VTA1

General Information

Gene Name       : VTA1
Gene ID             : ENSG00000009844.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VTA1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VTA1ENSG00000009844.1576.8365.7671.30ENCSR000AEF
HepG2VTA1ENSG00000009844.1562.17101.4481.81ENCSR985KAT
K562VTA1ENSG00000009844.1566.2680.6273.44ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VTA1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • VTA1 RNA is bound by 17 proteins.  







eCLIP assay for VTA1 is not avaliable on ENCORE database.





17 proteins are bound to VTA1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6142540405142540450+3'-UTR4.076255.73324K562FAM120A
chr6142540526142540598+3'-UTR3.802665.48330K562UPF1
chr6142540639142540704+3'-UTR3.383424.66232K562FAM120A
chr6142539816142539897+3'-UTR4.432433.76686K562IGF2BP1
chr6142540017142540053+3'-UTR4.737857.18289K562YBX3
chr6142540469142540593+3'-UTR3.031647.14815K562FAM120A
chr6142541761142541824+3'-UTR4.783765.84761K562FAM120A
chr6142540632142540738+3'-UTR5.526778.21523HepG2SUB1
chr6142468489142468579+5'-UTR,CDS,intron-Proximal4.815225.35117HepG2PRPF8
chr6142468461142468531+5'-UTR,CDS3.434833.43213K562UCHL5
chr6142468405142468535+5'-UTR,CDS4.3454214.60876K562DDX3X
chr6142468400142468481+5'-UTR,CDS3.339368.23092HepG2NCBP2
chr6142519578142519663+CDS3.788593.43526K562GRWD1
chr6142519581142519641+CDS3.597814.45064HepG2GRWD1
chr6142510597142510665+CDS3.427884.74755K562ZNF622
chr6142519614142519708+CDS4.114743.74511K562IGF2BP1
chr6142539637142539711+CDS4.068363.28461K562BUD13
chr6142490683142490783+CDS,intron-Proximal3.720397.74581HepG2BCLAF1
chr6142519641142519736+CDS4.303569.94686HepG2GRWD1
chr6142539634142539732+CDS,intron-Proximal3.032614.07132HepG2GRWD1
chr6142487364142487428+CDS,intron-Distal,intron-Proximal3.239355.04943K562ZNF622
chr6142487429142487460+CDS,intron-Distal,intron-Proximal3.365153.17233HepG2BCLAF1
chr6142519574142519702+CDS,intron-Proximal3.649094.59151HepG2G3BP1
chr6142519574142519652+CDS,intron-Proximal3.693018.64848K562UCHL5
chr6142491576142491681+intron-Distal,intron-Proximal4.358585.46313K562KHSRP
chr6142506217142506252+intron-Distal3.747354.78196HepG2PTBP1
chr6142518129142518204+intron-Distal3.770023.16028HepG2SUGP2
chr6142506167142506217+intron-Distal5.057737.11021HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VTA1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VTA1 is not available on ENCORE database.

  • 93 RBPs can affect the levels of VTA1.  








The Knockdown/knockout RNA-Seq assay for VTA1 is not available on ENCORE database.





