RBAK-RBAKDN

General Information

Gene Name : RBAK-RBAKDN
Gene ID : ENSG00000272968.5
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RBAK-RBAKDN)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RBAK-RBAKDN	ENSG00000272968.5	0.13	0.11	0.12	ENCSR000AEF
HepG2	RBAK-RBAKDN	ENSG00000272968.5	0.10	0.16	0.13	ENCSR985KAT
K562	RBAK-RBAKDN	ENSG00000272968.5	0.20	0.29	0.24	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RBAK-RBAKDN is not avaliable on ENCORE database.

Proteins bound to RNA

RBAK-RBAKDN RNA is bound by 25 proteins.

eCLIP assay for RBAK-RBAKDN is not avaliable on ENCORE database.

25 proteins are bound to RBAK-RBAKDN RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	5085529	5085602	+	5'-UTR,intron-Distal,intron-Proximal	3.47143	4.68720	K562	XRCC6
chr7	5024488	5024555	+	5'-UTR,intron-Distal,intron-Proximal	4.86059	4.65563	K562	AQR
chr7	5097014	5097086	+	CDS,intron-Proximal	4.92273	3.70131	HepG2	PRPF8
chr7	5096940	5097047	+	CDS	3.70395	4.20387	K562	ZNF622
chr7	5097031	5097085	+	CDS,intron-Proximal	4.20443	3.49003	K562	PRPF8
chr7	5103329	5103440	+	CDS,intron-Distal,intron-Proximal	3.80062	3.87469	HepG2	BCLAF1
chr7	5097334	5097400	+	CDS	3.60313	4.24220	K562	ZNF622
chr7	5097361	5097419	+	CDS,intron-Proximal	4.63011	4.70478	HepG2	BCLAF1
chr7	5097313	5097359	+	CDS,intron-Proximal	3.41674	4.06757	K562	UCHL5
chr7	5097346	5097437	+	CDS,intron-Proximal	3.81522	6.65114	HepG2	PRPF8
chr7	5035234	5035349	+	intron-Distal,intron-Proximal	3.11838	3.00054	HepG2	PRPF4
chr7	5095214	5095288	+	intron-Distal	3.74974	3.25538	K562	KHSRP
chr7	5037458	5037595	+	intron-Distal	4.71889	6.07826	K562	IGF2BP2
chr7	5023425	5023523	+	intron-Distal,intron-Proximal	3.03901	5.36888	K562	KHSRP
chr7	5036434	5036504	+	intron-Distal	4.28739	3.48187	K562	RBM15
chr7	5085732	5085813	+	5'-UTR,intron-Distal,intron-Proximal	3.58173	3.56577	HepG2	XRN2
chr7	5036677	5036798	+	intron-Distal	3.18517	3.78791	K562	RBM15
chr7	5103749	5103831	+	CDS,intron-Distal	3.99675	3.04123	K562	LIN28B
chr7	5066800	5066892	+	intron-Distal	4.96184	4.90095	K562	PTBP1
chr7	5091547	5091683	+	intron-Distal	3.90745	6.02877	HepG2	SUGP2
chr7	5085743	5085817	+	5'-UTR,intron-Distal,intron-Proximal	4.41637	4.42691	HepG2	GTF2F1
chr7	5083986	5084064	+	intron-Distal	4.52460	3.42734	K562	PTBP1
chr7	5097577	5097653	+	intron-Distal	3.74023	3.37631	K562	HNRNPL
chr7	5036863	5036916	+	intron-Distal	4.10969	5.99105	K562	UPF1
chr7	5085718	5085822	+	5'-UTR,intron-Distal,intron-Proximal	3.82384	8.97091	HepG2	PRPF4
chr7	5085606	5085715	+	5'-UTR,intron-Distal,intron-Proximal	3.74784	4.98031	HepG2	PRPF4
chr7	5093119	5093217	+	intron-Distal	4.34602	4.78128	HepG2	SUGP2
chr7	5037325	5037367	+	intron-Distal	4.58877	6.92189	HepG2	PCBP2
chr7	5037389	5037440	+	intron-Distal	5.31851	8.40676	K562	UPF1
chr7	5037402	5037476	+	intron-Distal	3.93933	3.66655	K562	YBX3
chr7	5098906	5098975	+	intron-Distal	4.68556	5.05386	K562	PTBP1
chr7	5037332	5037378	+	intron-Distal	3.14669	5.09741	K562	UPF1
chr7	5108258	5108327	+	3'-UTR,intron-Distal	3.07037	3.27418	HepG2	HLTF
chr7	5107339	5107396	+	3'-UTR,intron-Distal	4.02618	3.86679	K562	SAFB2
chr7	5105507	5105568	+	3'-UTR,intron-Distal	3.21361	3.67498	K562	SAFB2
chr7	5031567	5031633	+	intron-Distal	4.54332	11.61021	K562	TARDBP
chr7	5028653	5028729	+	intron-Distal,intron-Proximal	4.49914	4.64001	HepG2	U2AF2
chr7	5083981	5084080	+	intron-Distal	3.76958	4.32634	HepG2	PTBP1
chr7	5036857	5036916	+	intron-Distal	4.05564	3.73331	K562	RBM15
chr7	5037662	5037744	+	intron-Distal	3.94449	7.71860	K562	UPF1
chr7	5023411	5023525	+	intron-Distal,intron-Proximal	4.19963	8.29266	K562	AQR
chr7	5104965	5105034	+	CDS,intron-Distal	4.16804	4.51328	K562	SAFB2
chr7	5104491	5104534	+	CDS,intron-Distal	3.16109	3.12941	K562	UCHL5
chr7	5085724	5085837	+	5'-UTR,intron-Distal,intron-Proximal	3.72611	5.55508	K562	BUD13
chr7	5087255	5087321	+	intron-Distal	3.72046	3.03357	HepG2	HNRNPC
chr7	5036812	5036840	+	intron-Distal	4.14169	3.54010	K562	UPF1
chr7	5037440	5037504	+	intron-Distal	3.27321	7.66288	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RBAK-RBAKDN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RBAK-RBAKDN is not available on ENCORE database.
7 RBPs can affect the levels of RBAK-RBAKDN.

