HS1BP3

General Information

Gene Name       : HS1BP3
Gene ID             : ENSG00000118960.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HS1BP3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HS1BP3ENSG00000118960.122.392.612.50ENCSR000AEF
HepG2HS1BP3ENSG00000118960.1215.7410.7413.24ENCSR985KAT
K562HS1BP3ENSG00000118960.124.994.004.50ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HS1BP3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HS1BP3 RNA is bound by 22 proteins.  







eCLIP assay for HS1BP3 is not avaliable on ENCORE database.





22 proteins are bound to HS1BP3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr22081843920818515-3'-UTR,intron-Distal4.548237.50817K562UPF1
chr22081840420818439-3'-UTR,intron-Distal3.330183.06830K562UPF1
chr22081828320818365-3'-UTR,intron-Distal4.128323.08342HepG2AKAP1
chr22082202720822086-3'-UTR,CDS,intron-Distal4.655223.84248K562LSM11
chr22081812720818216-3'-UTR,intron-Distal5.7398912.42760K562UPF1
chr22081767320817719-3'-UTR,intron-Distal3.979543.35877HepG2UPF1
chr22081768520817753-3'-UTR,intron-Distal3.947416.14808K562UPF1
chr22081783320817885-3'-UTR,intron-Distal4.486235.17229HepG2UPF1
chr22081814320818215-3'-UTR,intron-Distal4.4764511.02367HepG2UPF1
chr22081795220818003-3'-UTR,intron-Distal4.191534.49605HepG2UPF1
chr22081821520818263-3'-UTR,intron-Distal4.421245.14974HepG2UPF1
chr22079239920792488-3'-UTR,intron-Distal,intron-Proximal3.628324.77155HepG2AKAP1
chr22081786020817977-3'-UTR,intron-Distal4.6947910.60336K562UPF1
chr22081841320818507-3'-UTR,intron-Distal4.979547.39978HepG2UPF1
chr22081833220818381-3'-UTR,intron-Distal4.267534.68979HepG2UPF1
chr22079239920792546-3'-UTR,intron-Distal,intron-Proximal4.9252815.76078HepG2UPF1
chr22081813920818212-3'-UTR,intron-Distal4.992838.04861HepG2AKAP1
chr22084503220845127-CDS,intron-Distal,intron-Proximal3.445986.29405HepG2PRPF8
chr22079279520792802-intron-Distal4.7180527.59166HepG2PRPF4
chr22078615320786233-intron-Distal3.186996.73831HepG2PABPN1
chr22079080720790893-intron-Distal5.2299313.92882HepG2UPF1
chr22078781720787834-intron-Distal3.8139513.07070HepG2XPO5
chr22079298120793010-intron-Distal3.400164.19392HepG2GTF2F1
chr22078588520786003-intron-Distal4.547105.84425HepG2CSTF2
chr22078615120786206-intron-Distal5.1113519.73566HepG2DDX55
chr22079296820793026-intron-Distal3.758796.46072HepG2EIF3H
chr22078614020786201-intron-Distal3.470997.99752HepG2ZC3H11A
chr22079296620793028-intron-Distal3.481076.88189HepG2DDX3X
chr22079206720792090-intron-Distal3.386684.36184HepG2PRPF4
chr22079090920790959-intron-Distal3.570707.40079HepG2UPF1
chr22079218020792274-intron-Distal3.239966.60144HepG2UPF1
