CROT

General Information

Gene Name       : CROT
Gene ID             : ENSG00000005469.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CROT)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CROTENSG00000005469.119.358.038.69ENCSR000AEF
HepG2CROTENSG00000005469.114.708.736.71ENCSR985KAT
K562CROTENSG00000005469.113.054.363.71ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CROT is not avaliable on ENCORE database.



Proteins bound to RNA
  • CROT RNA is bound by 2 proteins.  







eCLIP assay for CROT is not avaliable on ENCORE database.





2 proteins are bound to CROT RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr78701144987011494+CDS4.220393.02457HepG2BCLAF1
chr78699563586995730+intron-Distal3.965753.29248HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CROT is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CROT is not available on ENCORE database.

  • 109 RBPs can affect the levels of CROT.  








The Knockdown/knockout RNA-Seq assay for CROT is not available on ENCORE database.





109 RBPs can affect the gene expression of CROT :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CROTENSG00000005469.7351.32150190.878100.880005.473904.19890HepG2ABCF1
CROTENSG00000005469.7338.73190230.782900.553503.984603.27980HepG2ACO1
CROTENSG00000005469.7641.44680353.924600.857806.770705.97960HepG2AKAP1
CROTENSG00000005469.7364.39730231.890800.652004.355403.40840HepG2AKAP8L
CROTENSG00000005469.7598.51430367.559200.703304.348603.52210HepG2AUH
CROTENSG00000005469.7362.03720219.809100.719804.079503.00700HepG2BCLAF1
CROTENSG00000005469.7501.77440225.472501.154008.315407.34550HepG2BOP1
CROTENSG00000005469.7211.60130143.067700.564602.601201.41000HepG2BUD13
CROTENSG00000005469.7261.01480153.685700.764004.503203.55040HepG2CALR
CROTENSG00000005469.7398.86050212.552900.908005.787804.35280HepG2CCAR1
CROTENSG00000005469.7828.69210278.233701.5744024.5100022.51540HepG2CIRBP
CROTENSG00000005469.7414.17470230.761200.843709.490408.40310HepG2CKAP4
CROTENSG00000005469.7730.00230225.601401.694006.558405.38010HepG2CNOT7
CROTENSG00000005469.7382.95250207.003900.887406.800305.75730HepG2CPSF6
CROTENSG00000005469.7321.36480213.454200.590202.748101.91640HepG2DDX19B
CROTENSG00000005469.7336.08690166.856101.010109.132707.21950HepG2DDX1
CROTENSG00000005469.7587.37940195.591101.5864023.9422022.22660HepG2DDX21
CROTENSG00000005469.7419.11160191.360001.1309011.671009.84620HepG2DDX24
CROTENSG00000005469.7838.24040339.076801.3057011.5587010.36000HepG2DDX3X
CROTENSG00000005469.7478.36110248.728200.943406.651705.51410HepG2DDX55
CROTENSG00000005469.7541.25480235.065501.203108.232606.59800HepG2DDX59
CROTENSG00000005469.7432.95470156.790901.4653016.8048014.62780HepG2DDX5
CROTENSG00000005469.7140.02660291.17090-1.056204.794104.00050HepG2DDX6
CROTENSG00000005469.7225.83010157.802600.517002.218301.34110HepG2DHX30
CROTENSG00000005469.7645.45510220.804001.5475031.4946029.85190HepG2DKC1
CROTENSG00000005469.7107.55260163.61880-0.605302.451301.78480HepG2DNAJC21
CROTENSG00000005469.7312.05420139.367501.162807.973406.49160HepG2EEF2
CROTENSG00000005469.7224.24140116.186100.948505.211203.68660HepG2EFTUD2
CROTENSG00000005469.7184.26920113.136900.703602.828801.91670HepG2EIF3D
CROTENSG00000005469.7331.59950184.676900.844306.449104.90490HepG2EIF3G
