FAM129AENSG00000135842.12615.39660882.33920-0.519803.696402.60790K562HNRNPM
FAM129AENSG00000135842.124561.925201454.281701.6492055.0957052.39680K562HSPD1
FAM129AENSG00000135842.122076.630104330.29420-1.060208.733307.05380K562KIF1C
FAM129AENSG00000135842.122575.189404144.90210-0.686702.789201.70870K562MAK16
FAM129AENSG00000135842.122591.664204850.97940-0.9044023.6786020.78120K562MBNL1
FAM129AENSG00000135842.12867.912901122.53500-0.371104.507403.49630K562MTPAP
FAM129AENSG00000135842.121380.943703400.15760-1.2999017.4236014.63540K562NAA15
FAM129AENSG00000135842.121029.896202814.43110-1.450303.083602.02720K562PABPN1
FAM129AENSG00000135842.12599.504301182.09790-0.9795015.8938013.44940K562PCBP2
FAM129AENSG00000135842.12644.530601120.12720-0.797308.696107.22510K562PCBP3
FAM129AENSG00000135842.123238.132801764.824800.8755019.6006016.85610K562PNPT1
FAM129AENSG00000135842.12458.07940859.19140-0.9074013.6412011.93240K562POLR2G
FAM129AENSG00000135842.12332.61830716.81410-1.1077013.1651011.52030K562PRPF8
FAM129AENSG00000135842.12506.588801290.84000-1.3494033.8193031.59130K562PTBP1
FAM129AENSG00000135842.123196.319901993.460600.6810013.6993011.27010K562PUM1
FAM129AENSG00000135842.121148.058804046.95720-1.8176044.7533042.49590K562PUS1
FAM129AENSG00000135842.121139.868003942.61820-1.7903056.8791054.06270K562RBM15
FAM129AENSG00000135842.121889.501801230.074500.619208.969106.16880K562RBM17
FAM129AENSG00000135842.12957.593901237.65870-0.370102.986802.11020K562RBM22
FAM129AENSG00000135842.12469.32070634.72820-0.435603.277602.19670K562RCC2
FAM129AENSG00000135842.12970.068601302.46180-0.425103.492902.24420K562NELFE
FAM129AENSG00000135842.12543.57800730.22170-0.425802.242201.51120K562RPS19
FAM129AENSG00000135842.12909.784101260.88830-0.470807.689006.21380K562SRPK2
FAM129AENSG00000135842.12626.772901265.47460-1.0137019.3670017.50580K562SRSF1
FAM129AENSG00000135842.121954.865701433.082600.447805.095003.59080K562SRSF4
FAM129AENSG00000135842.122355.799901224.446000.944002.839301.54290K562SSB
FAM129AENSG00000135842.121642.797401287.191200.351802.554901.35700K562STAU1
FAM129AENSG00000135842.12698.29760861.76980-0.303502.180001.45040K562SYNCRIP
FAM129AENSG00000135842.12835.394601280.69740-0.616406.646505.50830K562TARDBP
FAM129AENSG00000135842.121272.48110971.137100.389803.154801.44390K562TBRG4
FAM129AENSG00000135842.121531.628801235.389200.310002.772801.95400K562TIA1
FAM129AENSG00000135842.121150.91760932.675500.303202.562901.78920K562U2AF2
FAM129AENSG00000135842.121966.495804102.54360-1.060904.764002.90150K562UTP18
FAM129AENSG00000135842.121701.309901129.172100.591305.614203.91310K562UTP3
FAM129AENSG00000135842.12799.851501176.72930-0.5570010.031508.53730K562WDR43
FAM129AENSG00000135842.122002.063401293.979400.629608.975307.29570K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM129A is not available on ENCORE database.





1 RBPs can affect the splicing of FAM129A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFAM129AENSG00000135842.12chr1-1848377401848378441848009801848010961848537661848539340.111000.000090.00261includedK562U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FAM129A is not avaliable on ENCORE database.