93 RBPs can affect the gene expression of VTA1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VTA1ENSG00000009844.111928.483901527.535600.336204.787203.80170HepG2AKAP8L
VTA1ENSG00000009844.111768.070502360.21640-0.416707.392206.35830HepG2AUH
VTA1ENSG00000009844.11824.631601909.32930-1.2112033.5693031.50490HepG2CALR
VTA1ENSG00000009844.111326.076602756.26050-1.055506.351304.85120HepG2CCAR1
VTA1ENSG00000009844.112606.844702111.273900.304102.234301.53440HepG2CIRBP
VTA1ENSG00000009844.111490.38050960.515100.633702.827002.05330HepG2CNOT7
VTA1ENSG00000009844.111341.763601712.54150-0.352003.133501.95730HepG2CPSF7
VTA1ENSG00000009844.111248.831501019.972800.291902.381201.37860HepG2CSTF2
VTA1ENSG00000009844.111914.765102238.05180-0.225102.400201.79370HepG2CELF1
VTA1ENSG00000009844.111988.199602406.54150-0.275504.765203.83250HepG2DAZAP1
VTA1ENSG00000009844.111240.287701733.78340-0.483207.384905.61600HepG2DDX1
VTA1ENSG00000009844.111131.208501437.93140-0.346103.256402.26240HepG2DDX24
VTA1ENSG00000009844.113289.255602572.760700.354302.736102.11210HepG2DDX3X
VTA1ENSG00000009844.111081.148002209.99790-1.0315014.5296013.26060HepG2DDX6
VTA1ENSG00000009844.111074.789201639.71800-0.609407.878306.30990HepG2DHX30
VTA1ENSG00000009844.11597.254001700.08320-1.5092055.7159053.14550HepG2DNAJC21
VTA1ENSG00000009844.111273.624701685.02400-0.403807.715206.69780HepG2DNAJC2
VTA1ENSG00000009844.11936.658002124.58100-1.1816021.3720019.83350HepG2EIF2S1
VTA1ENSG00000009844.111738.610802347.93900-0.433503.185602.50020HepG2EIF4A3
VTA1ENSG00000009844.111497.079002285.99610-0.610704.715503.83160HepG2EIF4B
VTA1ENSG00000009844.111683.172702274.27460-0.434203.592602.67250HepG2EIF4G2
VTA1ENSG00000009844.11848.236101112.19520-0.390903.750902.36990HepG2FAM120A
VTA1ENSG00000009844.111321.781202368.88950-0.8417012.2177010.86820HepG2FXR1
VTA1ENSG00000009844.111031.370002197.53580-1.0913017.4892015.89010HepG2G3BP1
VTA1ENSG00000009844.111451.763901107.990800.389802.643201.76840HepG2GEMIN5
VTA1ENSG00000009844.11527.36600811.47310-0.621703.154501.69640HepG2HNRNPA0
VTA1ENSG00000009844.111326.685601909.12870-0.525106.183805.17880HepG2HNRNPC
VTA1ENSG00000009844.111609.342001903.74120-0.242402.650601.94740HepG2HNRNPF
VTA1ENSG00000009844.111459.680302225.10280-0.608207.622306.50770HepG2HNRNPK
VTA1ENSG00000009844.111856.641202192.20130-0.239703.725602.95100HepG2HNRNPL
VTA1ENSG00000009844.111339.723301896.50780-0.5014010.036208.94090HepG2HNRNPU
VTA1ENSG00000009844.111646.230902233.76250-0.440303.795803.01560HepG2IGF2BP2
VTA1ENSG00000009844.111626.454301937.22260-0.252303.977203.11400HepG2ILF2
VTA1ENSG00000009844.111156.822401389.82440-0.264703.302402.19030HepG2KIF1C
VTA1ENSG00000009844.111595.499502908.55930-0.866305.284204.12530HepG2LARP4
VTA1ENSG00000009844.111854.994302439.13640-0.395002.981902.32550HepG2NCBP2
VTA1ENSG00000009844.111949.039002386.31700-0.292003.277002.44910HepG2NOL12
VTA1ENSG00000009844.111049.342902172.26010-1.0497017.0543015.31370HepG2PABPC4
VTA1ENSG00000009844.111594.283101877.23750-0.235702.582201.76120HepG2PARN
VTA1ENSG00000009844.111541.299302109.88470-0.453008.690207.71290HepG2PCBP1
VTA1ENSG00000009844.111370.191001691.53610-0.304003.364802.55850HepG2PPIL4
VTA1ENSG00000009844.111913.101301532.024000.320404.319403.37700HepG2PRPF4
VTA1ENSG00000009844.111706.285102146.83500-0.331404.852504.17160HepG2PTBP1
VTA1ENSG00000009844.112115.242602418.08910-0.193002.748102.15680HepG2PUM1
VTA1ENSG00000009844.112045.674102416.34040-0.240202.255501.64750HepG2PUM2
VTA1ENSG00000009844.111750.107902325.18530-0.409905.851804.99080HepG2QKI
VTA1ENSG00000009844.112640.746102264.910900.221402.436801.94190HepG2RBM22
VTA1ENSG00000009844.111534.293602110.21350-0.459805.771804.83030HepG2RBM25
VTA1ENSG00000009844.111904.531502225.19700-0.224502.675402.06770HepG2RECQL
VTA1ENSG00000009844.111317.71950963.788600.451202.661001.87650HepG2RPS3A
VTA1ENSG00000009844.111009.426101688.93320-0.7426020.5837019.05550HepG2SAFB2
VTA1ENSG00000009844.112841.494302070.373100.456702.983902.28280HepG2SF3A3
VTA1ENSG00000009844.111714.268302235.22490-0.382806.528605.68260HepG2SF3B4
VTA1ENSG00000009844.111724.554301969.59700-0.191702.352601.75330HepG2SMN1
VTA1ENSG00000009844.112215.872502558.14380-0.207202.336201.86310HepG2SRFBP1