CROTENSG00000005469.7671.68170309.495601.1178011.8559010.56010HepG2EIF4A3
CROTENSG00000005469.7534.39890301.243000.826905.276304.34660HepG2EIF4B
CROTENSG00000005469.7521.72840324.152800.686504.459303.43730HepG2EIF4G1
CROTENSG00000005469.7322.16170165.395100.961807.031405.38600HepG2ESF1
CROTENSG00000005469.7930.29780422.019801.1403025.0116023.51410HepG2ETF1
CROTENSG00000005469.7471.68300225.541401.064309.817208.26980HepG2EWSR1
CROTENSG00000005469.7325.92660192.756000.757703.502202.64330HepG2FIP1L1
CROTENSG00000005469.7298.01570143.952001.049708.186906.86950HepG2FUBP3
CROTENSG00000005469.7418.51790222.889200.908905.825704.25420HepG2FUS
CROTENSG00000005469.7575.36270307.359800.904406.113604.77870HepG2G3BP2
CROTENSG00000005469.7197.31740100.734200.969905.043303.83170HepG2GEMIN5
CROTENSG00000005469.7505.46450234.676501.1068010.136108.96490HepG2GPKOW
CROTENSG00000005469.7322.94700208.812200.629002.793301.67660HepG2GRSF1
CROTENSG00000005469.7381.76850213.481700.838504.039202.34190HepG2HLTF
CROTENSG00000005469.7411.37040165.185901.3162013.3614012.11180HepG2HNRNPA1
CROTENSG00000005469.7366.03440183.728000.994303.877103.06690HepG2HNRNPC
CROTENSG00000005469.7517.88580223.954201.2093012.9010011.67400HepG2HNRNPLL
CROTENSG00000005469.7314.34790182.514100.784306.452505.55860HepG2HNRNPU
CROTENSG00000005469.7365.49930275.283200.408902.433701.75260HepG2IGF2BP1
CROTENSG00000005469.7688.74670294.414601.2260010.018908.81890HepG2IGF2BP2
CROTENSG00000005469.7740.98720276.182601.423707.306805.76100HepG2IGF2BP3
CROTENSG00000005469.7389.87260224.359800.797104.679503.59110HepG2LARP4
CROTENSG00000005469.7441.65980312.226700.500202.710102.06030HepG2MAGOH
CROTENSG00000005469.7597.24640313.998500.927503.144902.47520HepG2MATR3
CROTENSG00000005469.7266.58430156.069900.772304.702903.66960HepG2MSI2
CROTENSG00000005469.7708.56580321.414701.1404012.9600011.64750HepG2NCBP2
CROTENSG00000005469.7117.20790206.15090-0.814602.949602.03280HepG2PABPC1
CROTENSG00000005469.7409.40360158.217701.3715019.2659017.54780HepG2PRPF4
CROTENSG00000005469.7478.39810221.833601.108608.111806.13280HepG2PRPF6
CROTENSG00000005469.7565.97710191.859801.5606018.9240017.08710HepG2PRPF8
CROTENSG00000005469.7421.31180285.159800.563003.124602.55030HepG2PTBP1
CROTENSG00000005469.7445.73670311.036700.519003.191302.55790HepG2PUF60
CROTENSG00000005469.7450.56590330.163000.448503.532302.87910HepG2PUM1
CROTENSG00000005469.7645.59160235.071501.4574031.8464030.17770HepG2PUS1
CROTENSG00000005469.7516.77120308.826500.742603.281802.60970HepG2QKI
CROTENSG00000005469.71155.60690352.727801.7119051.5204049.83400HepG2RBM22
CROTENSG00000005469.7525.77170280.283100.907509.588408.38890HepG2RBM25
CROTENSG00000005469.7390.91000203.880800.939005.496903.99220HepG2RCC2
CROTENSG00000005469.7515.60490317.352100.700106.814606.03140HepG2NELFE
CROTENSG00000005469.7437.93000295.576400.567104.472703.71380HepG2RECQL
CROTENSG00000005469.7584.22290301.123000.9561010.570809.38530HepG2RPLP0
CROTENSG00000005469.7738.31570199.996101.8842023.6570021.16830HepG2RPS10
CROTENSG00000005469.7276.44470110.086101.3283010.832409.71180HepG2RPS19
CROTENSG00000005469.7651.22570231.538401.4918019.9852017.99600HepG2RPS2
CROTENSG00000005469.7510.96860226.388401.1743010.037008.55430HepG2RPS3A
