SEC24B

General Information

Gene Name       : SEC24B
Gene ID             : ENSG00000138802.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SEC24B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SEC24BENSG00000138802.1116.7416.6416.69ENCSR000AEF
HepG2SEC24BENSG00000138802.1112.5415.4013.97ENCSR985KAT
K562SEC24BENSG00000138802.1117.5418.4017.97ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SEC24B is not avaliable on ENCORE database.



Proteins bound to RNA
  • SEC24B RNA is bound by 17 proteins.  







eCLIP assay for SEC24B is not avaliable on ENCORE database.





17 proteins are bound to SEC24B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr4110461400110461473+3'-UTR5.316318.15847K562PUM2
chr4110354988110355084+5'-UTR,CDS3.522604.79993K562IGF2BP2
chr4110384698110384792+CDS3.350896.28104K562IGF2BP2
chr4110394159110394323+CDS,intron-Proximal6.1747614.32307K562IGF2BP1
chr4110384697110384800+CDS3.9189814.70951HepG2IGF2BP1
chr4110384629110384678+CDS3.103293.34573K562IGF2BP2
chr4110384315110384372+CDS4.490024.93465K562RBM15
chr4110451461110451490+CDS4.630114.37348HepG2BCLAF1
chr4110384487110384581+CDS4.369308.97722K562IGF2BP1
chr4110427466110427552+CDS,intron-Proximal3.757973.37563K562U2AF2
chr4110355084110355154+CDS3.568093.02556K562IGF2BP2
chr4110448465110448523+CDS,intron-Proximal3.871237.00923K562SF3B4
chr4110415787110415897+CDS3.336123.85853K562IGF2BP2
chr4110384629110384697+CDS4.569245.59066HepG2IGF2BP1
chr4110384116110384165+CDS4.378834.93465K562RBM15
chr4110402809110402857+CDS,intron-Distal,intron-Proximal4.069826.44495HepG2U2AF2
chr4110427592110427636+CDS4.073754.32914K562YBX3
chr4110384248110384308+CDS3.592585.12038K562PUM2
chr4110384633110384690+CDS4.994427.30650K562IGF2BP1
chr4110442714110442754+CDS3.416624.91258K562YBX3
chr4110384120110384188+CDS4.451984.24698K562IGF2BP1
chr4110394225110394315+CDS3.631585.14253HepG2GRWD1
chr4110384382110384429+CDS3.901373.28989K562RBM15
chr4110394225110394328+CDS3.8011914.47436K562ZNF622
chr4110448468110448529+CDS,intron-Proximal3.539533.00614K562U2AF2
chr4110384523110384585+CDS3.878833.48187K562RBM15
chr4110451431110451495+CDS,intron-Proximal3.131113.74832K562U2AF2
chr4110394192110394290+CDS4.107275.60238HepG2IGF2BP1
chr4110384690110384799+CDS3.809779.41336K562IGF2BP1
chr4110384262110384315+CDS3.901373.28989K562RBM15
chr4110415853110415989+CDS4.260147.73013K562IGF2BP1
chr4110394208110394318+CDS3.623513.02919K562GRWD1
chr4110384707110384794+CDS3.289336.28688K562UCHL5
chr4110415785110415855+CDS3.288388.95936K562ZNF622
chr4110442674110442714+CDS4.382605.60746K562YBX3
chr4110418734110418871+intron-Distal3.391498.04002K562KHSRP
chr4110355377110355505+intron-Distal4.111153.31153K562GTF2F1
chr4110355320110355421+intron-Distal4.495476.85082HepG2FAM120A
chr4110402976110403028+intron-Distal,intron-Proximal3.995604.77518HepG2U2AF2
chr4110452766110452840+intron-Distal,intron-Proximal4.277343.77802HepG2U2AF2
chr4110355303110355403+intron-Distal3.210093.22046K562AKAP8L
chr4110355310110355415+intron-Distal4.475686.05798HepG2PRPF4
chr4110355327110355419+intron-Distal4.170443.85108HepG2GTF2F1
chr4110423897110423988+intron-Distal3.779033.42844K562KHSRP
chr4110403019110403154+intron-Distal,intron-Proximal3.207306.18396K562KHSRP
chr4110407260110407415+intron-Distal3.004725.99525K562KHSRP
chr4110412263110412346+intron-Distal4.461968.98750HepG2U2AF2
chr4110432806110432866+intron-Distal4.044283.42844K562KHSRP
chr4110424022110424126+intron-Distal4.430233.89294K562KHSRP
chr4110355336110355451+intron-Distal3.285224.05280K562CSTF2T
chr4110355234110355320+intron-Distal,intron-Proximal4.436463.13028HepG2FAM120A
chr4110355317110355425+intron-Distal3.586733.96999HepG2CSTF2T
chr4110412183110412235+intron-Distal3.326884.52210K562KHSRP
chr4110412367110412478+intron-Distal,intron-Proximal4.408863.35169HepG2U2AF2
chr4110448421110448465+intron-Proximal3.541973.26133K562SF3B4
chr4110355181110355234+intron-Proximal3.331733.25786HepG2FAM120A
chr4110451383110451433+intron-Proximal4.287905.16342K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SEC24B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SEC24B is not available on ENCORE database.