VTA1ENSG00000009844.113568.317502333.053100.6129018.8416017.83680HepG2SRSF1
VTA1ENSG00000009844.111223.878801898.03040-0.6330016.0421014.90940HepG2SRSF9
VTA1ENSG00000009844.112002.151202557.85790-0.353407.212106.28800HepG2SUCLG1
VTA1ENSG00000009844.111821.193002096.93430-0.203401.925801.44320HepG2TAF15
VTA1ENSG00000009844.111388.704901778.20130-0.356702.933002.18920HepG2TARDBP
VTA1ENSG00000009844.112166.569901283.109100.755703.886302.63510HepG2TBRG4
VTA1ENSG00000009844.111326.502601926.90810-0.538707.839706.44640HepG2TIA1
VTA1ENSG00000009844.111024.225501859.28130-0.8602026.0892024.57750HepG2TRIM56
VTA1ENSG00000009844.112448.537001796.239200.446804.270403.49910HepG2U2AF1
VTA1ENSG00000009844.111791.049002355.50960-0.395203.016502.14380HepG2UBE2L3
VTA1ENSG00000009844.11578.64440954.64020-0.722306.543705.36670HepG2UCHL5
VTA1ENSG00000009844.111055.085101480.00620-0.488202.306201.39590HepG2UPF2
VTA1ENSG00000009844.11612.714101772.68910-1.5327065.0333062.74430HepG2UTP3
VTA1ENSG00000009844.111890.411401511.887100.322205.242604.36650HepG2ZC3H8
VTA1ENSG00000009844.111620.078201292.150700.326202.756101.58020K562AARS
VTA1ENSG00000009844.112155.614201621.836700.410406.844006.00900K562AGGF1
VTA1ENSG00000009844.111147.743901449.44140-0.336704.492403.25300K562BCLAF1
VTA1ENSG00000009844.11622.66980829.41260-0.413603.002401.89700K562CCAR1
VTA1ENSG00000009844.111953.849502497.72730-0.354305.086903.55310K562CPEB4
VTA1ENSG00000009844.111520.868801863.20150-0.292902.629601.86360K562CPSF6
VTA1ENSG00000009844.11870.343601099.61760-0.337303.000901.89690K562CSTF2
VTA1ENSG00000009844.111307.638801604.16410-0.294903.470902.11150K562DDX21
VTA1ENSG00000009844.112925.151602584.605600.178501.943501.37920K562DDX47
VTA1ENSG00000009844.11682.18860891.92590-0.386802.855101.48660K562DNAJC21
VTA1ENSG00000009844.111010.406801282.38990-0.343904.104302.61270K562EIF2S1
VTA1ENSG00000009844.11877.224001098.45090-0.324503.058201.82640K562EIF4B
VTA1ENSG00000009844.112621.267203158.84750-0.269102.987002.01150K562EIF4G2
VTA1ENSG00000009844.11810.004401064.72220-0.394504.028602.42280K562EWSR1
VTA1ENSG00000009844.111639.502601268.504200.370004.719703.95870K562FXR1
VTA1ENSG00000009844.111245.283001563.47180-0.328302.836601.38550K562G3BP1
VTA1ENSG00000009844.111803.979601367.841300.399202.409001.75570K562G3BP2
VTA1ENSG00000009844.111329.210401778.91680-0.420404.235303.25820K562GPKOW
VTA1ENSG00000009844.112032.830502606.14390-0.358403.814102.93110K562GRSF1
VTA1ENSG00000009844.111089.780201414.39440-0.376102.772602.17490K562HNRNPC
VTA1ENSG00000009844.112175.660601633.516200.413403.249301.89900K562HNRNPK
VTA1ENSG00000009844.111499.824201805.83590-0.267902.699901.81850K562HNRNPU
VTA1ENSG00000009844.111270.527101634.71970-0.363602.256001.35760K562IGF2BP2
VTA1ENSG00000009844.111312.991101736.41380-0.403304.030302.96030K562METAP2
VTA1ENSG00000009844.111361.196701827.55320-0.425007.412006.14380K562MTPAP
VTA1ENSG00000009844.111502.370602030.67980-0.434708.585707.37470K562NSUN2
VTA1ENSG00000009844.112028.069801198.905600.7583011.100409.58560K562PRPF8
VTA1ENSG00000009844.111010.707001268.08880-0.327302.262701.45270K562PSIP1
VTA1ENSG00000009844.112043.281801673.785800.287702.075501.59270K562PUS1
VTA1ENSG00000009844.111916.363201630.703000.232802.015401.49460K562RBM15
VTA1ENSG00000009844.111730.627602003.60800-0.211302.092001.37610K562SF3A3
VTA1ENSG00000009844.111238.669601545.70380-0.319502.426301.45270K562SRSF5
VTA1ENSG00000009844.111815.454901373.597100.402302.795901.97190K562SYNCRIP
VTA1ENSG00000009844.111331.976701598.10110-0.262802.127701.41810K562TIA1
VTA1ENSG00000009844.111765.560101326.304600.412603.039101.88160K562U2AF1
VTA1ENSG00000009844.111688.256301369.645900.301602.882702.06310K562U2AF2
VTA1ENSG00000009844.11873.888801228.76710-0.491702.885201.84060K562UCHL5
VTA1ENSG00000009844.111608.871402153.16460-0.420405.486704.51350K562UPF1
VTA1ENSG00000009844.111324.551101842.40840-0.476105.909704.60690K562WDR3
VTA1ENSG00000009844.112363.546703105.79600-0.394004.753203.05270K562WRN
VTA1ENSG00000009844.112182.599902953.68100-0.436505.148803.91340K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VTA1 is not available on ENCORE database.





