SNX11

General Information

Gene Name       : SNX11
Gene ID             : ENSG00000002919.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNX11)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNX11ENSG00000002919.1449.1144.9547.03ENCSR000AEF
HepG2SNX11ENSG00000002919.148.6310.069.35ENCSR985KAT
K562SNX11ENSG00000002919.1411.8910.0410.96ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNX11 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNX11 RNA is bound by 4 proteins.  







eCLIP assay for SNX11 is not avaliable on ENCORE database.





4 proteins are bound to SNX11 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174620000746200076+3'-UTR4.531657.50817K562UPF1
chr174619995146200007+3'-UTR3.934188.24727K562UPF1
chr174619975246199826+3'-UTR4.326317.89119K562UPF1
chr174619961646199664+3'-UTR5.222198.40676K562UPF1
chr174619915046199192+3'-UTR5.351514.37209K562PUM2
chr174619966346199718+3'-UTR3.803573.19379HepG2AKAP1
chr174619939746199486+3'-UTR4.6004610.23575K562UPF1
chr174619994946200003+3'-UTR3.893863.34655HepG2AKAP1
chr174619950846199590+3'-UTR5.7635511.61967K562UPF1
chr174619966446199752+3'-UTR5.7464223.66216K562UPF1
chr174618976846189894+intron-Distal,intron-Proximal4.678656.45754K562TARDBP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNX11 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNX11 is not available on ENCORE database.

  • 53 RBPs can affect the levels of SNX11.  








The Knockdown/knockout RNA-Seq assay for SNX11 is not available on ENCORE database.