CROTENSG00000005469.7440.14290189.787701.2135010.096708.73370HepG2RRP9
CROTENSG00000005469.7270.21920110.490201.290109.407807.70500HepG2SERBP1
CROTENSG00000005469.7705.08750268.568201.3924015.6029013.92640HepG2SF3A3
CROTENSG00000005469.7341.24050221.682800.622203.566502.77360HepG2SF3B1
CROTENSG00000005469.7318.38950189.563600.748004.769903.96370HepG2SMN1
CROTENSG00000005469.7559.49680246.656501.181505.048003.98340HepG2SNRNP70
CROTENSG00000005469.71237.49050398.388401.6351059.0630057.51740HepG2SRFBP1
CROTENSG00000005469.7886.70760309.882301.5166038.0416036.73490HepG2SRSF1
CROTENSG00000005469.7466.27310307.084000.602405.181604.36670HepG2SRSF5
CROTENSG00000005469.7411.38770274.647200.582804.895504.01100HepG2SRSF7
CROTENSG00000005469.7150.94000252.10830-0.740104.988804.28780HepG2SRSF9
CROTENSG00000005469.7782.86150345.887301.1784025.5416024.33580HepG2SSB
CROTENSG00000005469.7300.58510196.881900.610302.982301.83530HepG2STIP1
CROTENSG00000005469.71059.23270247.601002.0968037.6872035.75210HepG2SUPV3L1
CROTENSG00000005469.7438.65580278.542500.655105.630304.87950HepG2TAF15
CROTENSG00000005469.7336.38860218.229000.624203.013402.26030HepG2TARDBP
CROTENSG00000005469.7340.12550201.967900.751802.756101.69130HepG2TBRG4
CROTENSG00000005469.7292.79660165.955900.819004.758303.50220HepG2TFIP11
CROTENSG00000005469.7662.89470177.386901.9018040.3241038.82420HepG2TIAL1
CROTENSG00000005469.7407.85720303.843300.424602.210301.43520HepG2TUFM
CROTENSG00000005469.7461.60510164.927701.4847016.3112014.73790HepG2U2AF1
CROTENSG00000005469.7504.33940214.268301.234903.803302.63550HepG2U2AF2
CROTENSG00000005469.7235.11510146.262800.684703.349102.51630HepG2UCHL5
CROTENSG00000005469.7669.59070238.178401.4911013.4710012.14860HepG2UPF1
CROTENSG00000005469.7450.96140226.716200.992006.315604.75620HepG2UPF2
CROTENSG00000005469.7408.16850229.952700.827708.102907.16490HepG2UTP3
CROTENSG00000005469.7454.18060223.941901.020007.382405.71830HepG2XRCC6
CROTENSG00000005469.7430.29100243.736200.819905.389404.38770HepG2XRN2
CROTENSG00000005469.7703.41300156.128802.1715063.1198060.81910HepG2ZC3H8
CROTENSG00000005469.7403.88480261.951400.624505.825105.10830HepG2ZNF622
CROTENSG00000005469.7341.67450203.415200.748104.142902.52700HepG2ZRANB2
CROTENSG00000005469.7123.8456064.860100.933003.094102.17020K562BOP1
CROTENSG00000005469.7223.32740144.352000.629503.383902.67350K562DDX47
CROTENSG00000005469.7125.1687070.168700.834902.782001.92550K562FMR1
CROTENSG00000005469.7174.54190103.782900.749902.901002.17480K562G3BP2
CROTENSG00000005469.7146.3995077.448400.918503.330202.41800K562PCBP3
CROTENSG00000005469.7308.79120208.085200.569402.485701.71380K562PUF60
CROTENSG00000005469.7364.77220221.364900.720504.850303.40620K562PUM1
CROTENSG00000005469.7199.0548087.193801.190806.135304.91200K562RPS19
CROTENSG00000005469.7289.25920212.082900.447602.059701.32700K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CROT is not available on ENCORE database.





1 RBPs can affect the splicing of CROT :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECROTENSG00000005469.7chr7+869936368699374786991043869911688699869186998800-0.176000.000090.01111excludedHepG2TIAL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CROT is not avaliable on ENCORE database.