6 RBPs can affect the splicing of VTA1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEVTA1ENSG00000009844.11chr6+142510562142510671142491482142491558142519575142519918-0.057000.006220.08771excludedK562SF3B4
SEVTA1ENSG00000009844.11chr6+142525121142525202142519575142519752142539634142545826-0.106000.000010.00037excludedK562SF3B4
SEVTA1ENSG00000009844.11chr6+142510562142510671142491482142491558142519575142519752-0.144000.000000.00000excludedK562AQR
SEVTA1ENSG00000009844.11chr6+142525121142525202142519575142519752142539634142545826-0.100000.000010.00021excludedK562AQR
SEVTA1ENSG00000009844.11chr6+1425251211425252021425195751425197521425396341425458260.052000.000030.00143includedHepG2SRSF1
SEVTA1ENSG00000009844.11chr6+142525156142525202142519575142519752142539634142540204-0.206000.003020.06419excludedK562AGGF1
SEVTA1ENSG00000009844.11chr6+142510562142510671142491482142491558142519575142519918-0.052000.000000.00000excludedK562SF3B1
SEVTA1ENSG00000009844.11chr6+1425251211425252021425195751425197521425396341425458260.053000.000620.02773includedK562PTBP1
MXEVTA1ENSG00000009844.11chr6+1424906861424908141425105621425106711424683931424685361425195751425197520.065000.000020.000271includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for VTA1 is not avaliable on ENCORE database.