  • 72 RBPs can affect the levels of SEC24B.  








The Knockdown/knockout RNA-Seq assay for SEC24B is not available on ENCORE database.





72 RBPs can affect the gene expression of SEC24B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SEC24BENSG00000138802.71204.614201006.620100.259002.716802.11440HepG2ACO1
SEC24BENSG00000138802.7925.864701455.17750-0.652305.709104.97690HepG2AKAP1
SEC24BENSG00000138802.71906.158801566.574000.283003.607102.84090HepG2AUH
SEC24BENSG00000138802.7623.65990867.62610-0.476302.542801.64700HepG2BCCIP
SEC24BENSG00000138802.7565.45200753.95910-0.415102.097901.31070HepG2BCLAF1
SEC24BENSG00000138802.71123.134501389.20120-0.306702.182201.64580HepG2BOP1
SEC24BENSG00000138802.7676.091901140.69410-0.754605.093504.05090HepG2CNOT7
SEC24BENSG00000138802.71070.212501334.59390-0.318504.309403.41770HepG2DAZAP1
SEC24BENSG00000138802.7583.84520896.55200-0.618806.367605.38750HepG2DDX21
SEC24BENSG00000138802.72049.378501448.287200.500702.404701.49270HepG2DDX59
SEC24BENSG00000138802.7765.342601197.41500-0.645705.481004.63720HepG2DDX6
SEC24BENSG00000138802.7726.73000955.95900-0.395505.261704.40740HepG2DNAJC2
SEC24BENSG00000138802.7915.121401151.13040-0.331001.974501.46410HepG2EIF2S1
SEC24BENSG00000138802.7592.11050800.50040-0.435002.424701.57330HepG2EIF3D
SEC24BENSG00000138802.71437.863301798.57620-0.322904.056003.35230HepG2ETF1
SEC24BENSG00000138802.71127.958801532.72790-0.442403.234602.40790HepG2FIP1L1
SEC24BENSG00000138802.71052.40530778.124600.435503.805302.89170HepG2FUBP3
SEC24BENSG00000138802.71117.223201445.81670-0.372002.405601.80460HepG2GPKOW
SEC24BENSG00000138802.7721.76680973.71320-0.432003.687402.95680HepG2HNRNPA1
SEC24BENSG00000138802.7906.001201215.71420-0.424206.693005.68940HepG2HNRNPL
SEC24BENSG00000138802.7881.134401075.91600-0.288102.902602.28290HepG2HNRNPU
SEC24BENSG00000138802.7954.110901099.01240-0.204001.986401.35250HepG2ILF2
SEC24BENSG00000138802.7702.42810920.10680-0.389504.878903.53070HepG2KIF1C
SEC24BENSG00000138802.71552.146902064.86660-0.411802.684501.86670HepG2LARP4
SEC24BENSG00000138802.71010.714901283.95260-0.345202.198801.61170HepG2MAGOH
SEC24BENSG00000138802.7934.789201240.25380-0.407903.854702.90350HepG2MSI2
SEC24BENSG00000138802.71006.921801323.38040-0.394304.347303.39230HepG2NOL12
SEC24BENSG00000138802.7371.09710598.47490-0.689503.724901.87440HepG2PA2G4
SEC24BENSG00000138802.7869.307101064.97160-0.292902.813001.95820HepG2PARN
SEC24BENSG00000138802.7979.928301263.28120-0.366403.101102.47620HepG2PUF60
SEC24BENSG00000138802.71650.656601341.027400.299604.536303.81700HepG2PUM1
SEC24BENSG00000138802.71708.615801340.048700.350403.692702.92330HepG2PUM2
SEC24BENSG00000138802.7789.867801025.29140-0.376404.600403.84390HepG2PUS1
SEC24BENSG00000138802.71006.861201503.28950-0.578309.393408.56690HepG2RBM22
SEC24BENSG00000138802.71124.391301330.27960-0.242602.284301.71780HepG2RECQL
SEC24BENSG00000138802.7829.640901145.72520-0.465702.747201.95060HepG2RPS3A
SEC24BENSG00000138802.7788.30100958.15030-0.281502.740802.09830HepG2SAFB2