The Knockdown/knockout RNA-Seq assay for RBAK-RBAKDN is not available on ENCORE database.

7 RBPs can affect the gene expression of RBAK-RBAKDN :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RBAK-RBAKDN	ENSG00000272968.1	9.41810	0.00000	99999.99990	2.81740	2.12520	HepG2	CPSF6
RBAK-RBAKDN	ENSG00000272968.1	21.42520	2.50270	3.09770	3.03770	2.39320	HepG2	DDX6
RBAK-RBAKDN	ENSG00000272968.1	17.64940	2.25750	2.96670	2.76360	1.44750	HepG2	ILF3
RBAK-RBAKDN	ENSG00000272968.1	16.20180	2.11390	2.93810	2.60970	1.75330	HepG2	PABPC1
RBAK-RBAKDN	ENSG00000272968.1	0.86110	13.38890	-3.95870	2.90870	1.54650	HepG2	SUGP2
RBAK-RBAKDN	ENSG00000272968.1	9.33290	0.00000	99999.99990	2.61140	1.68140	K562	BCLAF1
RBAK-RBAKDN	ENSG00000272968.1	24.37750	4.14280	2.55680	3.30410	2.41090	K562	EIF4A3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RBAK-RBAKDN is not available on ENCORE database.

6 RBPs can affect the splicing of RBAK-RBAKDN :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RBAK-RBAKDN	ENSG00000272968.1	chr7	+	5026197	5026262			5024540	5024706	5028693	5028808	-0.09600	0.00047	0.06191	excluded	K562	RBM22
SE	RBAK-RBAKDN	ENSG00000272968.1	chr7	+	5026197	5026262			5024540	5024706	5028693	5028808	-0.07200	0.00157	0.05698	excluded	K562	PTBP1
A3SS	RBAK-RBAKDN	ENSG00000272968.1	chr7	+	5024540	5024706			5024592	5024706	5023348	5023404	-0.30700	0.00000	0.00012	shorter	HepG2	U2AF2
A3SS	RBAK-RBAKDN	ENSG00000272968.1	chr7	+	5024540	5024761			5024592	5024761	5023348	5023404	-0.21700	0.00009	0.06508	shorter	K562	EIF4G2
A3SS	RBAK-RBAKDN	ENSG00000272968.1	chr7	+	5024540	5024706			5024592	5024706	5023348	5023404	-0.26800	0.00016	0.03961	shorter	HepG2	SFPQ
A3SS	RBAK-RBAKDN	ENSG00000272968.1	chr7	+	5024540	5024761			5024592	5024761	5023348	5023404	-0.31500	0.00003	0.00172	shorter	HepG2	U2AF1
MXE	RBAK-RBAKDN	ENSG00000272968.1	chr7	+	5028664	5028808	5087663	5087722	5024540	5024706	5096925	5097052	0.28100	0.00095	0.03360	1included	K562	PTBP1
MXE	RBAK-RBAKDN	ENSG00000272968.1	chr7	+	5028693	5028808	5087663	5087722	5024540	5024706	5096925	5097052	0.25500	0.00001	0.00073	1included	K562	PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RBAK-RBAKDN

General Information

Functions

Localization

Domains (AlphaFold: RBAK-RBAKDN)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RBAK-RBAKDN is not avaliable on ENCORE database.

25 proteins are bound to RBAK-RBAKDN RNA:

eCLIP assay for RBAK-RBAKDN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RBAK-RBAKDN is not available on ENCORE database.

7 RBPs can affect the gene expression of RBAK-RBAKDN :

The Knockdown/knockout RNA-Seq assay for RBAK-RBAKDN is not available on ENCORE database.

6 RBPs can affect the splicing of RBAK-RBAKDN :

The Knockdown/knockout RNA-Seq assay for RBAK-RBAKDN is not avaliable on ENCORE database.