NIPAL3

General Information

Gene Name       : NIPAL3
Gene ID             : ENSG00000001461.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NIPAL3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NIPAL3ENSG00000001461.162.122.492.31ENCSR000AEF
HepG2NIPAL3ENSG00000001461.164.903.324.11ENCSR985KAT
K562NIPAL3ENSG00000001461.1615.4013.4414.42ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NIPAL3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NIPAL3 RNA is bound by 7 proteins.  







eCLIP assay for NIPAL3 is not avaliable on ENCORE database.





7 proteins are bound to NIPAL3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12479665524796683+3'-UTR4.190133.20319K562UPF1
chr12479852624798561+3'-UTR4.264423.11728K562FAM120A
chr12479634824796377+3'-UTR3.567923.07801K562UPF1
chr12479701924797054+3'-UTR3.494143.80864K562FAM120A
chr12479765524797704+3'-UTR3.934184.82552K562UPF1
chr12479656924796604+3'-UTR3.267904.09267K562FAM120A
chr12479167824791809+3'-UTR,intron-Distal4.769825.25173HepG2RBFOX2
chr12479851124798564+3'-UTR4.5992815.51277K562UPF1
chr12479151324791604+3'-UTR,intron-Distal4.263168.41580K562RBFOX2
chr12479074724790804+3'-UTR,intron-Distal3.390083.94496K562RBFOX2
chr12479170024791798+3'-UTR,intron-Distal4.891707.00425K562RBFOX2
chr12479651624796601+3'-UTR5.9794815.26585K562UPF1
chr12474595924746027+5'-UTR4.389135.20509K562YBX3
chr12474602724746079+5'-UTR,CDS4.091763.65750K562YBX3
chr12477597124776043+CDS3.957163.28461K562BUD13
chr12475064924750742+intron-Distal4.278414.13641K562TARDBP
chr12475245224752554+intron-Distal4.329884.35360K562QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NIPAL3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NIPAL3 is not available on ENCORE database.

  • 61 RBPs can affect the levels of NIPAL3.  








The Knockdown/knockout RNA-Seq assay for NIPAL3 is not available on ENCORE database.





