RP11-216L13.17

General Information

Gene Name : RP11-216L13.17
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-216L13.17)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-216L13.17 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-216L13.17 RNA is bound by 23 proteins.

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eCLIP assay for RP11-216L13.17 is not avaliable on ENCORE database.

23 proteins are bound to RP11-216L13.17 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	139686012	139686097	+	intron-Distal,intron-Proximal	4.04383	45.81602	HepG2	EFTUD2
chr9	139694886	139694931	+	CDS	5.34549	26.51935	HepG2	GRWD1
chr9	139694931	139694945	+	CDS	4.64378	20.33076	HepG2	GRWD1
chr9	139685848	139685915	+	CDS,intron-Proximal	5.61161	18.20873	HepG2	AQR
chr9	139686030	139686092	+	intron-Distal,intron-Proximal	4.18881	16.86925	HepG2	PRPF4
chr9	139685825	139685878	+	CDS,intron-Proximal	5.16733	16.67528	HepG2	DDX3X
chr9	139687320	139687391	+	3'-UTR,intron-Distal	3.90506	15.93007	HepG2	LARP4
chr9	139685943	139685994	+	intron-Distal,intron-Proximal	3.40818	14.83230	HepG2	EFTUD2
chr9	139687606	139687674	+	3'-UTR,intron-Distal	3.54026	13.97531	HepG2	LARP4
chr9	139686468	139686482	+	CDS	4.83970	13.57407	HepG2	LARP4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 62 entries

eCLIP assay for RP11-216L13.17 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-216L13.17 is not available on ENCORE database.
30 RBPs can affect the levels of RP11-216L13.17.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RP11-216L13.17 is not available on ENCORE database.

30 RBPs can affect the gene expression of RP11-216L13.17 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-216L13.17	ENSG00000272896.1	71.90450	10.35840	2.79520	9.20990	8.02540	HepG2	CPSF6
RP11-216L13.17	ENSG00000272896.1	0.00000	19.14220	-99999.99999	6.45200	5.32660	HepG2	AKAP8L
RP11-216L13.17	ENSG00000272896.1	52.10320	12.54490	2.05420	5.63380	4.70120	HepG2	HNRNPL
RP11-216L13.17	ENSG00000272896.1	34.49930	6.16480	2.48430	5.00100	4.28780	HepG2	TRIM56
RP11-216L13.17	ENSG00000272896.1	0.00000	14.60230	-99999.99999	4.11070	3.51120	HepG2	RBM22
RP11-216L13.17	ENSG00000272896.1	26.98660	2.44280	3.46560	4.40380	3.19910	K562	KRR1
RP11-216L13.17	ENSG00000272896.1	12.41530	39.82950	-1.68170	3.87480	3.07020	HepG2	SF3A3
RP11-216L13.17	ENSG00000272896.1	10.96280	0.00000	99999.99990	3.44450	2.65120	K562	TARDBP
RP11-216L13.17	ENSG00000272896.1	27.18620	6.10700	2.15420	3.15570	2.62720	HepG2	TIAL1
RP11-216L13.17	ENSG00000272896.1	3.08690	19.40770	-2.65240	3.12660	2.48030	HepG2	PUS1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 31 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-216L13.17 is not available on ENCORE database.

37 RBPs can affect the splicing of RP11-216L13.17 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	RP11-216L13.17	ENSG00000272896.1	chr9	+	139687270	139687475			139686702	139686810	139693553	139693675	-0.13700	0.00000	excluded	HepG2	HNRNPL
SE	RP11-216L13.17	ENSG00000272896.1	chr9	+	139687270	139687475			139686702	139686810	139693553	139693675	-0.16800	0.00002	excluded	HepG2	TIAL1
A3SS	RP11-216L13.17	ENSG00000272896.1	chr9	+	139686077	139686229			139686162	139686229	139685830	139685876	-0.13300	0.00000	shorter	HepG2	SRSF1
A3SS	RP11-216L13.17	ENSG00000272896.1	chr9	+	139686077	139686229			139686162	139686229	139685830	139685876	0.17800	0.00075	longer	HepG2	EIF3D
A3SS	RP11-216L13.17	ENSG00000272896.1	chr9	+	139686077	139686229			139686162	139686229	139685830	139685876	0.10200	0.00328	longer	HepG2	HNRNPL
MXE	RP11-216L13.17	ENSG00000272896.1	chr9	+	139686077	139686229	139686398	139686482	139685830	139685876	139686702	139686810	0.13800	0.00028	1included	K562	KHDRBS1
MXE	RP11-216L13.17	ENSG00000272896.1	chr9	+	139686077	139686229	139686371	139686482	139685830	139685876	139686702	139686810	-0.11900	0.00000	2included	HepG2	SRSF1
MXE	RP11-216L13.17	ENSG00000272896.1	chr9	+	139686077	139686229	139686398	139686482	139685830	139685876	139686702	139686810	-0.10200	0.00000	2included	HepG2	SRSF1
MXE	RP11-216L13.17	ENSG00000272896.1	chr9	+	139686077	139686229	139686424	139686482	139685830	139685876	139686702	139686810	-0.12600	0.00000	2included	HepG2	SRSF1
MXE	RP11-216L13.17	ENSG00000272896.1	chr9	+	139686077	139686229	139686398	139686482	139685830	139685876	139686702	139686810	0.12600	0.00457	1included	K562	ILF3

Showing 1 to 10 of 67 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-216L13.17

General Information

Functions

Localization

Domains (AlphaFold: RP11-216L13.17)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-216L13.17 is not avaliable on ENCORE database.

23 proteins are bound to RP11-216L13.17 RNA:

eCLIP assay for RP11-216L13.17 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-216L13.17 is not available on ENCORE database.

30 RBPs can affect the gene expression of RP11-216L13.17 :

The Knockdown/knockout RNA-Seq assay for RP11-216L13.17 is not available on ENCORE database.

37 RBPs can affect the splicing of RP11-216L13.17 :

The Knockdown/knockout RNA-Seq assay for RP11-216L13.17 is not avaliable on ENCORE database.