HGFAC

General Information

Gene Name : HGFAC
Gene ID : ENSG00000109758.8
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: HGFAC)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	HGFAC	ENSG00000109758.8	0.00	0.00	0.00	ENCSR000AEF
HepG2	HGFAC	ENSG00000109758.8	12.80	0.44	6.62	ENCSR985KAT
K562	HGFAC	ENSG00000109758.8	0.00	0.00	0.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for HGFAC is not avaliable on ENCORE database.

Proteins bound to RNA

HGFAC RNA is bound by 16 proteins.

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eCLIP assay for HGFAC is not avaliable on ENCORE database.

16 proteins are bound to HGFAC RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	3447223	3447325	+	intron-Distal	3.40407	19.47689	HepG2	PRPF4
chr4	3447233	3447316	+	intron-Distal	4.09838	19.32408	HepG2	PPIG
chr4	3447229	3447330	+	intron-Distal	3.81907	16.94085	HepG2	BUD13
chr4	3449953	3450003	+	CDS	3.92859	16.47827	HepG2	PABPN1
chr4	3447689	3447770	+	CDS,intron-Proximal	4.10094	16.40525	HepG2	SF3B4
chr4	3447793	3447839	+	CDS	4.33866	12.40018	HepG2	PPIG
chr4	3450963	3450991	+	CDS,intron-Proximal	3.60987	12.37971	HepG2	PABPN1
chr4	3446670	3446705	+	CDS	5.03812	11.99167	HepG2	PPIG
chr4	3447242	3447304	+	intron-Distal	3.47869	11.49991	HepG2	SDAD1
chr4	3446056	3446114	+	CDS	3.13307	10.58565	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 36 entries

eCLIP assay for HGFAC is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for HGFAC is not available on ENCORE database.
94 RBPs can affect the levels of HGFAC.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for HGFAC is not available on ENCORE database.

94 RBPs can affect the gene expression of HGFAC :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
HGFAC	ENSG00000109758.4	1539.16650	254.51410	2.59620	158.83340	155.60040	HepG2	SLBP
HGFAC	ENSG00000109758.4	3316.34730	919.13590	1.85110	119.06550	116.25060	HepG2	ETF1
HGFAC	ENSG00000109758.4	222.11100	1159.67390	-2.38440	95.98740	93.26420	HepG2	UTP3
HGFAC	ENSG00000109758.4	1078.40430	101.60350	3.40780	95.59510	92.89210	HepG2	SAFB2
HGFAC	ENSG00000109758.4	2057.06490	265.44610	2.95400	92.19230	89.33550	HepG2	PUF60
HGFAC	ENSG00000109758.4	842.42910	101.76430	3.04920	68.55590	65.15140	HepG2	PPIL4
HGFAC	ENSG00000109758.4	137.47340	768.22670	-2.48240	66.39080	64.52330	HepG2	RBM22
HGFAC	ENSG00000109758.4	1338.91600	164.64100	3.02360	67.62230	63.84510	HepG2	RPS3A
HGFAC	ENSG00000109758.4	710.74270	111.86040	2.66750	54.70010	52.61990	HepG2	TRIM56
HGFAC	ENSG00000109758.4	698.06170	120.60720	2.53290	52.48920	50.08860	HepG2	TARDBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 94 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for HGFAC is not available on ENCORE database.

10 RBPs can affect the splicing of HGFAC :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A5SS	HGFAC	ENSG00000109758.4	chr4	+	3446991	3447623	3446991	3447077	3447768	3448021	0.39500	0.00000	0.00031	longer	HepG2	HNRNPK
A5SS	HGFAC	ENSG00000109758.4	chr4	+	3446991	3447623	3446991	3447223	3447768	3448021	0.14900	0.00002	0.01238	longer	HepG2	TBRG4
SE	HGFAC	ENSG00000109758.4	chr4	+	3445067	3445147	3444776	3444873	3445765	3445888	0.21600	0.00004	0.02220	included	HepG2	XRN2
A5SS	HGFAC	ENSG00000109758.4	chr4	+	3446991	3447623	3446991	3447077	3447768	3448021	0.33100	0.00004	0.00932	longer	HepG2	MATR3
A3SS	HGFAC	ENSG00000109758.4	chr4	+	3449516	3449762	3449621	3449762	3449218	3449358	0.09200	0.00007	0.03425	longer	HepG2	HNRNPUL1
A5SS	HGFAC	ENSG00000109758.4	chr4	+	3446991	3447623	3446991	3447077	3447768	3448021	0.29000	0.00014	0.05184	longer	HepG2	KHSRP
SE	HGFAC	ENSG00000109758.4	chr4	+	3445067	3445147	3444776	3444873	3445765	3445888	0.20700	0.00020	0.07161	included	HepG2	BCCIP
SE	HGFAC	ENSG00000109758.4	chr4	+	3445067	3445147	3444776	3444873	3445765	3445888	0.19400	0.00057	0.09147	included	HepG2	DDX55
A3SS	HGFAC	ENSG00000109758.4	chr4	+	3449516	3449762	3449621	3449762	3449218	3449358	0.07200	0.00103	0.02734	longer	HepG2	U2AF2
SE	HGFAC	ENSG00000109758.4	chr4	+	3445067	3445147	3444776	3444873	3445765	3445888	-0.15600	0.00165	0.08796	excluded	HepG2	SRSF9

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

HGFAC

General Information

Functions

Localization

Domains (AlphaFold: HGFAC)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for HGFAC is not avaliable on ENCORE database.

16 proteins are bound to HGFAC RNA:

eCLIP assay for HGFAC is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for HGFAC is not available on ENCORE database.

94 RBPs can affect the gene expression of HGFAC :

The Knockdown/knockout RNA-Seq assay for HGFAC is not available on ENCORE database.

10 RBPs can affect the splicing of HGFAC :

The Knockdown/knockout RNA-Seq assay for HGFAC is not avaliable on ENCORE database.