chr22078631420786376-intron-Distal3.560396.09716HepG2ZC3H11A
chr22078732020787356-intron-Distal3.997243.64119HepG2UPF1
chr22079282020792867-intron-Distal4.5847228.68248HepG2PRPF4
chr22079294320793070-intron-Distal6.1088417.65078HepG2NCBP2
chr22079296020793040-intron-Distal3.5568110.47466HepG2PRPF4
chr22078811020788178-intron-Distal3.6401232.85446HepG2UPF1
chr22078738420787442-intron-Distal4.184396.75470HepG2UPF1
chr22078587720785981-intron-Distal4.668485.41529HepG2CSTF2T
chr22078608320786144-intron-Distal3.865374.25147HepG2LSM11
chr22078606020786140-intron-Distal3.301654.70071HepG2ZC3H11A
chr22079275820792854-intron-Distal3.184628.34342HepG2FAM120A
chr22078777820787817-intron-Distal4.4561213.13695HepG2XPO5
chr22079021720790293-intron-Distal4.4880812.05831HepG2UPF1
chr22078783920787868-intron-Distal3.043806.09219HepG2UPF1
chr22079204920792089-intron-Distal3.763383.03048HepG2GTF2F1
chr22079105720791106-intron-Distal5.2093012.81947HepG2XPO5
chr22078630720786381-intron-Distal3.213098.26484HepG2DDX55
chr22079280220792820-intron-Distal5.3193038.74437HepG2PRPF4
chr22078639420786444-intron-Distal4.122717.14815HepG2DDX55
chr22079078420790853-intron-Distal3.277654.63794HepG2AKAP1
chr22078817820788245-intron-Distal4.1540736.73450HepG2UPF1
chr22079276020792840-intron-Distal4.1539510.39320HepG2PCBP2
chr22079092220790948-intron-Distal4.235383.45716HepG2AKAP1
chr22079098520791001-intron-Distal3.680595.09017HepG2UPF1
chr22079270020792865-intron-Distal3.6426810.68514HepG2UPF1
chr22078644320786506-intron-Distal4.7384815.00881HepG2FUBP3
chr22079097820791110-intron-Distal3.378835.63071HepG2AQR
chr22078608820786138-intron-Distal3.531883.44847HepG2PABPN1
chr22078758220787634-intron-Distal4.102765.29525HepG2RBFOX2
chr22078642020786506-intron-Distal3.013673.62991HepG2KHSRP
chr22078972820789755-intron-Distal3.796974.27354HepG2UPF1
chr22078639020786443-intron-Distal4.2956813.07323HepG2FUBP3
chr22078716320787206-intron-Distal4.171203.64119HepG2UPF1
chr22079117520791210-intron-Distal3.865273.24593HepG2XPO5
chr22079267820792748-intron-Distal3.517897.46020HepG2PRPF4
chr22079288920792932-intron-Distal3.483037.67822HepG2PRPF4
chr22078650620786562-intron-Distal4.988516.28020HepG2FUBP3
chr22079275320792859-intron-Distal4.1743827.08616HepG2GTF2F1
chr22079275820792828-intron-Distal3.3786220.70580HepG2DDX3X
chr22078922520789256-intron-Distal3.880014.81659HepG2UPF1
chr22079277920792795-intron-Distal4.7809225.94800HepG2PRPF4
chr22078641320786501-intron-Distal4.040323.61881HepG2TIAL1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HS1BP3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HS1BP3 is not available on ENCORE database.