SEC24BENSG00000138802.71032.864301211.28680-0.229902.296501.64790HepG2SLBP
SEC24BENSG00000138802.7854.993801117.36440-0.386105.419604.57060HepG2SMN1
SEC24BENSG00000138802.72072.047101697.932400.287204.270703.68770HepG2SRFBP1
SEC24BENSG00000138802.71319.546201134.652000.217702.099101.60460HepG2SRSF9
SEC24BENSG00000138802.71116.864801418.53030-0.344904.843404.06130HepG2SUCLG1
SEC24BENSG00000138802.7623.654701045.45040-0.7453011.3661010.47360HepG2TIAL1
SEC24BENSG00000138802.7877.368801054.79920-0.265702.444101.90720HepG2TRIM56
SEC24BENSG00000138802.71623.114601311.014700.308001.931001.39540HepG2U2AF1
SEC24BENSG00000138802.71051.327701427.37680-0.441207.138806.10400HepG2UPF1
SEC24BENSG00000138802.71137.993501467.11870-0.366504.684703.36010HepG2UTP18
SEC24BENSG00000138802.7756.433801026.24530-0.440102.412001.39840HepG2XPO5
SEC24BENSG00000138802.7419.83590835.96540-0.9936010.599309.19900HepG2XRN2
SEC24BENSG00000138802.72716.708102004.221500.438709.437208.46840K562AGGF1
SEC24BENSG00000138802.72470.812102085.516700.244502.026501.46500K562AKAP8L
SEC24BENSG00000138802.72184.024901821.269700.261901.854301.35560K562AQR
SEC24BENSG00000138802.71156.193601391.72360-0.267502.556301.85960K562EIF2S2
SEC24BENSG00000138802.71343.258301857.42400-0.467602.981402.09880K562FIP1L1
SEC24BENSG00000138802.71543.416901199.328600.363802.574701.49460K562FKBP4
SEC24BENSG00000138802.71335.487401854.63010-0.473805.515104.44520K562GRSF1
SEC24BENSG00000138802.72530.052601564.954400.692903.096901.78460K562HNRNPA2B1
SEC24BENSG00000138802.71094.488201381.38830-0.335902.810102.20860K562HNRNPC
SEC24BENSG00000138802.71683.116802518.45200-0.581403.761502.83850K562HSPD1
SEC24BENSG00000138802.71265.594801556.72990-0.298702.424901.63510K562MAGOH
SEC24BENSG00000138802.73199.655902479.289200.367902.677601.78740K562MBNL1
SEC24BENSG00000138802.72642.106901737.812500.604302.417901.60620K562NAA15
SEC24BENSG00000138802.72047.080801813.783200.174502.098101.43830K562NSUN2
SEC24BENSG00000138802.71042.930501358.79580-0.381703.853302.90050K562POLR2G
SEC24BENSG00000138802.71410.157202108.35920-0.580304.341503.28300K562PPIG
SEC24BENSG00000138802.7835.475901238.56190-0.568005.911604.51010K562PSIP1
SEC24BENSG00000138802.71229.023901512.43030-0.299402.611401.96330K562PTBP1
SEC24BENSG00000138802.73699.766503154.247300.230002.512101.49850K562PUM1
SEC24BENSG00000138802.73265.908502068.021400.659109.903108.92280K562PUS1
SEC24BENSG00000138802.72708.727202015.173300.426606.995706.08140K562RBM15
SEC24BENSG00000138802.71215.089801526.32710-0.329002.369001.37390K562NELFE
SEC24BENSG00000138802.71228.620401727.94030-0.492002.575401.61200K562RPS3
SEC24BENSG00000138802.72053.242701251.052300.714702.502801.38110K562SF1
SEC24BENSG00000138802.73084.378801437.258601.101606.581704.40510K562SNRNP200
SEC24BENSG00000138802.71273.397701668.39810-0.389802.699801.66780K562SRSF4
SEC24BENSG00000138802.71765.860101409.156800.325403.058702.21330K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SEC24B is not available on ENCORE database.