61 RBPs can affect the gene expression of NIPAL3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NIPAL3ENSG00000001461.12333.46170231.348700.527402.754801.68520HepG2AATF
NIPAL3ENSG00000001461.12882.40940456.869000.949609.114008.21080HepG2AKAP1
NIPAL3ENSG00000001461.12499.40990360.704000.469302.542501.54340HepG2AKAP8
NIPAL3ENSG00000001461.12306.91420185.440500.726804.345203.61470HepG2BOP1
NIPAL3ENSG00000001461.12404.01180248.180400.702906.912805.94690HepG2CKAP4
NIPAL3ENSG00000001461.12108.15950170.24230-0.654402.326701.68830HepG2CPSF6
NIPAL3ENSG00000001461.12470.45340229.553201.0351015.9095014.28180HepG2DDX19B
NIPAL3ENSG00000001461.12351.13110249.784800.491202.689001.79010HepG2DDX24
NIPAL3ENSG00000001461.12891.55640437.613601.0266012.0780010.85610HepG2DDX3X
NIPAL3ENSG00000001461.12356.96810221.530700.688203.986103.07550HepG2DDX55
NIPAL3ENSG00000001461.12322.29100237.451000.440602.425701.78460HepG2DKC1
NIPAL3ENSG00000001461.12608.08520399.328500.606603.992503.22810HepG2EIF4A3
NIPAL3ENSG00000001461.12746.67800505.649800.562206.737205.86720HepG2ETF1
NIPAL3ENSG00000001461.12370.87800231.306600.681004.503103.51490HepG2FUBP3
NIPAL3ENSG00000001461.12326.53270192.976700.758704.180803.40550HepG2GPKOW
NIPAL3ENSG00000001461.12336.83140236.971800.507203.561002.46270HepG2HDGF
NIPAL3ENSG00000001461.12184.57190379.93730-1.041608.210807.11170HepG2IGF2BP2
NIPAL3ENSG00000001461.12200.09130356.63800-0.833802.234101.35830HepG2IGF2BP3
NIPAL3ENSG00000001461.12301.66450226.899700.410802.371801.42690HepG2KIF1C
NIPAL3ENSG00000001461.12187.77320405.39580-1.110308.594007.53320HepG2MATR3
NIPAL3ENSG00000001461.12560.68170414.930500.434202.314601.73320HepG2NCBP2
NIPAL3ENSG00000001461.12468.54920369.022100.344402.070801.40820HepG2NOL12
NIPAL3ENSG00000001461.12164.65530283.37850-0.783305.732204.57430HepG2PARN
NIPAL3ENSG00000001461.12616.12420388.774600.664207.837506.89910HepG2PCBP1
NIPAL3ENSG00000001461.12181.99980268.62720-0.561703.337102.49420HepG2PRPF4
NIPAL3ENSG00000001461.12439.44690252.790200.797608.824707.82850HepG2PUS1
NIPAL3ENSG00000001461.12487.59330321.165100.602302.525001.85090HepG2RAVER1
NIPAL3ENSG00000001461.12527.12840291.546500.854308.974307.54790HepG2RBM15
NIPAL3ENSG00000001461.12735.55610422.627000.7994011.0695010.18410HepG2RBM22
NIPAL3ENSG00000001461.12325.50520440.25390-0.435702.862202.31360HepG2NELFE
NIPAL3ENSG00000001461.12308.32160169.154800.866005.305004.24900HepG2RRP9
NIPAL3ENSG00000001461.12332.23460254.956000.381902.192301.60710HepG2SAFB2
NIPAL3ENSG00000001461.12208.61070297.31860-0.511203.105002.42880HepG2SMN1
NIPAL3ENSG00000001461.12856.27260477.336900.8430015.0188014.09870HepG2SRFBP1
NIPAL3ENSG00000001461.12494.09840349.737300.498404.444903.77650HepG2SRSF9
NIPAL3ENSG00000001461.12266.23230414.43320-0.638505.677404.99330HepG2SSB
NIPAL3ENSG00000001461.12534.74390386.387400.468703.568602.94650HepG2TAF15
NIPAL3ENSG00000001461.12463.61180355.058900.384802.277001.51660HepG2TIA1
NIPAL3ENSG00000001461.12384.71150280.676200.454803.165202.57120HepG2TRIM56
NIPAL3ENSG00000001461.12410.52870265.104200.630805.681204.77120HepG2ZC3H8
NIPAL3ENSG00000001461.12226.44950294.61790-0.379702.074701.58200HepG2ZNF622
NIPAL3ENSG00000001461.12638.822601076.46090-0.7528014.0013012.82940K562AGGF1
NIPAL3ENSG00000001461.12786.379401120.07970-0.510302.812702.15370K562AKAP8L
NIPAL3ENSG00000001461.12939.689401239.38400-0.399403.304602.67450K562AQR
NIPAL3ENSG00000001461.12449.97050724.95970-0.688109.430007.03350K562DDX27
NIPAL3ENSG00000001461.12793.163101185.03140-0.579209.435708.31770K562DDX47
NIPAL3ENSG00000001461.12950.814401205.45300-0.342303.858002.80090K562DKC1
NIPAL3ENSG00000001461.12575.31240782.12130-0.443002.980802.03280K562EFTUD2
NIPAL3ENSG00000001461.12544.19170837.48080-0.621904.585503.21400K562EIF3D
NIPAL3ENSG00000001461.12483.75670709.11760-0.551705.676204.55070K562EIF3G
NIPAL3ENSG00000001461.12838.775501043.26600-0.314802.466401.45360K562HNRNPA1
NIPAL3ENSG00000001461.12544.37700715.06370-0.393502.748202.15340K562HNRNPC
NIPAL3ENSG00000001461.12516.80040696.83360-0.431202.529701.64150K562HNRNPM
NIPAL3ENSG00000001461.12634.30620919.17630-0.535203.770002.50220K562IGF2BP2
NIPAL3ENSG00000001461.121029.527101331.71850-0.371302.671301.78200K562MBNL1
NIPAL3ENSG00000001461.12431.81750761.09240-0.817608.145106.85590K562PRPF8
NIPAL3ENSG00000001461.12596.848201111.00240-0.8964012.3044011.20650K562PUS1
NIPAL3ENSG00000001461.12734.067201082.34640-0.560203.715803.04290K562RBM15
NIPAL3ENSG00000001461.12460.69100775.30610-0.751006.254305.01850K562RPS19
NIPAL3ENSG00000001461.12565.29460717.83530-0.344602.306101.52750K562SF3B4
NIPAL3ENSG00000001461.121474.56450919.925200.6806010.237208.89130K562SRSF1
NIPAL3ENSG00000001461.12596.02740930.97260-0.643406.456605.33370K562TARDBP
NIPAL3ENSG00000001461.12432.80500691.01450-0.675006.735705.49000K562U2AF2
NIPAL3ENSG00000001461.12807.223101076.74010-0.415605.477204.50450K562UPF1
NIPAL3ENSG00000001461.12759.80140958.07970-0.334503.694902.72730K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NIPAL3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of NIPAL3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for NIPAL3 is not avaliable on ENCORE database.