CTD-3074O7.11

General Information

Gene Name       : CTD-3074O7.11
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTD-3074O7.11)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTD-3074O7.11 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTD-3074O7.11 RNA is bound by 5 proteins.  







eCLIP assay for CTD-3074O7.11 is not avaliable on ENCORE database.





5 proteins are bound to CTD-3074O7.11 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr116630041266300504+3'-UTR3.463623.66308K562UPF1
chr116628710966287173+3'-UTR,5'-UTR,CDS,intron-Distal3.269306.27819HepG2PPIG
chr116628316166283194+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.575724.24993HepG2PPIG
chr116628319566283247+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.611515.60100HepG2PRPF8
chr116628876266288832+3'-UTR,5'-UTR,CDS,intron-Distal4.186455.52342HepG2PPIG
chr116627677566276881+3'-UTR,CDS,intron-Proximal3.542495.80891HepG2LARP4
chr116629421266294277+3'-UTR,CDS3.606213.59112HepG2PPIG
chr116628301066283060+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.914757.26626HepG2PPIG
chr116627680466276882+3'-UTR,intron-Proximal5.3491710.44987K562PABPC4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTD-3074O7.11 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTD-3074O7.11 is not available on ENCORE database.

  • 13 RBPs can affect the levels of CTD-3074O7.11.  








The Knockdown/knockout RNA-Seq assay for CTD-3074O7.11 is not available on ENCORE database.





13 RBPs can affect the gene expression of CTD-3074O7.11 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTD-3074O7.11ENSG00000256349.119.894400.0000099999.999906.052805.20720HepG2BOP1
CTD-3074O7.11ENSG00000256349.129.348200.0000099999.999904.106903.02020HepG2EIF3D
CTD-3074O7.11ENSG00000256349.112.535400.0000099999.999903.632802.41520HepG2EIF3G
CTD-3074O7.11ENSG00000256349.115.354300.0000099999.999903.371702.71780HepG2ETF1
CTD-3074O7.11ENSG00000256349.118.331900.0000099999.999906.016903.63290HepG2SND1
CTD-3074O7.11ENSG00000256349.118.773200.0000099999.999906.194405.21700HepG2UPF1
CTD-3074O7.11ENSG00000256349.116.271400.0000099999.999905.041702.30670K562AUH
CTD-3074O7.11ENSG00000256349.113.051400.0000099999.999903.410102.32550K562CELF1
CTD-3074O7.11ENSG00000256349.115.771200.0000099999.999904.391003.27060K562METAP2
CTD-3074O7.11ENSG00000256349.115.887900.0000099999.999905.042902.83810K562PKM
CTD-3074O7.11ENSG00000256349.114.834300.0000099999.999904.328503.18460K562SRPK2
CTD-3074O7.11ENSG00000256349.120.079200.0000099999.999903.557702.75160K562TARDBP
CTD-3074O7.11ENSG00000256349.112.552200.0000099999.999904.189302.10770K562UPF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTD-3074O7.11 is not available on ENCORE database.





4 RBPs can affect the splicing of CTD-3074O7.11 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECTD-3074O7.11ENSG00000256349.1chr11+662906426629083666288740662888476629092666291047-0.274000.000000.00071excludedHepG2TBRG4
SECTD-3074O7.11ENSG00000256349.1chr11+662906426629083666288740662888476629092666291047-0.140000.002490.05201excludedHepG2SRSF1
SECTD-3074O7.11ENSG00000256349.1chr11+6629064266290836662887406628884766290926662910470.315000.000440.08273includedHepG2PRPF4
MXECTD-3074O7.11ENSG00000256349.1chr11+6627867566278710662818766628214966278483662785606628301066283057-0.271000.001250.038032includedHepG2TIAL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CTD-3074O7.11 is not avaliable on ENCORE database.