  • 86 RBPs can affect the levels of HS1BP3.  








The Knockdown/knockout RNA-Seq assay for HS1BP3 is not available on ENCORE database.





86 RBPs can affect the gene expression of HS1BP3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HS1BP3ENSG00000118960.8692.79810472.089400.553305.218604.43610HepG2ACO1
HS1BP3ENSG00000118960.81307.11580950.837000.459003.017002.46420HepG2AKAP1
HS1BP3ENSG00000118960.8668.04910474.185700.494403.911803.01230HepG2AKAP8L
HS1BP3ENSG00000118960.8466.50130872.95220-0.9040017.0464015.60680HepG2AUH
HS1BP3ENSG00000118960.8343.93000511.00700-0.571203.948503.24620HepG2BOP1
HS1BP3ENSG00000118960.8896.83530636.162800.495302.929801.92540HepG2CCAR1
HS1BP3ENSG00000118960.81106.98490747.426400.566505.039904.01380HepG2CIRBP
HS1BP3ENSG00000118960.8648.96610471.840500.459703.581502.84150HepG2CKAP4
HS1BP3ENSG00000118960.8340.72000469.14340-0.461402.460301.80660HepG2CPSF6
HS1BP3ENSG00000118960.8977.48490570.791500.7760011.4559010.32340HepG2CELF1
HS1BP3ENSG00000118960.8789.86630613.763400.363803.707302.86970HepG2DAZAP1
HS1BP3ENSG00000118960.8559.63070395.252200.501603.493202.73910HepG2DDX21
HS1BP3ENSG00000118960.81263.73700910.731700.472503.590502.88880HepG2DDX3X
HS1BP3ENSG00000118960.8328.21820532.74310-0.698803.144702.10260HepG2DDX59
HS1BP3ENSG00000118960.81079.82740782.568700.464403.043602.39810HepG2DDX6
HS1BP3ENSG00000118960.8530.12350410.954000.367302.588501.95420HepG2DNAJC2
HS1BP3ENSG00000118960.8948.88960752.072600.335301.902501.40000HepG2EIF2S1
HS1BP3ENSG00000118960.8417.38630580.02990-0.474703.193302.32220HepG2EIF4G2
HS1BP3ENSG00000118960.8563.334501002.26970-0.8312016.1224014.86810HepG2ETF1
HS1BP3ENSG00000118960.8253.14890380.78860-0.589002.649601.40660HepG2FKBP4
HS1BP3ENSG00000118960.8429.23620777.93140-0.857908.448807.31960HepG2G3BP1
HS1BP3ENSG00000118960.8534.77240788.13890-0.559504.568003.68960HepG2HNRNPK
HS1BP3ENSG00000118960.8706.09360559.098200.336703.066202.35850HepG2HNRNPL
HS1BP3ENSG00000118960.8825.43260662.296800.317602.375101.70220HepG2IGF2BP1
HS1BP3ENSG00000118960.8908.79190672.105100.435202.412201.64050HepG2LARP4
HS1BP3ENSG00000118960.81215.78360843.734000.526903.919603.18030HepG2MATR3
HS1BP3ENSG00000118960.8845.36990608.605300.474004.735503.73840HepG2NOL12
HS1BP3ENSG00000118960.8758.91150420.385900.852103.995302.66350HepG2NONO
HS1BP3ENSG00000118960.8662.72770826.88590-0.319303.022202.39210HepG2PCBP1
HS1BP3ENSG00000118960.8445.06850556.65680-0.322802.180001.48630HepG2PRPF4
HS1BP3ENSG00000118960.81138.17930580.960800.9701015.8419014.57420HepG2PUF60
HS1BP3ENSG00000118960.8841.67870616.708300.448605.737104.94650HepG2PUM1
HS1BP3ENSG00000118960.8940.16490616.262300.609307.202106.13770HepG2PUM2
HS1BP3ENSG00000118960.8769.56880480.832300.678407.568606.63320HepG2PUS1
HS1BP3ENSG00000118960.8505.83980911.28970-0.8492013.3128012.09070HepG2QKI
HS1BP3ENSG00000118960.81078.61580837.711200.364602.657002.14670HepG2RBM22
HS1BP3ENSG00000118960.8611.44630827.01830-0.435703.746802.97030HepG2RBM25
HS1BP3ENSG00000118960.8642.94940872.03530-0.439704.972904.17670HepG2RECQL
HS1BP3ENSG00000118960.81076.93470724.501700.571805.975905.02840HepG2RPLP0
HS1BP3ENSG00000118960.8610.07730387.738500.653805.809904.95760HepG2RPS19
HS1BP3ENSG00000118960.8672.00860453.329500.567803.801902.53100HepG2RPS5
HS1BP3ENSG00000118960.8645.87910876.02620-0.439704.948804.19450HepG2SF3B4
HS1BP3ENSG00000118960.8684.26940557.035900.296702.403501.74340HepG2SLBP
HS1BP3ENSG00000118960.8657.60130480.220500.453403.919203.17620HepG2SMN1
HS1BP3ENSG00000118960.81227.84860946.162600.375904.702004.09920HepG2SRFBP1
HS1BP3ENSG00000118960.8646.80440914.34920-0.499405.889705.26440HepG2SRSF1
HS1BP3ENSG00000118960.8666.60330821.49080-0.301402.682502.17480HepG2SSB
HS1BP3ENSG00000118960.8911.96920652.354900.483206.336005.46500HepG2SUCLG1
HS1BP3ENSG00000118960.8611.31920440.380000.473103.652102.58240HepG2SUPT6H