17 RBPs can affect the splicing of SEC24B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESEC24BENSG00000138802.7chr4+110402832110402937110394159110394342110412482110412563-0.508000.000000.00009excludedK562SRSF1
SESEC24BENSG00000138802.7chr4+1104028321104029371103941591103943421104124821104125630.212000.006320.08861includedK562SF3B4
SESEC24BENSG00000138802.7chr4+110402832110402937110394159110394342110412482110412563-0.204000.000230.02463excludedHepG2TBRG4
SESEC24BENSG00000138802.7chr4+1104028321104029371103941591103943421104124821104125630.257000.005870.05302includedK562AQR
SESEC24BENSG00000138802.7chr4+110434902110435012110433112110433239110437683110437796-0.088000.000310.00446excludedK562AQR
SESEC24BENSG00000138802.7chr4+110402832110402937110394159110394342110412482110412563-0.231000.000000.00005excludedK562PUS1
SESEC24BENSG00000138802.7chr4+110402832110402937110394159110394342110412482110412563-0.199000.000680.03436excludedHepG2SFPQ
SESEC24BENSG00000138802.7chr4+110402832110402937110394159110394342110412482110412563-0.295000.000380.05965excludedHepG2HNRNPA1
SESEC24BENSG00000138802.7chr4+1103941651103943421103840561103848001104124821104125630.179000.001520.08568includedK562HNRNPL
SESEC24BENSG00000138802.7chr4+1104028321104029371103941591103943421104124821104125630.235000.000000.00148includedHepG2CDC40
SESEC24BENSG00000138802.7chr4+110402832110402937110394159110394342110412482110412563-0.403000.000000.00001excludedHepG2HNRNPUL1
SESEC24BENSG00000138802.7chr4+110402832110402937110394159110394342110412482110412563-0.472000.000000.00000excludedHepG2SRSF1
SESEC24BENSG00000138802.7chr4+1104028321104029371103941651103943421104124821104125630.244000.000010.00067includedHepG2SF3A3
SESEC24BENSG00000138802.7chr4+110402832110402937110394159110394342110412482110412563-0.277000.000000.00135excludedHepG2RBFOX2
SESEC24BENSG00000138802.7chr4+1104028321104029371103941591103943421104124821104125630.206000.003830.05842includedK562U2AF2
SESEC24BENSG00000138802.7chr4+110402832110402937110394159110394342110412482110412563-0.258000.000130.00733excludedK562HNRNPU
SESEC24BENSG00000138802.7chr4+110402832110402937110394159110394342110412482110412563-0.244000.002200.07090excludedHepG2HNRNPC
SESEC24BENSG00000138802.7chr4+110402832110402937110394159110394342110412482110412563-0.289000.000030.00098excludedK562HNRNPC
A3SSSEC24BENSG00000138802.7chr4+1104274831104276681104274861104276681104157701104160120.350000.000110.05832longerK562EIF3G
A3SSSEC24BENSG00000138802.7chr4+1104274831104276681104274861104276681104157701104160120.380000.002780.05971longerHepG2U2AF2
A3SSSEC24BENSG00000138802.7chr4+1104425451104427821104425751104427821104422721104423280.064000.012760.06515longerK562AQR
A3SSSEC24BENSG00000138802.7chr4+1104464731104466601104465011104466601104458551104460970.060000.001730.01132longerK562AQR
A3SSSEC24BENSG00000138802.7chr4+1104606721104608521104607161104608521104596481104597520.116000.000010.00014longerK562AQR
A3SSSEC24BENSG00000138802.7chr4+1103941451103943421103941591103943421103840561103848000.084000.000290.00228longerK562AQR
A5SSSEC24BENSG00000138802.7chr4+1104537941104540001104537941104538991104547481104548410.053000.000000.00001longerK562AQR
MXESEC24BENSG00000138802.7chr4+1103941591103943421104028321104029371103840561103848001104124821104125630.115000.000620.014011includedK562PUS1
MXESEC24BENSG00000138802.7chr4+1103941651103943421104028321104029371103840561103848001104124821104125630.216000.000070.002431includedK562PUS1
MXESEC24BENSG00000138802.7chr4+1103941591103943421104124821104125631103840561103848001104157701104160120.126000.000630.084191includedK562UTP3
MXESEC24BENSG00000138802.7chr4+1103941451103943421104124821104125631103840561103848001104157701104160120.110000.000320.003391includedK562AQR
MXESEC24BENSG00000138802.7chr4+1103941271103943421104124821104125631103840561103848001104157701104160120.072000.003620.027471includedK562AQR
MXESEC24BENSG00000138802.7chr4+1103840561103848001103941651103943421103549681103551581104124821104125630.209000.001720.053001includedHepG2SF3A3
MXESEC24BENSG00000138802.7chr4+110394165110394342110402832110402937110384056110384800110412482110412563-0.232000.000670.070602includedHepG2CDC40
MXESEC24BENSG00000138802.7chr4+1103941591103943421104028321104029371103840561103848001104124821104125630.330000.000000.000021includedHepG2HNRNPUL1
MXESEC24BENSG00000138802.7chr4+1103941591103943421104028321104029371103840561103848001104124821104125630.105000.001490.027601includedK562HNRNPC
MXESEC24BENSG00000138802.7chr4+1103941451103943421104028321104029371103840561103848001104124821104125630.260000.002270.038911includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SEC24B is not avaliable on ENCORE database.