53 RBPs can affect the gene expression of SNX11 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNX11ENSG00000002919.10438.89470343.508000.353402.366601.79740HepG2ACO1
SNX11ENSG00000002919.101057.09940590.539700.839907.970907.11980HepG2AKAP1
SNX11ENSG00000002919.10734.38050463.483100.663907.626606.57810HepG2AUH
SNX11ENSG00000002919.10298.81500112.252801.4124012.3396011.19850HepG2BOP1
SNX11ENSG00000002919.10245.87250343.41370-0.482003.312202.59580HepG2CKAP4
SNX11ENSG00000002919.10560.77060435.742200.363803.478002.66430HepG2DAZAP1
SNX11ENSG00000002919.10686.10530485.946800.497502.982602.34340HepG2DDX6
SNX11ENSG00000002919.10228.99210328.63900-0.521203.223502.50220HepG2DKC1
SNX11ENSG00000002919.10243.79390130.699000.899304.785703.62150HepG2EIF3D
SNX11ENSG00000002919.10361.45350512.97430-0.505102.993802.06730HepG2G3BP2
SNX11ENSG00000002919.10182.81730273.04520-0.578702.637101.64300HepG2GNB2L1
SNX11ENSG00000002919.10275.36390190.466100.531702.406201.80010HepG2HNRNPA1
SNX11ENSG00000002919.10308.02910211.857500.539902.560801.89200HepG2HNRNPC
SNX11ENSG00000002919.10297.33680489.28670-0.718605.318504.37310HepG2HNRNPK
SNX11ENSG00000002919.10784.75930491.147600.676005.980705.02500HepG2IGF2BP2
SNX11ENSG00000002919.10323.54250494.01490-0.610603.259402.16010HepG2KHSRP
SNX11ENSG00000002919.10326.13710479.79690-0.556904.959404.18360HepG2PCBP1
SNX11ENSG00000002919.10287.99980437.90910-0.604605.393504.62150HepG2PUM1
SNX11ENSG00000002919.10494.50130349.882300.499004.485503.73790HepG2PUS1
SNX11ENSG00000002919.10419.78570254.603300.721303.192502.43900HepG2RAVER1
SNX11ENSG00000002919.10697.86430444.806200.649707.182906.43980HepG2RBM22
SNX11ENSG00000002919.10357.19940479.87280-0.425902.691602.02490HepG2RBM25
SNX11ENSG00000002919.10413.43800543.32680-0.394102.876302.32700HepG2NELFE
SNX11ENSG00000002919.10329.76820506.00570-0.617705.864905.01210HepG2RECQL
SNX11ENSG00000002919.10475.75260282.682200.750905.579204.65920HepG2RPLP0
SNX11ENSG00000002919.10376.40380210.896000.835605.374904.41680HepG2SF3A3
SNX11ENSG00000002919.10172.74520110.332400.646702.343801.69200HepG2SF3B1
SNX11ENSG00000002919.1071.04950122.76580-0.789002.039601.37360HepG2SNRNP70
SNX11ENSG00000002919.10890.97030502.371600.8265014.5090013.60060HepG2SRFBP1
SNX11ENSG00000002919.10315.88630431.61580-0.450303.525202.91890HepG2SRSF9
SNX11ENSG00000002919.10577.41450436.141500.404702.835302.31800HepG2SSB
SNX11ENSG00000002919.10321.59290476.83650-0.568304.752404.05050HepG2TAF15
SNX11ENSG00000002919.10148.54030204.50120-0.461301.886101.45610HepG2TIAL1
SNX11ENSG00000002919.1099.46420206.32600-1.052707.557006.70210HepG2TRIM56
SNX11ENSG00000002919.10298.14720212.483600.488601.907601.37570HepG2U2AF1
SNX11ENSG00000002919.10263.63760187.032200.495202.775602.07420HepG2UPF1
SNX11ENSG00000002919.10421.58040180.572701.2231013.9948012.80540HepG2UTP3
SNX11ENSG00000002919.10305.44580205.700000.570304.015003.38900HepG2ZNF622
SNX11ENSG00000002919.10429.80650323.418600.410202.552701.61510K562AKAP8
SNX11ENSG00000002919.10448.65890306.237000.550903.954203.17260K562AKAP8L
SNX11ENSG00000002919.101005.69560624.378400.687606.916706.05710K562AQR
SNX11ENSG00000002919.10493.84230326.296400.597803.154502.04450K562EIF3D
SNX11ENSG00000002919.10432.11110316.101700.450902.673301.86630K562EIF4A3
SNX11ENSG00000002919.10215.49230302.14480-0.487602.579101.35980K562EXOSC5
SNX11ENSG00000002919.10352.30040242.026400.541503.154502.24680K562FIP1L1
SNX11ENSG00000002919.10445.25300328.732700.437603.006402.37910K562FXR1
SNX11ENSG00000002919.10650.48890508.252100.355902.069601.40910K562GRSF1
SNX11ENSG00000002919.10280.72590196.964100.511102.343601.78800K562HNRNPC
SNX11ENSG00000002919.10548.78460380.197200.529403.015401.92790K562IGF2BP2
SNX11ENSG00000002919.10395.16370255.174700.630903.264902.29180K562NAA15
SNX11ENSG00000002919.10370.22440274.797300.429902.151401.43270K562PPIG
SNX11ENSG00000002919.10428.45970296.443100.531302.856002.09580K562PRPF8
SNX11ENSG00000002919.10634.90550388.181500.709707.822206.74540K562PTBP1
SNX11ENSG00000002919.10822.19780615.324000.418003.001402.15070K562PUF60
SNX11ENSG00000002919.10615.37860303.649401.0190011.2192010.17550K562PUS1
SNX11ENSG00000002919.10413.32840295.905100.482103.401102.75490K562RBM15
SNX11ENSG00000002919.10561.43100380.550800.560904.626303.71620K562SRSF1
SNX11ENSG00000002919.10113.05190180.51480-0.675102.598501.68810K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNX11 is not available on ENCORE database.





4 RBPs can affect the splicing of SNX11 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNX11ENSG00000002919.10chr17+4618806946188129461852554618534146189392461894470.505000.001060.08001includedHepG2G3BP1
SESNX11ENSG00000002919.10chr17+4618806946188129461849374618520046189392461894470.303000.001830.07567includedHepG2PCBP1
SESNX11ENSG00000002919.10chr17+4618806946188129461852554618534146189392461894470.645000.003040.08657includedK562TARDBP
A5SSSNX11ENSG00000002919.10chr17+461893924618947346189392461894474618993546190022-0.272000.001180.04431shorterK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNX11 is not avaliable on ENCORE database.