HS1BP3ENSG00000118960.8328.80660821.76270-1.3215014.3174013.18820HepG2TAF15
HS1BP3ENSG00000118960.8550.53020755.18350-0.456003.012302.14500HepG2TIA1
HS1BP3ENSG00000118960.8766.29170449.251500.7703010.016809.16840HepG2TIAL1
HS1BP3ENSG00000118960.8646.97870453.383200.512903.834603.19330HepG2TRIM56
HS1BP3ENSG00000118960.8762.20360557.837400.450203.188202.51660HepG2U2AF1
HS1BP3ENSG00000118960.8693.16340356.279900.960102.237201.36030HepG2U2AF2
HS1BP3ENSG00000118960.8971.01950600.747800.692605.790504.55000HepG2UBE2L3
HS1BP3ENSG00000118960.8439.51350268.978500.708304.445303.48230HepG2UCHL5
HS1BP3ENSG00000118960.8561.22300452.492000.310602.170401.62640HepG2UTP3
HS1BP3ENSG00000118960.8597.59930431.717800.469002.309001.34310HepG2XRCC6
HS1BP3ENSG00000118960.8323.22910549.33810-0.765109.813608.67860HepG2ZC3H8
HS1BP3ENSG00000118960.8846.90110515.458300.7162013.1738012.20420HepG2ZNF622
HS1BP3ENSG00000118960.8206.70690143.490800.526502.483801.57750K562BCLAF1
HS1BP3ENSG00000118960.8179.18430113.896000.653602.693501.65650K562CCAR1
HS1BP3ENSG00000118960.8330.58350203.423700.700403.930202.16260K562CKAP4
HS1BP3ENSG00000118960.8328.57120186.591300.816203.684302.42650K562CNOT7
HS1BP3ENSG00000118960.8233.23690133.643900.803304.408303.42030K562CPSF6
HS1BP3ENSG00000118960.8168.47680108.859100.630002.532401.52670K562CSTF2
HS1BP3ENSG00000118960.8224.92640157.137500.517302.415301.73560K562EIF2S2
HS1BP3ENSG00000118960.8282.65690200.263000.497102.448701.67640K562EIF4A3
HS1BP3ENSG00000118960.8228.45100122.163300.903005.246204.05280K562FIP1L1
HS1BP3ENSG00000118960.847.93820101.76980-1.086103.503802.68860K562G3BP2
HS1BP3ENSG00000118960.8194.89990127.584600.611202.393701.65280K562GPKOW
HS1BP3ENSG00000118960.8400.58580209.386100.935807.408106.15680K562GRSF1
HS1BP3ENSG00000118960.8320.50240212.755200.591003.712102.46510K562HNRNPA1
HS1BP3ENSG00000118960.8268.27840165.633700.695603.612302.70760K562HSPD1
HS1BP3ENSG00000118960.8228.89030137.859300.731404.196902.66020K562IGF2BP3
HS1BP3ENSG00000118960.8289.72350185.765400.641104.023503.06420K562MTPAP
HS1BP3ENSG00000118960.8293.12830206.429400.505802.941502.17620K562NSUN2
HS1BP3ENSG00000118960.8393.23140197.517900.993304.308603.00060K562PABPN1
HS1BP3ENSG00000118960.8227.36340138.673000.713203.674202.70810K562PPIG
HS1BP3ENSG00000118960.8471.46320234.824701.005504.402102.40530K562PPP1R8
HS1BP3ENSG00000118960.8210.74860136.247100.629202.346501.51960K562PSIP1
HS1BP3ENSG00000118960.8477.50020298.347800.678404.469103.43730K562PUF60
HS1BP3ENSG00000118960.8465.43200310.924900.581903.853602.71690K562PUM2
HS1BP3ENSG00000118960.8191.08630124.311900.620202.033701.33930K562RPS19
HS1BP3ENSG00000118960.8336.50190180.633900.897402.875201.63970K562SF1
HS1BP3ENSG00000118960.8193.72730117.873800.716703.018801.93540K562SRFBP1
HS1BP3ENSG00000118960.8234.61450128.119400.872705.238103.70920K562SRSF5
HS1BP3ENSG00000118960.8471.84950248.140000.927103.840702.04800K562SUPT6H
HS1BP3ENSG00000118960.8256.69020137.203300.903605.755404.71250K562TARDBP
HS1BP3ENSG00000118960.8263.17610132.359000.991507.071505.66480K562TIA1
HS1BP3ENSG00000118960.8264.44060131.042201.012806.258204.79450K562TIAL1
HS1BP3ENSG00000118960.8249.47500129.981200.940502.706301.62850K562TRA2A
HS1BP3ENSG00000118960.8222.19980139.259400.674003.106102.09100K562TRIM56
HS1BP3ENSG00000118960.8222.97930142.930800.641502.912701.48220K562TRIP6
HS1BP3ENSG00000118960.8237.93410125.059900.927804.771303.39450K562UCHL5
HS1BP3ENSG00000118960.8370.96650218.879300.761104.089803.23250K562UPF1
HS1BP3ENSG00000118960.8287.99150190.993900.592402.833601.61910K562UTP3
HS1BP3ENSG00000118960.8291.57520187.291600.638503.749002.73010K562WDR3
HS1BP3ENSG00000118960.8359.08150246.222000.544303.415202.44040K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HS1BP3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of HS1BP3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for HS1BP3 is not avaliable on ENCORE database.